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The map label for this gene is dapF [H]

Identifier: 45358480

GI number: 45358480

Start: 905897

End: 906730

Strand: Direct

Name: dapF [H]

Synonym: MMP0917

Alternate gene names: 45358480

Gene position: 905897-906730 (Clockwise)

Preceding gene: 45358479

Following gene: 45358484

Centisome position: 54.53

GC content: 34.77

Gene sequence:

>834_bases
ATGAAATTTACAAAAATGCACGGCCTAGGCAACGATTATATCTACGTAGATGCAATTTCACAAAAAATTGAAAATCCAAA
CGAAATTTCCAAGTTTGTAAGCGACAGACACTTTGGAATCGGTTCAGATGGACTTGTATTAATTCTTCCATCAGATGTAG
CAGATTTTAAAATGAGGATGTTTAATTCAGATGGATCAGAAGCTGAAATGTGTGGTAATGCAATTAGATGCGTTGGAAAG
TTCGTTTATGATAAAAAAATGACGGATAAATCAACAATTACTATTGAAACACTTGCAGGAATAAAAGTTCTTGAAATGAC
CATTGAAAACGGTAAAGTTGTTTTAGTAAAAGTTGATATGGGAGAACCAATCTTAAAAGCAGAAGAAATTCCTGTTTTAA
GTGAAAAACATCCCGTAATTGATGAAGAAATTACTGCAAAAGATTACTGCTATAATTTTACATGTGTTTCAATGGGAAAC
CCTCATGCAATAACATACATTGAAAATGTAGACGAATTCCCGCTTGAGAAAATAGGCCCGTTATTTGAAATCCACGAAAA
ATTCCCGAGAAAAACAAATGTCGAATTTGTTGAATTAATCGACAAAAACACTGTTAAAATGAGAGTTTGGGAAAGAGGAG
CTGGCGAAACACTCGCATGCGGAACTGGCGCTTGTGCAGTTTTAACTGCATCTGTTTTAAAAGGATACGTGGGTAGAAAA
GCAACAGTCAAACTTCTCGGTGGAGATTTAACAATTGAGTGGAATGAATTTGATAAACACATTTACATGACTGGACCTGC
AACAACTGTCTTTGAAGGAGAAATTGACATTTAA

Upstream 100 bases:

>100_bases
TGTTATTGACGAATCAAAGATAAATGCTAAAGCTTAAATTATTTCTCATACTATTTTTAAAAATGATTTACAAAAATACC
CATATTATATGGTGGTTTTA

Downstream 100 bases:

>100_bases
TTAAAATTAATACTTAAAATTAATAATTAAACTTAAAAAAAAAGCTTAAAATTTTATTTTTTCAATTAAGTATTCTTCAA
AAAATTTATTAATTTCTTTT

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDVADFKMRMFNSDGSEAEMCGNAIRCVGK
FVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKVDMGEPILKAEEIPVLSEKHPVIDEEITAKDYCYNFTCVSMGN
PHAITYIENVDEFPLEKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVLKGYVGRK
ATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEIDI

Sequences:

>Translated_277_residues
MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDVADFKMRMFNSDGSEAEMCGNAIRCVGK
FVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKVDMGEPILKAEEIPVLSEKHPVIDEEITAKDYCYNFTCVSMGN
PHAITYIENVDEFPLEKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVLKGYVGRK
ATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEIDI
>Mature_277_residues
MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDVADFKMRMFNSDGSEAEMCGNAIRCVGK
FVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKVDMGEPILKAEEIPVLSEKHPVIDEEITAKDYCYNFTCVSMGN
PHAITYIENVDEFPLEKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVLKGYVGRK
ATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEIDI

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=281, Percent_Identity=39.1459074733096, Blast_Score=225, Evalue=2e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 30835; Mature: 30835

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDVADFKMRM
CCCEECCCCCCCEEEEEEHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHEE
FNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKVDM
ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEECCCEEEEEEECC
GEPILKAEEIPVLSEKHPVIDEEITAKDYCYNFTCVSMGNPHAITYIENVDEFPLEKIGP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCHHHHCH
LFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVLKGYVGRK
HHHHHHHCCCCCCCCEEEEECCCCEEEEEEECCCCCEEECCCCHHHHHHHHHHHHHCCCC
ATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEIDI
EEEEEECCEEEEEECCCCCEEEEECCCCEEEECCCCC
>Mature Secondary Structure
MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDVADFKMRM
CCCEECCCCCCCEEEEEEHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHEE
FNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKVDM
ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEECCCEEEEEEECC
GEPILKAEEIPVLSEKHPVIDEEITAKDYCYNFTCVSMGNPHAITYIENVDEFPLEKIGP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCHHHHCH
LFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVLKGYVGRK
HHHHHHHCCCCCCCCEEEEECCCCEEEEEEECCCCCEEECCCCHHHHHHHHHHHHHCCCC
ATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEIDI
EEEEEECCEEEEEECCCCCEEEEECCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA