Click here to switch to the map view.

The map label for this gene is htr5 [H]

Identifier: 45358492

GI number: 45358492

Start: 917974

End: 919413

Strand: Direct

Name: htr5 [H]

Synonym: MMP0929

Alternate gene names: 45358492

Gene position: 917974-919413 (Clockwise)

Preceding gene: 45358491

Following gene: 45358498

Centisome position: 55.26

GC content: 32.64

Gene sequence:

>1440_bases
GTGAACTCAAAACTATATAATCATACGGTGATAGATATGAAAATGCAAAACCCCTATGTTCCAATATTAATTACGGCAAT
TTTATCCTCAGCAATCATTTTTGTCAGTTTTTATGCATTAATGGCAGCTTCATCTTTTAATTTAAATATATTATTCGTAG
TGTTTATTGTTTCAATTGTAATTTCTACAGCAATTGGATATGTAATTCTTAAAAAAACCTGTTTAAATAAAGTAGACAAC
TTTTTGCATTCTTCTTCAAAAATAACTGGAAAAGAATATGAACACTGTGATGAAGAAATGTTTAAAACCGTGATTTCTGA
CTTTGAAAAGTTAAAAAAAGATGAAAATTCTTTAAAAACCTACAAAAAAGATGTTTCAAATACATTTTCAGAACTCCACA
CAATATTTAAAAGTTTAGAACAGGGAGATTTTACAATAAGGGCAAACACAGACAGAAAATATAATGCTTTGCAGGTAACT
ACAAACAATGCAATAGTAAATGTCTCAACAATGGTAAACGACCTTAAAAAACAGATTGAATATTTAAATGCTGAACTTTT
AAAAGCAAAAGAAGATCTTGTAAGGGCTGAAGAAACTTCAGAACAGGTTGCGGATGCAGCAAGTCAGGTTGCAACTGCGG
CAGCTGACCAATCTGCAAAACTACAGGATGTATCTGACCAGCTTGAAGCAACATCAGAAATTACTTCGGCAGTAACTGAT
GCAGCAGATGATACTGTTACTGCAGCAATTGAAATTGAAGAAAACTCTGAAATGGGAGTTAAAAAAGTTGAAAATGCAAT
TGAAACAATGCAGAGTATCACCAATGTTATCGAAAACCTTGGAAAAGCAATTCAGGAACTTGGAAATGAATCCAAAAAAA
TTAACGAAGTTACAGTTTTAATTAAAGACGTTGCAGAGCAGACTGGTCTTTTAGCGTTAAATGCATCAATTGAAGCTGCT
CGTGCAGGGGATGCAGGAAAAGGCTTTGCAGTAGTTGCAAGTGAAATTAAATCTTTAGCAGAAGAAATTAAGAAATCAGT
TGAAGATATCAATAGAACAATTAACGGCGTAAACAGAAAAGTTGAAGCTACAATTGATCTAGGAATTTCAGGAAAAGACG
AAGTTGACAAAGGAGTTATTGCAATTGACGAAGTTAACGGTGCTTTCTTAAAGATAAAAGAAAGTGTAGAAACTACATCT
GAAAAAATAAATTCAATAAAAGTTAATGCTGAAAGAGCTGTAAACAACGTGGAAACCGCCCTTAAAGATTCACAGGATAT
TGCATCAATTTCAGAAGAGTTTGCAGCAACTGCAGAGGAATTAACTGCATCTGCAGAAGAACAGAGCAGAATTATGAACG
AAATTGACGATGCAATTGAAGAAATAACTAAATCATCTGAACAAATCTCAAAAGATGTAAGTAAATTTAAAACAGAATAA

Upstream 100 bases:

>100_bases
AAAATGGGCTTAAGAATAGCCTCTGAAGATCTTGGTGGCGACACAGGTCGAACTATAACATTATCACTTAAAGACGGCAG
TGTTTTAGTTAGAACTGGCA

Downstream 100 bases:

>100_bases
TTATTTTTTTAAAAAAGTAATTTTTTTAATTTATTTTTAATTTTTGATAAATTCTTTCCCGGTGGTTTGAAGGTTTAAAA
GCATTTCTTGAATCTCCGTG

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: HTP IV [H]

Number of amino acids: Translated: 479; Mature: 479

Protein sequence:

>479_residues
MNSKLYNHTVIDMKMQNPYVPILITAILSSAIIFVSFYALMAASSFNLNILFVVFIVSIVISTAIGYVILKKTCLNKVDN
FLHSSSKITGKEYEHCDEEMFKTVISDFEKLKKDENSLKTYKKDVSNTFSELHTIFKSLEQGDFTIRANTDRKYNALQVT
TNNAIVNVSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAVTD
AADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAA
RAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTS
EKINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQISKDVSKFKTE

Sequences:

>Translated_479_residues
MNSKLYNHTVIDMKMQNPYVPILITAILSSAIIFVSFYALMAASSFNLNILFVVFIVSIVISTAIGYVILKKTCLNKVDN
FLHSSSKITGKEYEHCDEEMFKTVISDFEKLKKDENSLKTYKKDVSNTFSELHTIFKSLEQGDFTIRANTDRKYNALQVT
TNNAIVNVSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAVTD
AADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAA
RAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTS
EKINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQISKDVSKFKTE
>Mature_479_residues
MNSKLYNHTVIDMKMQNPYVPILITAILSSAIIFVSFYALMAASSFNLNILFVVFIVSIVISTAIGYVILKKTCLNKVDN
FLHSSSKITGKEYEHCDEEMFKTVISDFEKLKKDENSLKTYKKDVSNTFSELHTIFKSLEQGDFTIRANTDRKYNALQVT
TNNAIVNVSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAVTD
AADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAA
RAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTS
EKINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQISKDVSKFKTE

Specific function: Potentially involved in chemo- or phototactic signal transduction [H]

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=276, Percent_Identity=27.8985507246377, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI2367378, Length=198, Percent_Identity=30.8080808080808, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788195, Length=189, Percent_Identity=29.6296296296296, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789453, Length=98, Percent_Identity=40.8163265306122, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788194, Length=143, Percent_Identity=35.6643356643357, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 52372; Mature: 52372

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKLYNHTVIDMKMQNPYVPILITAILSSAIIFVSFYALMAASSFNLNILFVVFIVSIV
CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ISTAIGYVILKKTCLNKVDNFLHSSSKITGKEYEHCDEEMFKTVISDFEKLKKDENSLKT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
YKKDVSNTFSELHTIFKSLEQGDFTIRANTDRKYNALQVTTNNAIVNVSTMVNDLKKQIE
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCEEEEHHHHHHHHHHHHH
YLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAVTD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVL
CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
IKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRK
HHHHHHHCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
VEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVETA
EEEEEEECCCCCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHEEECHHHHHHHHHHH
LKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQISKDVSKFKTE
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNSKLYNHTVIDMKMQNPYVPILITAILSSAIIFVSFYALMAASSFNLNILFVVFIVSIV
CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ISTAIGYVILKKTCLNKVDNFLHSSSKITGKEYEHCDEEMFKTVISDFEKLKKDENSLKT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
YKKDVSNTFSELHTIFKSLEQGDFTIRANTDRKYNALQVTTNNAIVNVSTMVNDLKKQIE
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCEEEEHHHHHHHHHHHHH
YLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAVTD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVL
CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
IKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRK
HHHHHHHCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
VEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVETA
EEEEEEECCCCCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHEEECHHHHHHHHHHH
LKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQISKDVSKFKTE
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8674984; 11016950 [H]