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The map label for this gene is 45358591

Identifier: 45358591

GI number: 45358591

Start: 1019501

End: 1021543

Strand: Direct

Name: 45358591

Synonym: MMP1028

Alternate gene names: NA

Gene position: 1019501-1021543 (Clockwise)

Preceding gene: 45358582

Following gene: 45358592

Centisome position: 61.37

GC content: 31.38

Gene sequence:

>2043_bases
ATGAAAACAGAGATGACAAACGTTGATATCAGTGTAGCAGTATCTGAACTTCAAAAGGTAATCAACGGAAAATTGGACAA
GGCTTTTTTAGTAAATAATCAGGACGGAAAAGAATTAATTTTAAAAGTACATATTCCTGAAATCGGTTCAAGAGAAATTG
CAATAGGCCTTGGAAAATACAAATACATGACACTTACGGAATACGAAAGAGAAAAACCAAGGAATCCTCCTTCTTTTGTA
ATGCTTCTTAGGAAACATTTGAAAAACATTAAAATAACGAGTGTTGCCCAGCATAACTTTGACAGGATCGTAATTTTCAA
TTTTGAATGGAATGAATTAAAATACAAACTAATTATCGAGTTATTTGGAGACGGAAATGCAATACTCCTTGATAGCGAAG
ATAAAATTATTCTCCCGTTAAAAATTGAAAGGTGGAGTACGAGAAAAATCGTTCCAAAGGAAATTTACAAATTCCCACCT
CAAAAGGACCTTGATCCAAAAAATTTAGATTATTCTCTTGCTAAGAAATTGTTCATTGAAGAATTTGAAAAGGAAGAAAA
CAAAGATACTGAAGTTGTAAGGATAATTTCAAGGACTTTTGGACTTGCTGGAGTTTATTCAGAAGAAATCTGTCTAAATT
CAGAAATTGATAAAAATTTGAAGAATCCAAAAAACGAAGAAATTGAAAAACTCTTTGAAGGATCCAAATCATTCTTTAAA
AAAGTATTTGGCGAATTAAAACCAAAATCTACACTTAAGAATGGAGAATTTGTGAATATCGACCCGATTGATTTAAAAAT
ACATGAAAATCTGAAAGAAAATGAAATAAAACATTATGAAAGTTTTTTAACTGCGCTTGATGAATATTTCTCAAGATTTA
TCATGAAAAAAGAGATTAAGCAGGCTGAATCAAAATTACAAAAACTCGTGAAAAAACAGGAGCGTATATTAAAAAGCCAG
CTTGATACCAAAGACAAATACGAAAAACAATCCGTTTCAAACCATAAACGTGGAGATTTGATTTATGCAAATTATTCTCT
TGTAGATGAAATTGTAAGCACAATTAAAGATGCAAGAGAAAAAATGGACTGGAATGGCATTAAAAATGTTATTAAAGAGA
ATAAAACGCACCCAATTTTAAGTAAAATAATAAATGTGAATGAAAAAAATGCAGAATTAACCCTAAAACTATCTGCTGAC
TATGGGAATGGACTTATTGAAGACTCAGTACCAGTAGATTTAAGAAAAAATGCGTTTGAAAATGCAGATATAGTTTACCA
AAAATCAAAGAAATTTAAAAATAAAGTTCAGGGAGTTATTGAAGCTTTAAAAATTTCTGAGAAAAAACTTGCAGAATTAA
AAGAAAAAGAAAAACTTGATTCTGAAGTATTTAAAGAAAAAGAAGAAAAAATTAAGAAAAAGGAAAGAAAAGTACTAAAA
TGGTACGAAAAATTGAAATGGACCGTTATCGGCGGATATTTAATTGTTGCAGGAAAGGATGCAACAACAAACGAGATGCT
GATAAAAAGATACGTTGAAAAAAACGATATAGTATTCCACACCCTTATGGAAGGAGCACCATTTACAATAATTAGAACAG
AAGGCTCTGAAGAAATACCCGATGAAAATATACTGTTTGAAGTTGCAAAATTTGCAGCATCGCACTCGAGAGCATGGAAA
CTTGGAATTGGAAGTGCAGATGTCTACTGGGTAAGGCCTGACCAGATTTCAAAAACTGCTGAAAGTGGAGAATACCTAAA
AAAAGGAGCTTTTGTAATTCGCGGAAAAAGAAACTTCATAAGAAGTGCTGCGCTTGAACTTGGAATCGGGATAATAAATT
ACGATGGAAAATTAAGATTAACTACGGCTCCAGAATCAGTTGCAAAAGAAAATTTTGAAAAATGTATTCTGTTAAAACCT
GGAAAATTGAAAAAGAGCGACCTTGTAAAAGAGCTTTTAAAAGAATTTAGTGACTTTGAAGTTGATGACGAAGATATTTT
AAGGGCACTTCCTCCAGGAGAGTCCGAAATAAAACTAAAATAA

Upstream 100 bases:

>100_bases
GTCAAAATACATGTAATATTACCGTGATAAAACATTTGGAATTTATGTAATTATTATTCTTTAAAAAATTTATAATCTGG
AAAATTTGGAAGAGATTTTT

Downstream 100 bases:

>100_bases
TTTTTAATTTTTTAAATTCAAACCATAAGGCATATTAATCCCAAATTAAAGATAAAATTAAATAAAAATTATTGAAGTTG
GTTTTCATGAAAAATACAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 680; Mature: 680

Protein sequence:

>680_residues
MKTEMTNVDISVAVSELQKVINGKLDKAFLVNNQDGKELILKVHIPEIGSREIAIGLGKYKYMTLTEYEREKPRNPPSFV
MLLRKHLKNIKITSVAQHNFDRIVIFNFEWNELKYKLIIELFGDGNAILLDSEDKIILPLKIERWSTRKIVPKEIYKFPP
QKDLDPKNLDYSLAKKLFIEEFEKEENKDTEVVRIISRTFGLAGVYSEEICLNSEIDKNLKNPKNEEIEKLFEGSKSFFK
KVFGELKPKSTLKNGEFVNIDPIDLKIHENLKENEIKHYESFLTALDEYFSRFIMKKEIKQAESKLQKLVKKQERILKSQ
LDTKDKYEKQSVSNHKRGDLIYANYSLVDEIVSTIKDAREKMDWNGIKNVIKENKTHPILSKIINVNEKNAELTLKLSAD
YGNGLIEDSVPVDLRKNAFENADIVYQKSKKFKNKVQGVIEALKISEKKLAELKEKEKLDSEVFKEKEEKIKKKERKVLK
WYEKLKWTVIGGYLIVAGKDATTNEMLIKRYVEKNDIVFHTLMEGAPFTIIRTEGSEEIPDENILFEVAKFAASHSRAWK
LGIGSADVYWVRPDQISKTAESGEYLKKGAFVIRGKRNFIRSAALELGIGIINYDGKLRLTTAPESVAKENFEKCILLKP
GKLKKSDLVKELLKEFSDFEVDDEDILRALPPGESEIKLK

Sequences:

>Translated_680_residues
MKTEMTNVDISVAVSELQKVINGKLDKAFLVNNQDGKELILKVHIPEIGSREIAIGLGKYKYMTLTEYEREKPRNPPSFV
MLLRKHLKNIKITSVAQHNFDRIVIFNFEWNELKYKLIIELFGDGNAILLDSEDKIILPLKIERWSTRKIVPKEIYKFPP
QKDLDPKNLDYSLAKKLFIEEFEKEENKDTEVVRIISRTFGLAGVYSEEICLNSEIDKNLKNPKNEEIEKLFEGSKSFFK
KVFGELKPKSTLKNGEFVNIDPIDLKIHENLKENEIKHYESFLTALDEYFSRFIMKKEIKQAESKLQKLVKKQERILKSQ
LDTKDKYEKQSVSNHKRGDLIYANYSLVDEIVSTIKDAREKMDWNGIKNVIKENKTHPILSKIINVNEKNAELTLKLSAD
YGNGLIEDSVPVDLRKNAFENADIVYQKSKKFKNKVQGVIEALKISEKKLAELKEKEKLDSEVFKEKEEKIKKKERKVLK
WYEKLKWTVIGGYLIVAGKDATTNEMLIKRYVEKNDIVFHTLMEGAPFTIIRTEGSEEIPDENILFEVAKFAASHSRAWK
LGIGSADVYWVRPDQISKTAESGEYLKKGAFVIRGKRNFIRSAALELGIGIINYDGKLRLTTAPESVAKENFEKCILLKP
GKLKKSDLVKELLKEFSDFEVDDEDILRALPPGESEIKLK
>Mature_680_residues
MKTEMTNVDISVAVSELQKVINGKLDKAFLVNNQDGKELILKVHIPEIGSREIAIGLGKYKYMTLTEYEREKPRNPPSFV
MLLRKHLKNIKITSVAQHNFDRIVIFNFEWNELKYKLIIELFGDGNAILLDSEDKIILPLKIERWSTRKIVPKEIYKFPP
QKDLDPKNLDYSLAKKLFIEEFEKEENKDTEVVRIISRTFGLAGVYSEEICLNSEIDKNLKNPKNEEIEKLFEGSKSFFK
KVFGELKPKSTLKNGEFVNIDPIDLKIHENLKENEIKHYESFLTALDEYFSRFIMKKEIKQAESKLQKLVKKQERILKSQ
LDTKDKYEKQSVSNHKRGDLIYANYSLVDEIVSTIKDAREKMDWNGIKNVIKENKTHPILSKIINVNEKNAELTLKLSAD
YGNGLIEDSVPVDLRKNAFENADIVYQKSKKFKNKVQGVIEALKISEKKLAELKEKEKLDSEVFKEKEEKIKKKERKVLK
WYEKLKWTVIGGYLIVAGKDATTNEMLIKRYVEKNDIVFHTLMEGAPFTIIRTEGSEEIPDENILFEVAKFAASHSRAWK
LGIGSADVYWVRPDQISKTAESGEYLKKGAFVIRGKRNFIRSAALELGIGIINYDGKLRLTTAPESVAKENFEKCILLKP
GKLKKSDLVKELLKEFSDFEVDDEDILRALPPGESEIKLK

Specific function: Unknown

COG id: COG1293

COG function: function code K; Predicted RNA-binding protein homologous to eukaryotic snRNP

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI32130516, Length=685, Percent_Identity=25.8394160583942, Blast_Score=171, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI32565397, Length=656, Percent_Identity=28.5060975609756, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI281362530, Length=359, Percent_Identity=33.1476323119777, Blast_Score=152, Evalue=7e-37,
Organism=Drosophila melanogaster, GI281362528, Length=359, Percent_Identity=33.1476323119777, Blast_Score=152, Evalue=7e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008532
- InterPro:   IPR008616
- InterPro:   IPR010979 [H]

Pfam domain/function: PF05670 DUF814; PF05833 FbpA [H]

EC number: NA

Molecular weight: Translated: 78553; Mature: 78553

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTEMTNVDISVAVSELQKVINGKLDKAFLVNNQDGKELILKVHIPEIGSREIAIGLGKY
CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEECCE
KYMTLTEYEREKPRNPPSFVMLLRKHLKNIKITSVAQHNFDRIVIFNFEWNELKYKLIIE
EEEEEEHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEHHHEEEEEEEE
LFGDGNAILLDSEDKIILPLKIERWSTRKIVPKEIYKFPPQKDLDPKNLDYSLAKKLFIE
EECCCCEEEEECCCCEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
EFEKEENKDTEVVRIISRTFGLAGVYSEEICLNSEIDKNLKNPKNEEIEKLFEGSKSFFK
HHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHCCCCCHHHHHHHHHCHHHHHH
KVFGELKPKSTLKNGEFVNIDPIDLKIHENLKENEIKHYESFLTALDEYFSRFIMKKEIK
HHHHCCCCCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAESKLQKLVKKQERILKSQLDTKDKYEKQSVSNHKRGDLIYANYSLVDEIVSTIKDARE
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHH
KMDWNGIKNVIKENKTHPILSKIINVNEKNAELTLKLSADYGNGLIEDSVPVDLRKNAFE
HCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHCCCC
NADIVYQKSKKFKNKVQGVIEALKISEKKLAELKEKEKLDSEVFKEKEEKIKKKERKVLK
CCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WYEKLKWTVIGGYLIVAGKDATTNEMLIKRYVEKNDIVFHTLMEGAPFTIIRTEGSEEIP
HHHHHEEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEHHCCCCEEEEECCCCCCCC
DENILFEVAKFAASHSRAWKLGIGSADVYWVRPDQISKTAESGEYLKKGAFVIRGKRNFI
CHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHHHHHHCCHHHHCCCEEEECCHHHH
RSAALELGIGIINYDGKLRLTTAPESVAKENFEKCILLKPGKLKKSDLVKELLKEFSDFE
HHHHHHHCCEEEECCCEEEEECCCHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
VDDEDILRALPPGESEIKLK
CCHHHHHHHCCCCCCCEEEC
>Mature Secondary Structure
MKTEMTNVDISVAVSELQKVINGKLDKAFLVNNQDGKELILKVHIPEIGSREIAIGLGKY
CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEECCE
KYMTLTEYEREKPRNPPSFVMLLRKHLKNIKITSVAQHNFDRIVIFNFEWNELKYKLIIE
EEEEEEHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEHHHEEEEEEEE
LFGDGNAILLDSEDKIILPLKIERWSTRKIVPKEIYKFPPQKDLDPKNLDYSLAKKLFIE
EECCCCEEEEECCCCEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
EFEKEENKDTEVVRIISRTFGLAGVYSEEICLNSEIDKNLKNPKNEEIEKLFEGSKSFFK
HHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHCCCCCHHHHHHHHHCHHHHHH
KVFGELKPKSTLKNGEFVNIDPIDLKIHENLKENEIKHYESFLTALDEYFSRFIMKKEIK
HHHHCCCCCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAESKLQKLVKKQERILKSQLDTKDKYEKQSVSNHKRGDLIYANYSLVDEIVSTIKDARE
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHH
KMDWNGIKNVIKENKTHPILSKIINVNEKNAELTLKLSADYGNGLIEDSVPVDLRKNAFE
HCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHCCCC
NADIVYQKSKKFKNKVQGVIEALKISEKKLAELKEKEKLDSEVFKEKEEKIKKKERKVLK
CCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WYEKLKWTVIGGYLIVAGKDATTNEMLIKRYVEKNDIVFHTLMEGAPFTIIRTEGSEEIP
HHHHHEEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEHHCCCCEEEEECCCCCCCC
DENILFEVAKFAASHSRAWKLGIGSADVYWVRPDQISKTAESGEYLKKGAFVIRGKRNFI
CHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHHHHHHCCHHHHCCCEEEECCHHHH
RSAALELGIGIINYDGKLRLTTAPESVAKENFEKCILLKPGKLKKSDLVKELLKEFSDFE
HHHHHHHCCEEEECCCEEEEECCCHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
VDDEDILRALPPGESEIKLK
CCHHHHHHHCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]