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The map label for this gene is 45358123

Identifier: 45358123

GI number: 45358123

Start: 561273

End: 562034

Strand: Direct

Name: 45358123

Synonym: MMP0560

Alternate gene names: NA

Gene position: 561273-562034 (Clockwise)

Preceding gene: 45358122

Following gene: 45358136

Centisome position: 33.79

GC content: 29.53

Gene sequence:

>762_bases
ATGGATTTTAAAAAAATAAAGTATCAAAAAATAGGCGACATTTTAATCGTTAAAAAGAATTTAAACGATAACGAAATCGA
TTATTTAGTAAATAAGACAAAATGTAAAACTATTGTAAAATATAATACATATATCACGGGAGATTTGAGAACTCCAAAAA
TAAAAATACTTCATGGATCTGAAACCGAAACAATAAACAAGGAACATGGATGCCTCTTTAAAATCGATGTATCAAAAATA
ATGTGGAGCATGGGAAATTTAGAAGAGCGAAAGCGAATAAGTACTCTTTCAAACAGTGAAGAAATTGTTGTTGACATGTT
TGCAGGAATAGGATACTTTACAATTCCAATTGCAAAATATTCAAACCCTAAAACAATTTATGCTCTTGAATTAAATCCTG
ATTCTTATTACTACCTTTCTGAAAATATAAAATTAAATAAATTGGACAATGTAGTTCCCATTCTTGGAGATAATCGGGAT
TTTTCTTTGAAAAATGTTGCAGACCGAATTTCGATGGGTTATGTTTTAAAAACGCATAAATTTTTGGATAAAGCTTTTGA
GATACTGAAAAGAGATGGCGGAGTAATTCACTACCACGAAACAGTTCATGAAAATATATTGGAATCTCGTCCAATTGAGC
GTTTAAAATACCATTCAGAAAAAAACGGCTATAAATTGGATGAATACAAAATTAATAAAATAAAGAAGTATTCTCCGGGA
GTCTGGCACATCGTAGTCGATGCAGAATTTTCAAAAATTTAA

Upstream 100 bases:

>100_bases
GAATTTGGATTAAAAATTGCAGAAGCGCTTGGAAAATAAGTATTTCTCTTTTTAATTTTTAAATTTAGATTAATAATTAA
TTATAATTTACGTGAATGAC

Downstream 100 bases:

>100_bases
AAAACGTGAAAAATTATTTAATTCCTGAAATATTGCATTCAGGGCAACTTAAGCTATTTTCATCGTATTTTAATATATTA
TTTACCTTCTGGAGTGCACG

Product: SAM-binding motif-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MDFKKIKYQKIGDILIVKKNLNDNEIDYLVNKTKCKTIVKYNTYITGDLRTPKIKILHGSETETINKEHGCLFKIDVSKI
MWSMGNLEERKRISTLSNSEEIVVDMFAGIGYFTIPIAKYSNPKTIYALELNPDSYYYLSENIKLNKLDNVVPILGDNRD
FSLKNVADRISMGYVLKTHKFLDKAFEILKRDGGVIHYHETVHENILESRPIERLKYHSEKNGYKLDEYKINKIKKYSPG
VWHIVVDAEFSKI

Sequences:

>Translated_253_residues
MDFKKIKYQKIGDILIVKKNLNDNEIDYLVNKTKCKTIVKYNTYITGDLRTPKIKILHGSETETINKEHGCLFKIDVSKI
MWSMGNLEERKRISTLSNSEEIVVDMFAGIGYFTIPIAKYSNPKTIYALELNPDSYYYLSENIKLNKLDNVVPILGDNRD
FSLKNVADRISMGYVLKTHKFLDKAFEILKRDGGVIHYHETVHENILESRPIERLKYHSEKNGYKLDEYKINKIKKYSPG
VWHIVVDAEFSKI
>Mature_253_residues
MDFKKIKYQKIGDILIVKKNLNDNEIDYLVNKTKCKTIVKYNTYITGDLRTPKIKILHGSETETINKEHGCLFKIDVSKI
MWSMGNLEERKRISTLSNSEEIVVDMFAGIGYFTIPIAKYSNPKTIYALELNPDSYYYLSENIKLNKLDNVVPILGDNRD
FSLKNVADRISMGYVLKTHKFLDKAFEILKRDGGVIHYHETVHENILESRPIERLKYHSEKNGYKLDEYKINKIKKYSPG
VWHIVVDAEFSKI

Specific function: Unknown

COG id: COG2520

COG function: function code R; Predicted methyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase trmD family [H]

Homologues:

Organism=Homo sapiens, GI157388919, Length=206, Percent_Identity=29.6116504854369, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI145275187, Length=114, Percent_Identity=35.0877192982456, Blast_Score=68, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI193207541, Length=139, Percent_Identity=34.5323741007194, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193207539, Length=139, Percent_Identity=34.5323741007194, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193207537, Length=139, Percent_Identity=34.5323741007194, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI212646412, Length=153, Percent_Identity=28.7581699346405, Blast_Score=70, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6321861, Length=135, Percent_Identity=34.8148148148148, Blast_Score=73, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6323638, Length=208, Percent_Identity=27.4038461538462, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45551508, Length=164, Percent_Identity=31.7073170731707, Blast_Score=71, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003402 [H]

Pfam domain/function: PF02475 Met_10 [H]

EC number: NA

Molecular weight: Translated: 29478; Mature: 29478

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFKKIKYQKIGDILIVKKNLNDNEIDYLVNKTKCKTIVKYNTYITGDLRTPKIKILHGS
CCCHHCCCEECCCEEEEEECCCCCCHHEEEECCCEEEEEEEEEEEECCCCCCEEEEEECC
ETETINKEHGCLFKIDVSKIMWSMGNLEERKRISTLSNSEEIVVDMFAGIGYFTIPIAKY
CCCCCCCCCCEEEEEEHHHHHHHHCCHHHHHHHHHCCCCCCEEEEHHHCCCEEEEEEEEC
SNPKTIYALELNPDSYYYLSENIKLNKLDNVVPILGDNRDFSLKNVADRISMGYVLKTHK
CCCCEEEEEEECCCCEEEEECCEEEECCCCEEEEECCCCCCCHHHHHHHHHHCHHHHHHH
FLDKAFEILKRDGGVIHYHETVHENILESRPIERLKYHSEKNGYKLDEYKINKIKKYSPG
HHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCHHHHHHCCCCCCEECCCEEECHHEECCCC
VWHIVVDAEFSKI
EEEEEEECCCCCC
>Mature Secondary Structure
MDFKKIKYQKIGDILIVKKNLNDNEIDYLVNKTKCKTIVKYNTYITGDLRTPKIKILHGS
CCCHHCCCEECCCEEEEEECCCCCCHHEEEECCCEEEEEEEEEEEECCCCCCEEEEEECC
ETETINKEHGCLFKIDVSKIMWSMGNLEERKRISTLSNSEEIVVDMFAGIGYFTIPIAKY
CCCCCCCCCCEEEEEEHHHHHHHHCCHHHHHHHHHCCCCCCEEEEHHHCCCEEEEEEEEC
SNPKTIYALELNPDSYYYLSENIKLNKLDNVVPILGDNRDFSLKNVADRISMGYVLKTHK
CCCCEEEEEEECCCCEEEEECCEEEECCCCEEEEECCCCCCCHHHHHHHHHHCHHHHHHH
FLDKAFEILKRDGGVIHYHETVHENILESRPIERLKYHSEKNGYKLDEYKINKIKKYSPG
HHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCHHHHHHCCCCCCEECCCEEECHHEECCCC
VWHIVVDAEFSKI
EEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]