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The map label for this gene is scpB [H]

Identifier: 42523454

GI number: 42523454

Start: 1888200

End: 1889666

Strand: Direct

Name: scpB [H]

Synonym: Bd1977

Alternate gene names: 42523454

Gene position: 1888200-1889666 (Clockwise)

Preceding gene: 42523453

Following gene: 42523455

Centisome position: 49.91

GC content: 50.1

Gene sequence:

>1467_bases
ATGTCTGAAGAAAAAGACGATTTGATCAACGAAGAAATGAATCACGCTGAAGAATCTGAAGGCTTCGAAACTGAAGCTGA
CGTTGAAACTGACGAGCTTTCCGCCGATGGCATTGAGTCCGACGCCTCTGTATTCCTGCAGGAAGAAGAGGAATCGGAAG
GTTTCCTTCCGGAAGTGTCTGATGATGAAGTGGACGCCCTGGAGGCCACTGCAGAAGAAGACGAAGTGTCTGTCGACGGC
ACGGAGCTTGACGGTTTTGATTCCGCTGAAATTGAAGAAGTGGAATTCGTCGAGGAAGAGCGCCTTGAAAGCATCGTGGA
AAGCGTGCTGTTTGCTTCAGACAGACCTGTAAGTCTGGCTTCTTTGAAACTACTGTTCAAAGGGACCAACATCCGTGGTG
ACAAGATCCGCCGCGCCCTGGATCAGCTGGCCGTTGAATACGCTGGCGGCCGTCGTGGTGTGACCCTGGAAGAAGTTCCG
GGTGGATACCAGCTGCGCACTAAAATTGACAATATGGAATTCCTGAAGCGCACATTGAAAGCGCGTCAGTTCAAACTTTC
CGGCCCGGCTTTGGAAGTTCTTTCCATCGTGGCCTATAAACAGCCGACCGTGAAAGCGGAAGTGGACGAAATCCGCGGCG
TTGAATCCGGTCACTTGCTGCGTGCTTTGATGGAGAAAAATCTGGTTTGCTTCGAAGGTAAATCTGAACTTCCAGGCCGT
CCTATGCAGTACGGCACCACCAGAAAGTTCCTGGAGATCTTTGGTCTGAGAAGCTTGAAAGAGCTTCCAACCCTGTCCCA
GATTGATGAGCTTCTGCCGGATGGTATTGATGAACAGCAGGCGGAAGAAAAACCGACTCTTTCCACCATCACCGATAGCA
TGTCTGAAACTTACATTGGTTCTTACTCTCAAGGAGAGGAAGAGCTGATGAAGATCCAGGAACAGCTGGAGGACATCGCG
ACTTCTTCCAACTTCTTTGAGGAAGAAAAGCGCCGTCAGGCTGAAAAACGTGATCAGGAACGCGCTCAGAACATCCGTGA
TGCTTTGGCATTCGGCGAGCCGGTTTCCACTCGTGATCAAAACTGGCTGACGAAGTACGATGAGGCTTTGGCTGCGGGAA
CCACTTTGGTGGCCATGGCAGCTGAAAAGAAAGCCGCTGCTTTGGAAAACATGAAAAAGCCGGCAGTGACTGCTGAAAAC
GGCGAAGAAATCTCTGAGGAAGGATCTGAAGAGACTTTGGAAGCTTCCATGGACGAATCCGAGAGTGAATCTCTGGACGA
ATCCACCGACGGGGATGATTCCGAGCTGGAAGAAGCTGTCGTAGCATTTGATAACGACGAAGATCTGGATGAGGCTTCAG
ACGATCAATTATTCGCTGACTCTGATGATGAATCTTCCGAAGAAGAAGAGTTGCCATTCCTGGGTGAGGCGGACGACATT
GATGAAGAAGGTGAAGCTTCTGTTTAA

Upstream 100 bases:

>100_bases
TTGTTGATACAAATGTCGATGATATCGCCACGGACGACGAAATCTTGGCTGCTGAGAGTGAATTGTTTAAAGATGACGTG
ACGGAAGTGTAGAGGGGACC

Downstream 100 bases:

>100_bases
GACTCTTCTGAGTCTTTGGATCGTATATAATATCTTTGTGATGTTGGTGATGCCCAATGTGGGTGCCTATTTCGGGCGGG
TGACTGCAAACGTGGTCACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MSEEKDDLINEEMNHAEESEGFETEADVETDELSADGIESDASVFLQEEEESEGFLPEVSDDEVDALEATAEEDEVSVDG
TELDGFDSAEIEEVEFVEEERLESIVESVLFASDRPVSLASLKLLFKGTNIRGDKIRRALDQLAVEYAGGRRGVTLEEVP
GGYQLRTKIDNMEFLKRTLKARQFKLSGPALEVLSIVAYKQPTVKAEVDEIRGVESGHLLRALMEKNLVCFEGKSELPGR
PMQYGTTRKFLEIFGLRSLKELPTLSQIDELLPDGIDEQQAEEKPTLSTITDSMSETYIGSYSQGEEELMKIQEQLEDIA
TSSNFFEEEKRRQAEKRDQERAQNIRDALAFGEPVSTRDQNWLTKYDEALAAGTTLVAMAAEKKAAALENMKKPAVTAEN
GEEISEEGSEETLEASMDESESESLDESTDGDDSELEEAVVAFDNDEDLDEASDDQLFADSDDESSEEEELPFLGEADDI
DEEGEASV

Sequences:

>Translated_488_residues
MSEEKDDLINEEMNHAEESEGFETEADVETDELSADGIESDASVFLQEEEESEGFLPEVSDDEVDALEATAEEDEVSVDG
TELDGFDSAEIEEVEFVEEERLESIVESVLFASDRPVSLASLKLLFKGTNIRGDKIRRALDQLAVEYAGGRRGVTLEEVP
GGYQLRTKIDNMEFLKRTLKARQFKLSGPALEVLSIVAYKQPTVKAEVDEIRGVESGHLLRALMEKNLVCFEGKSELPGR
PMQYGTTRKFLEIFGLRSLKELPTLSQIDELLPDGIDEQQAEEKPTLSTITDSMSETYIGSYSQGEEELMKIQEQLEDIA
TSSNFFEEEKRRQAEKRDQERAQNIRDALAFGEPVSTRDQNWLTKYDEALAAGTTLVAMAAEKKAAALENMKKPAVTAEN
GEEISEEGSEETLEASMDESESESLDESTDGDDSELEEAVVAFDNDEDLDEASDDQLFADSDDESSEEEELPFLGEADDI
DEEGEASV
>Mature_487_residues
SEEKDDLINEEMNHAEESEGFETEADVETDELSADGIESDASVFLQEEEESEGFLPEVSDDEVDALEATAEEDEVSVDGT
ELDGFDSAEIEEVEFVEEERLESIVESVLFASDRPVSLASLKLLFKGTNIRGDKIRRALDQLAVEYAGGRRGVTLEEVPG
GYQLRTKIDNMEFLKRTLKARQFKLSGPALEVLSIVAYKQPTVKAEVDEIRGVESGHLLRALMEKNLVCFEGKSELPGRP
MQYGTTRKFLEIFGLRSLKELPTLSQIDELLPDGIDEQQAEEKPTLSTITDSMSETYIGSYSQGEEELMKIQEQLEDIAT
SSNFFEEEKRRQAEKRDQERAQNIRDALAFGEPVSTRDQNWLTKYDEALAAGTTLVAMAAEKKAAALENMKKPAVTAENG
EEISEEGSEETLEASMDESESESLDESTDGDDSELEEAVVAFDNDEDLDEASDDQLFADSDDESSEEEELPFLGEADDID
EEGEASV

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 54218; Mature: 54087

Theoretical pI: Translated: 3.75; Mature: 3.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEKDDLINEEMNHAEESEGFETEADVETDELSADGIESDASVFLQEEEESEGFLPEVS
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCHHHEEECCCCCCCCCCCCC
DDEVDALEATAEEDEVSVDGTELDGFDSAEIEEVEFVEEERLESIVESVLFASDRPVSLA
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
SLKLLFKGTNIRGDKIRRALDQLAVEYAGGRRGVTLEEVPGGYQLRTKIDNMEFLKRTLK
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEHHHHHHHHHHHHHH
ARQFKLSGPALEVLSIVAYKQPTVKAEVDEIRGVESGHLLRALMEKNLVCFEGKSELPGR
HHHEECCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCC
PMQYGTTRKFLEIFGLRSLKELPTLSQIDELLPDGIDEQQAEEKPTLSTITDSMSETYIG
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHCC
SYSQGEEELMKIQEQLEDIATSSNFFEEEKRRQAEKRDQERAQNIRDALAFGEPVSTRDQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
NWLTKYDEALAAGTTLVAMAAEKKAAALENMKKPAVTAENGEEISEEGSEETLEASMDES
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHCCCC
ESESLDESTDGDDSELEEAVVAFDNDEDLDEASDDQLFADSDDESSEEEELPFLGEADDI
HHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCHHCCCCCCCCCCC
DEEGEASV
CCCCCCCC
>Mature Secondary Structure 
SEEKDDLINEEMNHAEESEGFETEADVETDELSADGIESDASVFLQEEEESEGFLPEVS
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCHHHEEECCCCCCCCCCCCC
DDEVDALEATAEEDEVSVDGTELDGFDSAEIEEVEFVEEERLESIVESVLFASDRPVSLA
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
SLKLLFKGTNIRGDKIRRALDQLAVEYAGGRRGVTLEEVPGGYQLRTKIDNMEFLKRTLK
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEHHHHHHHHHHHHHH
ARQFKLSGPALEVLSIVAYKQPTVKAEVDEIRGVESGHLLRALMEKNLVCFEGKSELPGR
HHHEECCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCC
PMQYGTTRKFLEIFGLRSLKELPTLSQIDELLPDGIDEQQAEEKPTLSTITDSMSETYIG
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHCC
SYSQGEEELMKIQEQLEDIATSSNFFEEEKRRQAEKRDQERAQNIRDALAFGEPVSTRDQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
NWLTKYDEALAAGTTLVAMAAEKKAAALENMKKPAVTAENGEEISEEGSEETLEASMDES
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHCCCC
ESESLDESTDGDDSELEEAVVAFDNDEDLDEASDDQLFADSDDESSEEEELPFLGEADDI
HHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCHHCCCCCCCCCCC
DEEGEASV
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]