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The map label for this gene is ygcF [C]

Identifier: 45357640

GI number: 45357640

Start: 87961

End: 88689

Strand: Direct

Name: ygcF [C]

Synonym: MMP0077

Alternate gene names: 45357640

Gene position: 87961-88689 (Clockwise)

Preceding gene: 45357637

Following gene: 45357642

Centisome position: 5.3

GC content: 34.29

Gene sequence:

>729_bases
ATGATTAGGGAAGTGTTTTCCTCAATTATGGGCGAGGGAAAGTTTATTGGTAAAAGATTTATTTTTGTGAGATTTAAAGA
ATGTCCCCTTGACTGTATATATTGTGACGAGCCAAATGCTCCGGGGGGAACTGCAAGAGTCGAAGAAATTTCCGGATCAT
GCGAATTTATGGAATATCTAGAAATTGAACATGAACTTATTGAAATTATTGAAAAATTGAGGACGCCTGACCTTTTTGCA
GTTTCGTTTACTGGGGGAGAACCTTTGGTATATTCCAATAAAATAAAAGAATATTCTGAAATTTTAAAACATAAGGGATA
TAAGACGTTTTTAGAGAGCAACGGAATGTTTCCAGAACGGTTGGGTAGCTACGATTACGCTTCAATAGATATAAAGTTGC
CAGAACACTTTGAAAATAAAGACGACGATTTTTGGTATGGATTATATAAAAAGGAACTTGAAACGATTGAAAGACTCTAC
CTGGCAGGAACCGATGTTTATGCAAAAATTGTCGTGTTTGAAGAAACTTCTGAAGAATTAATTGAAAGAATCGCGATAGA
TTTATCAAAAATTGGAAATATAACACTTTGTATTCAGCCGGTATCACCAACTGATAAAATAAAAACAACTACTTCGAAAA
AAAAGATATTTGAATTAATGGCTATTTGTGGCAAGTATGTGGATGTAATGTGCACGCCACAAATCCACAAATGGATGGGA
ATGTTATAA

Upstream 100 bases:

>100_bases
TACACTTCATTTGCTAGTATATATAAGTATCTGAGTTCATTATTTGAGAACTTAACATTAAATACGTTTTGAATTTTAAA
AACGATTTATCGGTGGTTAA

Downstream 100 bases:

>100_bases
TATCTGTTTGCAAATTTAATAATCTTTTAATTTTTCTTTTAAAGAACTAATTCCCGTTCTATCGATTGTATCGCCAAATC
TTTCATGGGAATCTGCATTT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MIREVFSSIMGEGKFIGKRFIFVRFKECPLDCIYCDEPNAPGGTARVEEISGSCEFMEYLEIEHELIEIIEKLRTPDLFA
VSFTGGEPLVYSNKIKEYSEILKHKGYKTFLESNGMFPERLGSYDYASIDIKLPEHFENKDDDFWYGLYKKELETIERLY
LAGTDVYAKIVVFEETSEELIERIAIDLSKIGNITLCIQPVSPTDKIKTTTSKKKIFELMAICGKYVDVMCTPQIHKWMG
ML

Sequences:

>Translated_242_residues
MIREVFSSIMGEGKFIGKRFIFVRFKECPLDCIYCDEPNAPGGTARVEEISGSCEFMEYLEIEHELIEIIEKLRTPDLFA
VSFTGGEPLVYSNKIKEYSEILKHKGYKTFLESNGMFPERLGSYDYASIDIKLPEHFENKDDDFWYGLYKKELETIERLY
LAGTDVYAKIVVFEETSEELIERIAIDLSKIGNITLCIQPVSPTDKIKTTTSKKKIFELMAICGKYVDVMCTPQIHKWMG
ML
>Mature_242_residues
MIREVFSSIMGEGKFIGKRFIFVRFKECPLDCIYCDEPNAPGGTARVEEISGSCEFMEYLEIEHELIEIIEKLRTPDLFA
VSFTGGEPLVYSNKIKEYSEILKHKGYKTFLESNGMFPERLGSYDYASIDIKLPEHFENKDDDFWYGLYKKELETIERLY
LAGTDVYAKIVVFEETSEELIERIAIDLSKIGNITLCIQPVSPTDKIKTTTSKKKIFELMAICGKYVDVMCTPQIHKWMG
ML

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 27920; Mature: 27920

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIREVFSSIMGEGKFIGKRFIFVRFKECPLDCIYCDEPNAPGGTARVEEISGSCEFMEYL
CHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHCCCHHHHHHH
EIEHELIEIIEKLRTPDLFAVSFTGGEPLVYSNKIKEYSEILKHKGYKTFLESNGMFPER
HHHHHHHHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHCCHHHHHHCCCCCHHH
LGSYDYASIDIKLPEHFENKDDDFWYGLYKKELETIERLYLAGTDVYAKIVVFEETSEEL
HCCCCEEEEEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHH
IERIAIDLSKIGNITLCIQPVSPTDKIKTTTSKKKIFELMAICGKYVDVMCTPQIHKWMG
HHHHHHHHHHCCCEEEEEECCCCCCHHCCCHHHHHHHHHHHHHHHHHHEEECCHHHHHHC
ML
CC
>Mature Secondary Structure
MIREVFSSIMGEGKFIGKRFIFVRFKECPLDCIYCDEPNAPGGTARVEEISGSCEFMEYL
CHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHCCCHHHHHHH
EIEHELIEIIEKLRTPDLFAVSFTGGEPLVYSNKIKEYSEILKHKGYKTFLESNGMFPER
HHHHHHHHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHCCHHHHHHCCCCCHHH
LGSYDYASIDIKLPEHFENKDDDFWYGLYKKELETIERLYLAGTDVYAKIVVFEETSEEL
HCCCCEEEEEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHH
IERIAIDLSKIGNITLCIQPVSPTDKIKTTTSKKKIFELMAICGKYVDVMCTPQIHKWMG
HHHHHHHHHHCCCEEEEEECCCCCCHHCCCHHHHHHHHHHHHHHHHHHEEECCHHHHHHC
ML
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]