| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is glnD [H]
Identifier: 42523432
GI number: 42523432
Start: 1869613
End: 1871922
Strand: Direct
Name: glnD [H]
Synonym: Bd1955
Alternate gene names: 42523432
Gene position: 1869613-1871922 (Clockwise)
Preceding gene: 42523431
Following gene: 42523435
Centisome position: 49.42
GC content: 50.09
Gene sequence:
>2310_bases ATGGCCCACAAGACGTTTTTGACAGCCGAGCAGTTTCAACAGGCGCAGGAAATCCTGACTCCCCCTCTGATGACACCGGA CGGGGATGTGCGCCAGGTGTTTTGTTTTTCCTCGGAAAGTCTGTCCCACTGGCTGGGCACCAAATTAGAAGAAATACTGA AAGAAAACCCACAGTGGCGCGACACCCATCCCATCATGCTGGGGTCCTGGGCCCGGGGGGAACTAAGTCCTAAATCCGAT ATCGACATCCTTTTTTGTGGCGATGAGGCGCAAGTCAAAGCCTTCACCGATCATCTGCATGAGCGTGGTTTAAAGCTTCG CTATCGCATGCCTTTGAATATGGAAGACTGGACCGAAGGGGTTGAGGCCTTCGACATTCTGGCGCTGTTAAAAGCAAAGC CTTTGACGGCCGAAGGGGCCCGAAAGCTGTTTGAACAGCAAAAGAACATCTGGGCCCGTAAAAAGCATTTTCGTCGCATT CTGCTGAAAGCTGTTAAGGACGAACGCAAGAACCGTGAAAAGCGTTTTGATTCCATCACCAACTATCTGGAGCCCAGTAT CAAATTTGGCCCCGGAGGTTTGCGGGATCTGGAGCAGGGTCTGCAGATCTATGAACTGTTCGCGGAAAAGTTCAACAATC CCGGCCACGCCCTGAATGTGCTTCAGTACTATCGCAGTTATTTCCTGAGCTTGCGGCAGAAGCTTCATCTGGATGGTCAC GGTGATATTTTATCCAGTGCCGTGCAGTTTGATCTGGGAAAATGGATGGGCTTTAAATCCCATAAGGACTTCATGCGCAG CCTGCAAAGAGGTCTGTCTCGTGTGAGCTTCTATTCAGACTGGATTGTTGAAGTTGCCGAAGCTTCGGAAAAAGACCTGC GCAAAATTGAAAGTGGCACTTTTAAAAAGTTCGAGGATTTTTTAACTGCGTTACATAAGAGTTCGCGCGTTCTGGTGCAA AAGAAAGTCCGCGAGAATCTGGATTCTCTCATCCCGGATAAGTTGGTGAAAACCATGGCCAAACGCCGCGGTAAAGCACT GGATGAAGTTTTGGATGTGAAAGAATCCGACGAGTTCCTGGTCAGCGTGTTTCGTTCCCGCCTGATCGACAAGCTGGTGC CAGAGGTCCGCCGTCTGGTGGGTTATGTTCAGCACGATCAGTATCACAGATTCACGGCAGATTCCCACATCATGCAGGCT TGTCGTGAAGTAAAACGTATCTATAAAAAGCCCTCTGAATTGGGGCCGATGAAATTCATCAGCAAGGATCTGACCAAAGA AGACTGGAAGATTCTGACCTGGTCCTGTTTGTATCACGATCTTGCCAAGGGTCTTGAAAGTGCCGAGCACCATTCAGACT TGGGCGTGATGATTGTTGAAAGAGATTTCAGAAGCTACGGATTTTCAAAAGCTTTCACCGATGAAGTGAAGTGGATGGTG CAAAACCATCTGGAGCTTTCGCAAGCCGCCTTCCGCAAAAACCCGAAGGACCCCAAGGTCTGGCAGGAGCTGCGTGAAAA AGGAATTTCTGATGCGCGTCTTCTTCGTTTGGCGCTGTTCACGGCGATCGACATTCGCGCCACCAATCCCGAAGCGTGGA ATGACTGGAAAGCGAAACTTTTAAAGGACTTGGTCTTAAATCTTCAATCCAAACGTGCGCAGAACTATTTTGATTTCGAG TCGTTAAAGAAACGCAAGAAGTTGAATCTCAGTGCTGAAGTGGTGGAAGAGCTGGGCCTTCAGCTGCTTGAAAGTGTTTC TTTAACAGATCTGGTGGATGACTTGAAGAAAGCCGAAACCAGCGAGGTCTCGTTAAAACCACGCATGCTAAAAACCCGCA AAGGCGAGCTGTGGATCCGCTTCCACGAGAAAAAAGACCGTCGTGGTCTTTTGAGTGACTACGTAGGCCAGCTTTATTCT TTGGGTCTGGGGATTCGACACGCCTCCATTCATACGCTGCCCAAGGTCGGCGTCTATGACTGGTTCCAGGTGACCAGTTC CCGCAACCTTGCAGCTCTGTCCAAGATGATCGAAAATGCGTCGGTGCAAAGCAAGCCCGTGCCGGCGGTGAAGTTTGATA CGATTCAGATTGTCAGTGCGGATGATAAGGAATGGGTGGTCAGCTTTAAGGGGGCCGATCAGCCGGGGTTGCTCGCATCT GCCGCCAAAGCCTTGAGTGATGCGGGGATGAGTATCAAGTCCGCCCGCGTGCACACGTGGGGTCGTCAGGTGGATGATAT TTTTGTAGTGAAGCCATCAGGCGATGCCCAGGAACTGGTGAAGAGTCTTTCTGAAAAGCTCGGATCTTAG
Upstream 100 bases:
>100_bases GATGTTATGAATCAGGTCGCTAAATGGAAAGAGATCGTCGAGCGCGTTTAGACTTGAGTCGGCTGGCAAATTCGGTGATC CTTTAAAGTCAGAGGACTTT
Downstream 100 bases:
>100_bases TAGCCCCTAAAAACAAAAAGAGCCCTCTGGGGGCTCTTTTAATTTCAACTACAGACTAGTTGTTTTTCTTTTTCGCCGCA CCAGTGATACCGGTGTGGTT
Product: protein-P-II uridylyltransferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 769; Mature: 768
Protein sequence:
>769_residues MAHKTFLTAEQFQQAQEILTPPLMTPDGDVRQVFCFSSESLSHWLGTKLEEILKENPQWRDTHPIMLGSWARGELSPKSD IDILFCGDEAQVKAFTDHLHERGLKLRYRMPLNMEDWTEGVEAFDILALLKAKPLTAEGARKLFEQQKNIWARKKHFRRI LLKAVKDERKNREKRFDSITNYLEPSIKFGPGGLRDLEQGLQIYELFAEKFNNPGHALNVLQYYRSYFLSLRQKLHLDGH GDILSSAVQFDLGKWMGFKSHKDFMRSLQRGLSRVSFYSDWIVEVAEASEKDLRKIESGTFKKFEDFLTALHKSSRVLVQ KKVRENLDSLIPDKLVKTMAKRRGKALDEVLDVKESDEFLVSVFRSRLIDKLVPEVRRLVGYVQHDQYHRFTADSHIMQA CREVKRIYKKPSELGPMKFISKDLTKEDWKILTWSCLYHDLAKGLESAEHHSDLGVMIVERDFRSYGFSKAFTDEVKWMV QNHLELSQAAFRKNPKDPKVWQELREKGISDARLLRLALFTAIDIRATNPEAWNDWKAKLLKDLVLNLQSKRAQNYFDFE SLKKRKKLNLSAEVVEELGLQLLESVSLTDLVDDLKKAETSEVSLKPRMLKTRKGELWIRFHEKKDRRGLLSDYVGQLYS LGLGIRHASIHTLPKVGVYDWFQVTSSRNLAALSKMIENASVQSKPVPAVKFDTIQIVSADDKEWVVSFKGADQPGLLAS AAKALSDAGMSIKSARVHTWGRQVDDIFVVKPSGDAQELVKSLSEKLGS
Sequences:
>Translated_769_residues MAHKTFLTAEQFQQAQEILTPPLMTPDGDVRQVFCFSSESLSHWLGTKLEEILKENPQWRDTHPIMLGSWARGELSPKSD IDILFCGDEAQVKAFTDHLHERGLKLRYRMPLNMEDWTEGVEAFDILALLKAKPLTAEGARKLFEQQKNIWARKKHFRRI LLKAVKDERKNREKRFDSITNYLEPSIKFGPGGLRDLEQGLQIYELFAEKFNNPGHALNVLQYYRSYFLSLRQKLHLDGH GDILSSAVQFDLGKWMGFKSHKDFMRSLQRGLSRVSFYSDWIVEVAEASEKDLRKIESGTFKKFEDFLTALHKSSRVLVQ KKVRENLDSLIPDKLVKTMAKRRGKALDEVLDVKESDEFLVSVFRSRLIDKLVPEVRRLVGYVQHDQYHRFTADSHIMQA CREVKRIYKKPSELGPMKFISKDLTKEDWKILTWSCLYHDLAKGLESAEHHSDLGVMIVERDFRSYGFSKAFTDEVKWMV QNHLELSQAAFRKNPKDPKVWQELREKGISDARLLRLALFTAIDIRATNPEAWNDWKAKLLKDLVLNLQSKRAQNYFDFE SLKKRKKLNLSAEVVEELGLQLLESVSLTDLVDDLKKAETSEVSLKPRMLKTRKGELWIRFHEKKDRRGLLSDYVGQLYS LGLGIRHASIHTLPKVGVYDWFQVTSSRNLAALSKMIENASVQSKPVPAVKFDTIQIVSADDKEWVVSFKGADQPGLLAS AAKALSDAGMSIKSARVHTWGRQVDDIFVVKPSGDAQELVKSLSEKLGS >Mature_768_residues AHKTFLTAEQFQQAQEILTPPLMTPDGDVRQVFCFSSESLSHWLGTKLEEILKENPQWRDTHPIMLGSWARGELSPKSDI DILFCGDEAQVKAFTDHLHERGLKLRYRMPLNMEDWTEGVEAFDILALLKAKPLTAEGARKLFEQQKNIWARKKHFRRIL LKAVKDERKNREKRFDSITNYLEPSIKFGPGGLRDLEQGLQIYELFAEKFNNPGHALNVLQYYRSYFLSLRQKLHLDGHG DILSSAVQFDLGKWMGFKSHKDFMRSLQRGLSRVSFYSDWIVEVAEASEKDLRKIESGTFKKFEDFLTALHKSSRVLVQK KVRENLDSLIPDKLVKTMAKRRGKALDEVLDVKESDEFLVSVFRSRLIDKLVPEVRRLVGYVQHDQYHRFTADSHIMQAC REVKRIYKKPSELGPMKFISKDLTKEDWKILTWSCLYHDLAKGLESAEHHSDLGVMIVERDFRSYGFSKAFTDEVKWMVQ NHLELSQAAFRKNPKDPKVWQELREKGISDARLLRLALFTAIDIRATNPEAWNDWKAKLLKDLVLNLQSKRAQNYFDFES LKKRKKLNLSAEVVEELGLQLLESVSLTDLVDDLKKAETSEVSLKPRMLKTRKGELWIRFHEKKDRRGLLSDYVGQLYSL GLGIRHASIHTLPKVGVYDWFQVTSSRNLAALSKMIENASVQSKPVPAVKFDTIQIVSADDKEWVVSFKGADQPGLLASA AKALSDAGMSIKSARVHTWGRQVDDIFVVKPSGDAQELVKSLSEKLGS
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=462, Percent_Identity=25.974025974026, Blast_Score=106, Evalue=7e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 88481; Mature: 88350
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: PS00063 ALDOKETO_REDUCTASE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHKTFLTAEQFQQAQEILTPPLMTPDGDVRQVFCFSSESLSHWLGTKLEEILKENPQWR CCCCHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCC DTHPIMLGSWARGELSPKSDIDILFCGDEAQVKAFTDHLHERGLKLRYRMPLNMEDWTEG CCCCEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH VEAFDILALLKAKPLTAEGARKLFEQQKNIWARKKHFRRILLKAVKDERKNREKRFDSIT HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NYLEPSIKFGPGGLRDLEQGLQIYELFAEKFNNPGHALNVLQYYRSYFLSLRQKLHLDGH HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC GDILSSAVQFDLGKWMGFKSHKDFMRSLQRGLSRVSFYSDWIVEVAEASEKDLRKIESGT HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC FKKFEDFLTALHKSSRVLVQKKVRENLDSLIPDKLVKTMAKRRGKALDEVLDVKESDEFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHCCCCCHHHH VSVFRSRLIDKLVPEVRRLVGYVQHDQYHRFTADSHIMQACREVKRIYKKPSELGPMKFI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHH SKDLTKEDWKILTWSCLYHDLAKGLESAEHHSDLGVMIVERDFRSYGFSKAFTDEVKWMV HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCHHHHHHHHHHH QNHLELSQAAFRKNPKDPKVWQELREKGISDARLLRLALFTAIDIRATNPEAWNDWKAKL HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHEEEECCCCCCHHHHHHH LKDLVLNLQSKRAQNYFDFESLKKRKKLNLSAEVVEELGLQLLESVSLTDLVDDLKKAET HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SEVSLKPRMLKTRKGELWIRFHEKKDRRGLLSDYVGQLYSLGLGIRHASIHTLPKVGVYD CCCCCCHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHH WFQVTSSRNLAALSKMIENASVQSKPVPAVKFDTIQIVSADDKEWVVSFKGADQPGLLAS HHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEECEEEEEECCCCEEEEEECCCCCCCHHHH AAKALSDAGMSIKSARVHTWGRQVDDIFVVKPSGDAQELVKSLSEKLGS HHHHHHHCCCCHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCC >Mature Secondary Structure AHKTFLTAEQFQQAQEILTPPLMTPDGDVRQVFCFSSESLSHWLGTKLEEILKENPQWR CCCHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCC DTHPIMLGSWARGELSPKSDIDILFCGDEAQVKAFTDHLHERGLKLRYRMPLNMEDWTEG CCCCEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH VEAFDILALLKAKPLTAEGARKLFEQQKNIWARKKHFRRILLKAVKDERKNREKRFDSIT HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NYLEPSIKFGPGGLRDLEQGLQIYELFAEKFNNPGHALNVLQYYRSYFLSLRQKLHLDGH HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC GDILSSAVQFDLGKWMGFKSHKDFMRSLQRGLSRVSFYSDWIVEVAEASEKDLRKIESGT HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC FKKFEDFLTALHKSSRVLVQKKVRENLDSLIPDKLVKTMAKRRGKALDEVLDVKESDEFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHCCCCCHHHH VSVFRSRLIDKLVPEVRRLVGYVQHDQYHRFTADSHIMQACREVKRIYKKPSELGPMKFI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHH SKDLTKEDWKILTWSCLYHDLAKGLESAEHHSDLGVMIVERDFRSYGFSKAFTDEVKWMV HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCHHHHHHHHHHH QNHLELSQAAFRKNPKDPKVWQELREKGISDARLLRLALFTAIDIRATNPEAWNDWKAKL HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHEEEECCCCCCHHHHHHH LKDLVLNLQSKRAQNYFDFESLKKRKKLNLSAEVVEELGLQLLESVSLTDLVDDLKKAET HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SEVSLKPRMLKTRKGELWIRFHEKKDRRGLLSDYVGQLYSLGLGIRHASIHTLPKVGVYD CCCCCCHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHH WFQVTSSRNLAALSKMIENASVQSKPVPAVKFDTIQIVSADDKEWVVSFKGADQPGLLAS HHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEECEEEEEECCCCEEEEEECCCCCCCHHHH AAKALSDAGMSIKSARVHTWGRQVDDIFVVKPSGDAQELVKSLSEKLGS HHHHHHHCCCCHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]