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The map label for this gene is ywhC [H]

Identifier: 42523452

GI number: 42523452

Start: 1886384

End: 1887046

Strand: Direct

Name: ywhC [H]

Synonym: Bd1975

Alternate gene names: 42523452

Gene position: 1886384-1887046 (Clockwise)

Preceding gene: 42523451

Following gene: 42523453

Centisome position: 49.87

GC content: 51.28

Gene sequence:

>663_bases
ATGGATATGATGGAAATCGGCGCCAAGATTGGTGTCTACTTTATTCCTTTTCTTTTTGCACTTTGCTTCCACGAGTTTGC
GCACGGTTGGGTGGCGCGTCTACGTGGGGACAACACTGCGGAGCAGATGGGTCGTTTGACTCTGAATCCGGTGGCACACA
TGGATTTGATCGGGACGTTGATTCTTCCGATCGCGGCCATTGTATTTTCTTCGCCGATCTTTTTTGGTTGGGCGAAACCG
GTGCCGGTGAATTCCCGCAACCTTAAAAACCCTCGTGTGGATATGTTCTGGATCGCTTTGGCGGGTCCACTTTCGAACAT
CCTGCTGGCGTTTGTGGGCGCTTTTGCGATTGCTCTGGTGGCCAAGTACTACTCTTTCGGCATGTATGCCAAAGGGGCGG
TGGCGATTCTTCAGACCTTTATTGTTACCAACATGTTCCTGGCTGTTTTCAATCTTTTGCCGATGCATCCGCTGGATGGT
GGCAAGGTGCTGGCGCGCTTCCTGCCTGCCAGCTTGAATTATAAGCTTGAACAGAATGAACACATCACCAGCATGGTTTT
GATGGTGCTGGTGTTGACGGGGATGTTGCGCTTCCTGGCTGAGCCGGTGATCTGGAGTTCTCAGCACCTGATCAATCTTG
CATTGAATGGGGTGGGGGTTTAA

Upstream 100 bases:

>100_bases
TTTTCTCTTAACAAGCTGTGTTAAGCTGAATTGCACTTTAAATGTGCAAGTGTTTTATCGCACTAGACATGAGTCTAGGT
GTGTTTTAGCGTGAGGTTGT

Downstream 100 bases:

>100_bases
GGCTTTGCTGCGGCGCAAACGCGTCGGGTGGGGCCTTTAAAGAGTTGTTGAATAATCCAAAGCCGCTTGATTCAATCTTC
GGCGTTTGGACGGGGACTGC

Product: putative Zn-dependent protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MDMMEIGAKIGVYFIPFLFALCFHEFAHGWVARLRGDNTAEQMGRLTLNPVAHMDLIGTLILPIAAIVFSSPIFFGWAKP
VPVNSRNLKNPRVDMFWIALAGPLSNILLAFVGAFAIALVAKYYSFGMYAKGAVAILQTFIVTNMFLAVFNLLPMHPLDG
GKVLARFLPASLNYKLEQNEHITSMVLMVLVLTGMLRFLAEPVIWSSQHLINLALNGVGV

Sequences:

>Translated_220_residues
MDMMEIGAKIGVYFIPFLFALCFHEFAHGWVARLRGDNTAEQMGRLTLNPVAHMDLIGTLILPIAAIVFSSPIFFGWAKP
VPVNSRNLKNPRVDMFWIALAGPLSNILLAFVGAFAIALVAKYYSFGMYAKGAVAILQTFIVTNMFLAVFNLLPMHPLDG
GKVLARFLPASLNYKLEQNEHITSMVLMVLVLTGMLRFLAEPVIWSSQHLINLALNGVGV
>Mature_220_residues
MDMMEIGAKIGVYFIPFLFALCFHEFAHGWVARLRGDNTAEQMGRLTLNPVAHMDLIGTLILPIAAIVFSSPIFFGWAKP
VPVNSRNLKNPRVDMFWIALAGPLSNILLAFVGAFAIALVAKYYSFGMYAKGAVAILQTFIVTNMFLAVFNLLPMHPLDG
GKVLARFLPASLNYKLEQNEHITSMVLMVLVLTGMLRFLAEPVIWSSQHLINLALNGVGV

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24281; Mature: 24281

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMMEIGAKIGVYFIPFLFALCFHEFAHGWVARLRGDNTAEQMGRLTLNPVAHMDLIGTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHH
ILPIAAIVFSSPIFFGWAKPVPVNSRNLKNPRVDMFWIALAGPLSNILLAFVGAFAIALV
HHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHH
AKYYSFGMYAKGAVAILQTFIVTNMFLAVFNLLPMHPLDGGKVLARFLPASLNYKLEQNE
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEECCCC
HITSMVLMVLVLTGMLRFLAEPVIWSSQHLINLALNGVGV
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MDMMEIGAKIGVYFIPFLFALCFHEFAHGWVARLRGDNTAEQMGRLTLNPVAHMDLIGTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHH
ILPIAAIVFSSPIFFGWAKPVPVNSRNLKNPRVDMFWIALAGPLSNILLAFVGAFAIALV
HHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHH
AKYYSFGMYAKGAVAILQTFIVTNMFLAVFNLLPMHPLDGGKVLARFLPASLNYKLEQNE
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEECCCC
HITSMVLMVLVLTGMLRFLAEPVIWSSQHLINLALNGVGV
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]