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The map label for this gene is ybbE [H]

Identifier: 42523428

GI number: 42523428

Start: 1863688

End: 1864749

Strand: Direct

Name: ybbE [H]

Synonym: Bd1951

Alternate gene names: 42523428

Gene position: 1863688-1864749 (Clockwise)

Preceding gene: 42523427

Following gene: 42523429

Centisome position: 49.27

GC content: 48.68

Gene sequence:

>1062_bases
ATGAAATTTTCTGTATTGGAAAAAAATCTGATCACTCAACTTGAAGACCGCATTCGTGACACCACTCCGGGTGTGATGGT
GCGTGCTTATCAGGGCGGCCGTATCATCTGTGATGTGGCGGTGGGTAACACTTATGCCTATTATGATCTGGCAAGTTTGA
CGAAAGTGATTTTCACGACTCAGGCCATGGTTCAGGCTTTTGAGGCGGGCAAGTGGAACTTTGAAACCAAAGTGGCGGAC
CTTCTGCCGTGGTTTGCGCACAAAGAAACCCGCATCACCGAGCTTTTGACCCACAGTTCAGGTCTGGCTTGGTGGTTGCC
GTTGTATCAGGAGATCAACACCTCTTTGCCGCGTGATAAACGCCGTGAACAGCTGCAAGGCATGCTGCAAAATCTGAAAA
TTGAAAAGCAAGACACGGCGGTTTATTCCGATGTGGGCTTTTTGGTTTTGGGCTTTATCATTGAAAAGATTTACGACAAA
TCTTTGGATGATGTTTGGACTGATATCAAAAACAAATTCTATCTGGGCACAACATTGGAGTTCCATCCGGATAACAAGGC
CGCTCACAAGGCTTCTTTGTATGCGCCGACCGAGGAATGCCCGGTTCGTCGCAAGCTGGTCCAGGGTGAAGTGCATGATC
TGAATGCGTGGGCGCTGGGTGGGGTTTCCACTCATGCGGGTCTGTTTGGCAGTATTGATGATGCAGGCTGGTTCTCGTTG
CACCTGCGTTCGCACTTGATGGGGATTGCCCGCTATTCCATCCGCCAGAAAACAGCTCAGCTGTTTGCCAAAAGAGCTTT
GCCGGAAGGCAAAGGGGACTGGGCCATGGGTTACATGATGCCAACGCCGGGTTCTGCAAGCTGCGGGACTTATTTCTCTT
TGGATTCTATTGGGCACACAGGCTTTACGGGAACTTCCGTTTGGTATGATCCAAAGATGGACTTGAGTGTGATCATTCTG
TCCAATCGGGTCCTGTACGGATCTGATAACAAAGCCTTTGGCAAATTGCGTCCGGAAATTCATAATTGGATTGTTGAAAA
CTACAGAAGAAGTGGACTTTAA

Upstream 100 bases:

>100_bases
ATGCTCCGGTGCAAAGACCTGTGCCCTTTAATACTCCCTGTGAACTGGTGATGGCGAATAACCGCACCGTTTTGACAATC
GATACCGGAGGACGTCCATA

Downstream 100 bases:

>100_bases
GATGAATATCAAACCAGGCAGTCACATTCACTTGATGGGTATTTGCGGGACGGCGATGGCCTCCATGGCAGGTCTTTTGA
AAGACCGTGGCTTTAAAATC

Product: D-alanyl-D-alanine carboxypeptidease, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MKFSVLEKNLITQLEDRIRDTTPGVMVRAYQGGRIICDVAVGNTYAYYDLASLTKVIFTTQAMVQAFEAGKWNFETKVAD
LLPWFAHKETRITELLTHSSGLAWWLPLYQEINTSLPRDKRREQLQGMLQNLKIEKQDTAVYSDVGFLVLGFIIEKIYDK
SLDDVWTDIKNKFYLGTTLEFHPDNKAAHKASLYAPTEECPVRRKLVQGEVHDLNAWALGGVSTHAGLFGSIDDAGWFSL
HLRSHLMGIARYSIRQKTAQLFAKRALPEGKGDWAMGYMMPTPGSASCGTYFSLDSIGHTGFTGTSVWYDPKMDLSVIIL
SNRVLYGSDNKAFGKLRPEIHNWIVENYRRSGL

Sequences:

>Translated_353_residues
MKFSVLEKNLITQLEDRIRDTTPGVMVRAYQGGRIICDVAVGNTYAYYDLASLTKVIFTTQAMVQAFEAGKWNFETKVAD
LLPWFAHKETRITELLTHSSGLAWWLPLYQEINTSLPRDKRREQLQGMLQNLKIEKQDTAVYSDVGFLVLGFIIEKIYDK
SLDDVWTDIKNKFYLGTTLEFHPDNKAAHKASLYAPTEECPVRRKLVQGEVHDLNAWALGGVSTHAGLFGSIDDAGWFSL
HLRSHLMGIARYSIRQKTAQLFAKRALPEGKGDWAMGYMMPTPGSASCGTYFSLDSIGHTGFTGTSVWYDPKMDLSVIIL
SNRVLYGSDNKAFGKLRPEIHNWIVENYRRSGL
>Mature_353_residues
MKFSVLEKNLITQLEDRIRDTTPGVMVRAYQGGRIICDVAVGNTYAYYDLASLTKVIFTTQAMVQAFEAGKWNFETKVAD
LLPWFAHKETRITELLTHSSGLAWWLPLYQEINTSLPRDKRREQLQGMLQNLKIEKQDTAVYSDVGFLVLGFIIEKIYDK
SLDDVWTDIKNKFYLGTTLEFHPDNKAAHKASLYAPTEECPVRRKLVQGEVHDLNAWALGGVSTHAGLFGSIDDAGWFSL
HLRSHLMGIARYSIRQKTAQLFAKRALPEGKGDWAMGYMMPTPGSASCGTYFSLDSIGHTGFTGTSVWYDPKMDLSVIIL
SNRVLYGSDNKAFGKLRPEIHNWIVENYRRSGL

Specific function: Unknown

COG id: COG1680

COG function: function code V; Beta-lactamase class C and other penicillin binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0214 family [H]

Homologues:

Organism=Escherichia coli, GI87082101, Length=329, Percent_Identity=28.8753799392097, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR001466
- InterPro:   IPR022849 [H]

Pfam domain/function: PF00144 Beta-lactamase [H]

EC number: NA

Molecular weight: Translated: 39933; Mature: 39933

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFSVLEKNLITQLEDRIRDTTPGVMVRAYQGGRIICDVAVGNTYAYYDLASLTKVIFTT
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEECCEEEEHHHHHHHHHHHHH
QAMVQAFEAGKWNFETKVADLLPWFAHKETRITELLTHSSGLAWWLPLYQEINTSLPRDK
HHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCHH
RREQLQGMLQNLKIEKQDTAVYSDVGFLVLGFIIEKIYDKSLDDVWTDIKNKFYLGTTLE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEEEE
FHPDNKAAHKASLYAPTEECPVRRKLVQGEVHDLNAWALGGVSTHAGLFGSIDDAGWFSL
ECCCCCCHHHCEECCCCHHCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHH
HLRSHLMGIARYSIRQKTAQLFAKRALPEGKGDWAMGYMMPTPGSASCGTYFSLDSIGHT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEECCCCCCC
GFTGTSVWYDPKMDLSVIILSNRVLYGSDNKAFGKLRPEIHNWIVENYRRSGL
CCCCCEEEECCCCCEEEEEEECEEEECCCCCCHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKFSVLEKNLITQLEDRIRDTTPGVMVRAYQGGRIICDVAVGNTYAYYDLASLTKVIFTT
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEECCEEEEHHHHHHHHHHHHH
QAMVQAFEAGKWNFETKVADLLPWFAHKETRITELLTHSSGLAWWLPLYQEINTSLPRDK
HHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCHH
RREQLQGMLQNLKIEKQDTAVYSDVGFLVLGFIIEKIYDKSLDDVWTDIKNKFYLGTTLE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEEEE
FHPDNKAAHKASLYAPTEECPVRRKLVQGEVHDLNAWALGGVSTHAGLFGSIDDAGWFSL
ECCCCCCHHHCEECCCCHHCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHH
HLRSHLMGIARYSIRQKTAQLFAKRALPEGKGDWAMGYMMPTPGSASCGTYFSLDSIGHT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEECCCCCCC
GFTGTSVWYDPKMDLSVIILSNRVLYGSDNKAFGKLRPEIHNWIVENYRRSGL
CCCCCEEEECCCCCEEEEEEECEEEECCCCCCHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377 [H]