| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is mpl [H]
Identifier: 42523429
GI number: 42523429
Start: 1864805
End: 1866160
Strand: Direct
Name: mpl [H]
Synonym: Bd1952
Alternate gene names: 42523429
Gene position: 1864805-1866160 (Clockwise)
Preceding gene: 42523428
Following gene: 42523431
Centisome position: 49.29
GC content: 49.48
Gene sequence:
>1356_bases ATGGCCTCCATGGCAGGTCTTTTGAAAGACCGTGGCTTTAAAATCACCGGCAGTGATTCCAATCCGTATCCTCCGATGTC AACCCAGCTGGAAAGTCTGGGCATCAGTATCATGAAAGGCTACAAAGCCGAAAATCTGCATCCGAAGCCGGACTTCGTGA TCGTGGGGAACGTGATTTCTGCGAGCAACGAGGAAGCTCAGGAGCTGATGAAGCTGGGCATCCCGTATACTTCTTTGCCA AAAGCGATGGGTGAATTCATCATCGAAAATCGTGAAAGCGTTGTGATCTCCGGTACACACGGGAAAACCACAACAACTTC CATGATGGCGTGGGTGGCAGAAAATGCCGGAGTAAAACCGGGTTTCCTGATCGGGGGGATTCCGAAGAACTTCTCTCAAA GTTTCAAAAATCCGGAAGACAATTACTTCATCATCGAAGGTGATGAATACGACACGGCCTTCTTCGATAAAGTTCCAAAG TTCATTCACTATCGTCCAAAACACGTGATCCTGACTTCGGTGGAGTTTGATCACGCGGATATCTATAAAGACCTGGATGA CGTGAAAAAATCCTTCGCTCGTTTGATGGATCTTCTTCCTGAAAATGGAACGTTGCTGGCTTGCGCGGAAGACGCCAATG TGATGGAGCTTCGCAAGCTTACCAAGTGCAAAAACTCCTTCACTTACGGCTTTGGCGCTGAGGCGGATTTCCGTGCGAAG ATCATGTTCCAAAACGCCAATGGTCTGGGCTTTGAAGTTCATCACCGTGGCGAGATCATGGGCCCTTATGCTATGCAGAT CACGGGTGAATACAACGTCCTGAATGCCACAGCTGTTGTGGCGATGTCCAAGATGCTGGGCTTCTCTGAAAACCGCATTC AGATCGCATTGGAATCCTTCGAAGGTGTGAAGCGCCGTCAGGAAATTCTGGGTGAACCCAACGGTATTTTGGTGATTGAA GATTTCGCCCACCACCCAACAGCGGTGCGTGAAACAGTGAAAGGCATTCAAAAGAAATACCCGGGCCGCAAAGTGTTCTC GGTGTTTGAGCCAAGAAGTGCGACGTCCCGCCGTAAAGTCTTCCAGAAAGACTATGTGGAGGCGTTCAAGGGCTCTCACG AAGTTCTTCTGGCAAAAGCTTTTGATCAGACCAAAATCGACGAAGAAAACCGTTTCTCCACGCATGAGCTGGTCGATGAC CTCAAGAAAACCCATGTGACCGCAGCGGACTTCGATACAGCTGACGACATCGTCGCAGCCTTGAAATCCAAAGCCCACAA AGGCGACGTCATCCTAATCATGAGCAACGGCGGCTTCGACGGCATCTACACCAAACTCCTAAAAGCCCTCGAATAA
Upstream 100 bases:
>100_bases ATTCATAATTGGATTGTTGAAAACTACAGAAGAAGTGGACTTTAAGATGAATATCAAACCAGGCAGTCACATTCACTTGA TGGGTATTTGCGGGACGGCG
Downstream 100 bases:
>100_bases AAAAGGTACCTGCTTACTTTTGCATAAACGCCGCGTCGGTCTTCTCTCCTGATCTTAGTAAGGTAGAGAAGTGAGTCGAT GCGGTCGCTGATTCTTTCTA
Product: hypothetical protein
Products: NA
Alternate protein names: Murein peptide ligase [H]
Number of amino acids: Translated: 451; Mature: 450
Protein sequence:
>451_residues MASMAGLLKDRGFKITGSDSNPYPPMSTQLESLGISIMKGYKAENLHPKPDFVIVGNVISASNEEAQELMKLGIPYTSLP KAMGEFIIENRESVVISGTHGKTTTTSMMAWVAENAGVKPGFLIGGIPKNFSQSFKNPEDNYFIIEGDEYDTAFFDKVPK FIHYRPKHVILTSVEFDHADIYKDLDDVKKSFARLMDLLPENGTLLACAEDANVMELRKLTKCKNSFTYGFGAEADFRAK IMFQNANGLGFEVHHRGEIMGPYAMQITGEYNVLNATAVVAMSKMLGFSENRIQIALESFEGVKRRQEILGEPNGILVIE DFAHHPTAVRETVKGIQKKYPGRKVFSVFEPRSATSRRKVFQKDYVEAFKGSHEVLLAKAFDQTKIDEENRFSTHELVDD LKKTHVTAADFDTADDIVAALKSKAHKGDVILIMSNGGFDGIYTKLLKALE
Sequences:
>Translated_451_residues MASMAGLLKDRGFKITGSDSNPYPPMSTQLESLGISIMKGYKAENLHPKPDFVIVGNVISASNEEAQELMKLGIPYTSLP KAMGEFIIENRESVVISGTHGKTTTTSMMAWVAENAGVKPGFLIGGIPKNFSQSFKNPEDNYFIIEGDEYDTAFFDKVPK FIHYRPKHVILTSVEFDHADIYKDLDDVKKSFARLMDLLPENGTLLACAEDANVMELRKLTKCKNSFTYGFGAEADFRAK IMFQNANGLGFEVHHRGEIMGPYAMQITGEYNVLNATAVVAMSKMLGFSENRIQIALESFEGVKRRQEILGEPNGILVIE DFAHHPTAVRETVKGIQKKYPGRKVFSVFEPRSATSRRKVFQKDYVEAFKGSHEVLLAKAFDQTKIDEENRFSTHELVDD LKKTHVTAADFDTADDIVAALKSKAHKGDVILIMSNGGFDGIYTKLLKALE >Mature_450_residues ASMAGLLKDRGFKITGSDSNPYPPMSTQLESLGISIMKGYKAENLHPKPDFVIVGNVISASNEEAQELMKLGIPYTSLPK AMGEFIIENRESVVISGTHGKTTTTSMMAWVAENAGVKPGFLIGGIPKNFSQSFKNPEDNYFIIEGDEYDTAFFDKVPKF IHYRPKHVILTSVEFDHADIYKDLDDVKKSFARLMDLLPENGTLLACAEDANVMELRKLTKCKNSFTYGFGAEADFRAKI MFQNANGLGFEVHHRGEIMGPYAMQITGEYNVLNATAVVAMSKMLGFSENRIQIALESFEGVKRRQEILGEPNGILVIED FAHHPTAVRETVKGIQKKYPGRKVFSVFEPRSATSRRKVFQKDYVEAFKGSHEVLLAKAFDQTKIDEENRFSTHELVDDL KKTHVTAADFDTADDIVAALKSKAHKGDVILIMSNGGFDGIYTKLLKALE
Specific function: Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N-acetylmuramic acid [H]
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1790680, Length=451, Percent_Identity=37.4722838137472, Blast_Score=319, Evalue=3e-88, Organism=Escherichia coli, GI1786279, Length=386, Percent_Identity=30.5699481865285, Blast_Score=145, Evalue=5e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005757 - InterPro: IPR016040 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: 6.3.2.- [C]
Molecular weight: Translated: 50193; Mature: 50062
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASMAGLLKDRGFKITGSDSNPYPPMSTQLESLGISIMKGYKAENLHPKPDFVIVGNVIS CCCHHHHHHHCCEEEECCCCCCCCCHHHHHHHHCHHHHCCCCCCCCCCCCCEEEEECEEC ASNEEAQELMKLGIPYTSLPKAMGEFIIENRESVVISGTHGKTTTTSMMAWVAENAGVKP CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC GFLIGGIPKNFSQSFKNPEDNYFIIEGDEYDTAFFDKVPKFIHYRPKHVILTSVEFDHAD CEEECCCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHH IYKDLDDVKKSFARLMDLLPENGTLLACAEDANVMELRKLTKCKNSFTYGFGAEADFRAK HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEE IMFQNANGLGFEVHHRGEIMGPYAMQITGEYNVLNATAVVAMSKMLGFSENRIQIALESF EEEECCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHH EGVKRRQEILGEPNGILVIEDFAHHPTAVRETVKGIQKKYPGRKVFSVFEPRSATSRRKV HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH FQKDYVEAFKGSHEVLLAKAFDQTKIDEENRFSTHELVDDLKKTHVTAADFDTADDIVAA HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCEECCCCCHHHHHHH LKSKAHKGDVILIMSNGGFDGIYTKLLKALE HHHCCCCCCEEEEEECCCCHHHHHHHHHHCC >Mature Secondary Structure ASMAGLLKDRGFKITGSDSNPYPPMSTQLESLGISIMKGYKAENLHPKPDFVIVGNVIS CCHHHHHHHCCEEEECCCCCCCCCHHHHHHHHCHHHHCCCCCCCCCCCCCEEEEECEEC ASNEEAQELMKLGIPYTSLPKAMGEFIIENRESVVISGTHGKTTTTSMMAWVAENAGVKP CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC GFLIGGIPKNFSQSFKNPEDNYFIIEGDEYDTAFFDKVPKFIHYRPKHVILTSVEFDHAD CEEECCCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHH IYKDLDDVKKSFARLMDLLPENGTLLACAEDANVMELRKLTKCKNSFTYGFGAEADFRAK HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEE IMFQNANGLGFEVHHRGEIMGPYAMQITGEYNVLNATAVVAMSKMLGFSENRIQIALESF EEEECCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHH EGVKRRQEILGEPNGILVIEDFAHHPTAVRETVKGIQKKYPGRKVFSVFEPRSATSRRKV HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH FQKDYVEAFKGSHEVLLAKAFDQTKIDEENRFSTHELVDDLKKTHVTAADFDTADDIVAA HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCEECCCCCHHHHHHH LKSKAHKGDVILIMSNGGFDGIYTKLLKALE HHHCCCCCCEEEEEECCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 2843822; 7984428; 8808921 [H]