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The map label for this gene is rlmH [H]

Identifier: 45358600

GI number: 45358600

Start: 1030514

End: 1030993

Strand: Direct

Name: rlmH [H]

Synonym: MMP1037

Alternate gene names: 45358600

Gene position: 1030514-1030993 (Clockwise)

Preceding gene: 45358599

Following gene: 45358601

Centisome position: 62.04

GC content: 27.5

Gene sequence:

>480_bases
ATGAATGTAACAATCATTTCTGTTGGAAAAATAAAAGAAAAATATCTAAGTGATGCAATTATTGAATACTCAAAAAGAAT
TTCAAGGTATTCAAAACTCGATATAATCGAAGTTGCCGATGAAAAAACCCCTGAAAATCCAAGCGACGTTGAAAAATCAA
AAATACTTGAAAAGGAAGCTGAAAGAATTTTAAAATATCTAAAAAAAGATTCATTTTTGATAACTCTTGAAATTTTGGGA
AAAGAATTAACTTCAGAAGATCTTGCAAAAAAAATAAACGACCTTTCAATTTCTGGAAAAAGTGATATAACATTTGTTAT
TGGCGGATCGTTAGGATTATCAAAAAATATTTCAGAAATTTCAGATTTTAAACTGTCTTTTTCAAAAATGACGTTTCCCC
ATCAATTAATGAGAGTTATTCTTTTAGAACAAATCTATCGAAGTTTTAGAATTATTAGCGGGGAGCCTTATCATAAATAA

Upstream 100 bases:

>100_bases
AAAATTCATTAAACAATAAATAATTCTTTTTTAAATATTTCAAATTCTTATTCTTTTTTTAATTTTGGCAATTTAAAAGC
TTTAAAGTGGAGAAATTTAT

Downstream 100 bases:

>100_bases
AATTTATTTTCCTTATCAATATTTTATGAATGTGCTTTTTTTATCCTCAAAACGTCAGTTTAGCTTTAAAAAACTGTAAA
AATTATTTAATATCCAATTT

Product: rRNA large subunit methyltransferase

Products: NA

Alternate protein names: rRNA (pseudouridine-N3-)-methyltransferase rlmH [H]

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MNVTIISVGKIKEKYLSDAIIEYSKRISRYSKLDIIEVADEKTPENPSDVEKSKILEKEAERILKYLKKDSFLITLEILG
KELTSEDLAKKINDLSISGKSDITFVIGGSLGLSKNISEISDFKLSFSKMTFPHQLMRVILLEQIYRSFRIISGEPYHK

Sequences:

>Translated_159_residues
MNVTIISVGKIKEKYLSDAIIEYSKRISRYSKLDIIEVADEKTPENPSDVEKSKILEKEAERILKYLKKDSFLITLEILG
KELTSEDLAKKINDLSISGKSDITFVIGGSLGLSKNISEISDFKLSFSKMTFPHQLMRVILLEQIYRSFRIISGEPYHK
>Mature_159_residues
MNVTIISVGKIKEKYLSDAIIEYSKRISRYSKLDIIEVADEKTPENPSDVEKSKILEKEAERILKYLKKDSFLITLEILG
KELTSEDLAKKINDLSISGKSDITFVIGGSLGLSKNISEISDFKLSFSKMTFPHQLMRVILLEQIYRSFRIISGEPYHK

Specific function: Unknown

COG id: COG1576

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase rlmH family [H]

Homologues:

Organism=Escherichia coli, GI1786855, Length=159, Percent_Identity=30.188679245283, Blast_Score=93, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016051
- InterPro:   IPR003742 [H]

Pfam domain/function: PF02590 SPOUT_MTase [H]

EC number: NA

Molecular weight: Translated: 18162; Mature: 18162

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTIISVGKIKEKYLSDAIIEYSKRISRYSKLDIIEVADEKTPENPSDVEKSKILEKEA
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCCCCCCHHHHHHHHHHHH
ERILKYLKKDSFLITLEILGKELTSEDLAKKINDLSISGKSDITFVIGGSLGLSKNISEI
HHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHH
SDFKLSFSKMTFPHQLMRVILLEQIYRSFRIISGEPYHK
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCCCCCC
>Mature Secondary Structure
MNVTIISVGKIKEKYLSDAIIEYSKRISRYSKLDIIEVADEKTPENPSDVEKSKILEKEA
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCCCCCCHHHHHHHHHHHH
ERILKYLKKDSFLITLEILGKELTSEDLAKKINDLSISGKSDITFVIGGSLGLSKNISEI
HHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHH
SDFKLSFSKMTFPHQLMRVILLEQIYRSFRIISGEPYHK
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA