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The map label for this gene is xerD [C]

Identifier: 45358035

GI number: 45358035

Start: 468086

End: 469072

Strand: Direct

Name: xerD [C]

Synonym: MMP0472

Alternate gene names: 45358035

Gene position: 468086-469072 (Clockwise)

Preceding gene: 45358034

Following gene: 45358036

Centisome position: 28.18

GC content: 34.65

Gene sequence:

>987_bases
ATGGATGTAGTCAGTAAATTTTTAGTAGGCGCTGGAAAGAGAGACGCAGTAACTAAAACCCCTGCGATGAATAAATGGAT
CTCCGTGTTCAGAGAAGAGCGAGAATTTGACGGAATCAAAGAGAACACGATAATTGGAGATCTTACTAAACTAGGGGTTT
TCTTAGAATTTGCACAGCAGAGGCTTGAAAAAGAGCCAGATGAACTTTATAAAACTGATTTCATTAAATTTTTTAATTAT
CTGGAAAAAGAGAGAAAAATTTCAAAAAATACTCAGAATCGATACTTCAATTTATTAAAAGTATTTTATAGAGCTTTTAA
ACTTGATAATTTCATGGATTTCAGGGATGAATCAAACGAAAGAAAGAGGTTTTCAAGTTCGAGAATTGAAGTTAAACACT
ACGATGCAATAACTGAACAGGACCTTAATCTGGTGATTGCAAAGATCTTTGAAAACCAGAGCAGTACAAAAATAAGGGAT
CTTGTAGTTATAAGGATGCTCTGGGATACTGGTGCAAGAGTTTCTGAAGTTTTAAACTTAAAATATGAAGATTGTGACTT
TGAAAACGGGGAATTTCGGCTGAGAAACACGAAATCCCACGAAGAGCGAAAGGTAGTCTGTTCTAGTGACACTTTAGAGC
TTTTAAAGTGTCTTGCAAGTTACAATTTCAAAAAAGAACCAAAAGACTATCTTTTCCAGTCAACTAATCAAGAAAATCTT
GGAAAAATCGCGGATAGAAACCAGATTACGAGAACGTTTGGTCGAGCAGTTGATAAATTAAAAGAAGAAGAAAAGATCCA
GCAAAATAAACGATATGTGGTTCACTCTCTAAGACATGGAAGAGCAGTGGATCTATTAAATAAAGGAGTTCCAATCGATG
TTGTAAAAGAGATTTTGGGCCACAGATCATTAGAAACAACGCTCTATTATTCGCATTCAAGGCAGAGAAAAGAGCAGATG
CTTCAAGATATTAAAAAATTACTTTAA

Upstream 100 bases:

>100_bases
TCAGAAGAAGAACAAAAAATCATCAAAAAAGCCGGGAAATTAACTGGCCATTTGGTAAATTATGTAATATTAACCGAGAG
AGAAAACCAAGGCGTAGATT

Downstream 100 bases:

>100_bases
TCAATAATATCTATTTTTCAAGGACTATTTCGACATTTATAAATACTGTTTTTTGGATATTTTATTTGATAATTTTTGGG
AAAATTTGTTTAAACGGTGG

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MDVVSKFLVGAGKRDAVTKTPAMNKWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNY
LEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTKIRD
LVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENL
GKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQM
LQDIKKLL

Sequences:

>Translated_328_residues
MDVVSKFLVGAGKRDAVTKTPAMNKWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNY
LEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTKIRD
LVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENL
GKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQM
LQDIKKLL
>Mature_328_residues
MDVVSKFLVGAGKRDAVTKTPAMNKWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFIKFFNY
LEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTKIRD
LVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENL
GKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQM
LQDIKKLL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38854; Mature: 38854

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVVSKFLVGAGKRDAVTKTPAMNKWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQ
CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
RLEKEPDELYKTDFIKFFNYLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNE
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
RKRFSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNL
HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHC
KYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENL
CCCCCCCCCCCEEECCCCCHHHHHEECCCCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHH
GKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHC
HRSLETTLYYSHSRQRKEQMLQDIKKLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDVVSKFLVGAGKRDAVTKTPAMNKWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQ
CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
RLEKEPDELYKTDFIKFFNYLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNE
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
RKRFSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNL
HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHC
KYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENL
CCCCCCCCCCCEEECCCCCHHHHHEECCCCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHH
GKIADRNQITRTFGRAVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHC
HRSLETTLYYSHSRQRKEQMLQDIKKLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]