| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42523326
Identifier: 42523326
GI number: 42523326
Start: 1769031
End: 1771721
Strand: Direct
Name: 42523326
Synonym: Bd1841
Alternate gene names: NA
Gene position: 1769031-1771721 (Clockwise)
Preceding gene: 42523321
Following gene: 42523327
Centisome position: 46.76
GC content: 51.39
Gene sequence:
>2691_bases ATGGCATTTAATAAAAACATCCTGGTTGTGGGGGCATTGCTTTCTTCGACACTTCTTTCCGCCTGCACCCAGTTTGAGGC TAAGCCTCTGGATAAAATCATCCAGGCGAAACAGGCACCGGCAAACTCCCTGAGTTCTTTCAGCACTCCCGCCGAAATTC CTGCAAATGCCGCTTGTAAGCAGGCGTCCTGCATTACCATTCAAAAGGCTTCTTTGGGGAAGATCTTCCTGCTGATGGCT TCGGGTATCACGTCCGGGATGACGCCGCAGTGGTATGATCTGAAACCTCTGGTGGTGAGCTTTGAAAAATCCGGCAACCG CCTGGCTTTGATCGGTGAAAATTACAACAGCATCTATTCTGAAATCCGCACCGTGAATCTGATCCAGAGTTTCGAAGTGA TTTCTGAAGACGCAACGTCCATCACGTTTGACTGGGGACAGGGTCTAAAAAGTTTTGTCCTTCAGCGTTCCTATGATGTT GATGCACCTCGTGGCAATGTGGATTTGACCGACAGCTCTTTGGCCTCCATTCCGGTGATTGATTCTTTTGTGACCGGAAT CAAGTTTGATGAAAAAAACATTGAACTGAATCAGCTTTCAAAAATCCGCAGTGATGTGGTGAAGGCGGGTTCTGACAAGT CCCTGAATCATGAGCCGCGGGAAGAGACGCTGAACATGAACATTCAGATCCGTGCGTATGATCTGTCTAAGAACTTCAAG GCCAAAGAATACGACAGCTCCCGCCGTGTGGGTTTCTTCGTCACGAAGTATCGTAAGCTTGGCTACAGCAAGGAAATGAC GAATCTGATCACCAAGTGGGATATTTCCCCAGAAAAGGGCCCAATCAAGGTGCGGGTTTCCGAGGCTGTTCCAGAGGACT ATCTGGCGGCGGTGACCGAAGGGGCTCTTTATTGGAATAAAGTCTTTGGCCGTGATGTGATCCAAGTTGTGACCGGTGTT TCTGTGGATGCCAAACCTGAAGATCGCAGTATCATCGTGCGCTGGATCCCGTGGCTGGACTCCGGGGCGGCTTACGCCAT CGGTCAGTCCGATCCGTTGACGGGCGAACTTTTGCGCGCTCAGGTGTTCATGCCGTCCGTATTCACGTCTGTCGGTTCTG CGGATCTGGTAAAACTTAACGGGGATGTTCCTGTCGTCGCTGCAGGTGCGATTGCCTGTGACCTCACCGAGTCTTTGCTG GCTCTGAACAAGATCGCCCGCGAGGCCGGCGACTCTCAACGTCTTAGACTGGCTCAGGACAGCGTGCGTGCCACTGTGGC GCATGAGTTGGGGCATGCCTTGGGTATGCGCCACAACTTTGCAGGGTCCTCTTCTGCGAAGGTTTCAACTCAGGAAATTT ACGATTCTGCTAAAACGTACTTGCGTGATCCAAATCATCAGGGGCTGGAAACTTCCACCAGTATCATGGATTATGTCAGC GGTATCGATGACATTCTGATGTCCGGTCGTATTAAATATTCTGCGCTTTCCTATGACAAGATGGCGATGGACTGGGCTTA TTCCGAAAACGACACGGCTTTGGATGAAAAAATCAGCCGCTACTGCACGGATGATGATATCGCTGTGGCGAATTCTCAAG GGTTGCAGATCTATGGTTGTGAGCGTTTTGATGCGGGCAACAACCCCTTGCTGCGCAAATACCTGGATGCGGTGGATGAA CGTGATGACCTGGTGAAGGTTCTGTTTGCCTCCATCATTGGTCGTTTGTACCCAGCCGATCAGCCGGGTGTGGTTCGCAA TCTGGATGCGGTTTTGGCGGACACAGTCAAATGGGGCCGTGCGAATATTGATCTGACTTTTGTTTCCCAGGTTCTGTTTG ACAGCACCAAGAATGGACAGCCGGCAGCAAGCTTTGCATCTTTGACGGCGGTAAAAACCGGCAAGATCATGTATGCGCGT CTGGGACTGGATGAGCAGTTGATGAAAGAACGTGCCGCCTCCTTGAAGGAAGTCGGCGGTTATGCGGCTTTGTTGAACGG TTTGATGCGCGATAGTAAAGGCAACATCAACACGAAGTGGCTGGATCAACAGATTGAAGAGCTGAAAGCGGCTCCGTACC TGGCTCAAGGTAAAACTTTGGGTGGTCGTGAGTATGTTCTGACGGAAGCTCAGCAAAGAAAGATCCTGAAGTTCATGGAC AGCATCCGTCCGGTGAATGACAAGGTTTTGCTGGCTGGTGGTGCGACCTTGTTACCGAAACTGAACGAAGCCGTGGAAGA GGCCAATGGTGCTAAAGCCATCGTGACGTCCTTGCTGGGTCAGAATTTGTTGGATGAATCCGAAGCAGAGTCCCTGACGG CCTTGTATCTGGATCTGGCTCAGGCGGCGACGGGGACTGTGGTTGTGAAAGTGGGCCCGGGTCTTACCAAAGAAGTGACA TTGCCATACTCCTGGTTGAAGGCGGATGAAAAGGCTTACTTCGGGAAGCTGTTGTCTTCTCAAGGTCTGCGCTTTGATAT GACTTTGCGTGTGGCGAAGGCCCGCTCTGAACAGCTGAAAAAAATCGCCGGCTTGTTGGCTGAGATTGATCCCTCTTTGG ATCCGGTGACCGAGCCCAATCTGACCACGTTGCCTCAGCGTCTTTTGACGGGCGGTTTGGTGGATGCGGCAGCGGCGGCT TGGTTGAAAGCTGAGATCGAAGTTCTGGCGGCTTTAAGCAAGATACAATAG
Upstream 100 bases:
>100_bases CATTGCAATTATCTTTTTTTCAGAACTCTTTTGATCTTCGCAAGACTTTGGCATAAATGCACTGAAATTACTGCAGCTGA AATCACAGAGGGGACCATTC
Downstream 100 bases:
>100_bases TAGTTATAGAGAGAGTGAGTTTGATGAAAAGGCCGGCTTTGTACCGGCCTTTTTTATTTGTCTCAAAGCGAGACGGGCAT CGGGGACTGTCGAAAGTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 896; Mature: 895
Protein sequence:
>896_residues MAFNKNILVVGALLSSTLLSACTQFEAKPLDKIIQAKQAPANSLSSFSTPAEIPANAACKQASCITIQKASLGKIFLLMA SGITSGMTPQWYDLKPLVVSFEKSGNRLALIGENYNSIYSEIRTVNLIQSFEVISEDATSITFDWGQGLKSFVLQRSYDV DAPRGNVDLTDSSLASIPVIDSFVTGIKFDEKNIELNQLSKIRSDVVKAGSDKSLNHEPREETLNMNIQIRAYDLSKNFK AKEYDSSRRVGFFVTKYRKLGYSKEMTNLITKWDISPEKGPIKVRVSEAVPEDYLAAVTEGALYWNKVFGRDVIQVVTGV SVDAKPEDRSIIVRWIPWLDSGAAYAIGQSDPLTGELLRAQVFMPSVFTSVGSADLVKLNGDVPVVAAGAIACDLTESLL ALNKIAREAGDSQRLRLAQDSVRATVAHELGHALGMRHNFAGSSSAKVSTQEIYDSAKTYLRDPNHQGLETSTSIMDYVS GIDDILMSGRIKYSALSYDKMAMDWAYSENDTALDEKISRYCTDDDIAVANSQGLQIYGCERFDAGNNPLLRKYLDAVDE RDDLVKVLFASIIGRLYPADQPGVVRNLDAVLADTVKWGRANIDLTFVSQVLFDSTKNGQPAASFASLTAVKTGKIMYAR LGLDEQLMKERAASLKEVGGYAALLNGLMRDSKGNINTKWLDQQIEELKAAPYLAQGKTLGGREYVLTEAQQRKILKFMD SIRPVNDKVLLAGGATLLPKLNEAVEEANGAKAIVTSLLGQNLLDESEAESLTALYLDLAQAATGTVVVKVGPGLTKEVT LPYSWLKADEKAYFGKLLSSQGLRFDMTLRVAKARSEQLKKIAGLLAEIDPSLDPVTEPNLTTLPQRLLTGGLVDAAAAA WLKAEIEVLAALSKIQ
Sequences:
>Translated_896_residues MAFNKNILVVGALLSSTLLSACTQFEAKPLDKIIQAKQAPANSLSSFSTPAEIPANAACKQASCITIQKASLGKIFLLMA SGITSGMTPQWYDLKPLVVSFEKSGNRLALIGENYNSIYSEIRTVNLIQSFEVISEDATSITFDWGQGLKSFVLQRSYDV DAPRGNVDLTDSSLASIPVIDSFVTGIKFDEKNIELNQLSKIRSDVVKAGSDKSLNHEPREETLNMNIQIRAYDLSKNFK AKEYDSSRRVGFFVTKYRKLGYSKEMTNLITKWDISPEKGPIKVRVSEAVPEDYLAAVTEGALYWNKVFGRDVIQVVTGV SVDAKPEDRSIIVRWIPWLDSGAAYAIGQSDPLTGELLRAQVFMPSVFTSVGSADLVKLNGDVPVVAAGAIACDLTESLL ALNKIAREAGDSQRLRLAQDSVRATVAHELGHALGMRHNFAGSSSAKVSTQEIYDSAKTYLRDPNHQGLETSTSIMDYVS GIDDILMSGRIKYSALSYDKMAMDWAYSENDTALDEKISRYCTDDDIAVANSQGLQIYGCERFDAGNNPLLRKYLDAVDE RDDLVKVLFASIIGRLYPADQPGVVRNLDAVLADTVKWGRANIDLTFVSQVLFDSTKNGQPAASFASLTAVKTGKIMYAR LGLDEQLMKERAASLKEVGGYAALLNGLMRDSKGNINTKWLDQQIEELKAAPYLAQGKTLGGREYVLTEAQQRKILKFMD SIRPVNDKVLLAGGATLLPKLNEAVEEANGAKAIVTSLLGQNLLDESEAESLTALYLDLAQAATGTVVVKVGPGLTKEVT LPYSWLKADEKAYFGKLLSSQGLRFDMTLRVAKARSEQLKKIAGLLAEIDPSLDPVTEPNLTTLPQRLLTGGLVDAAAAA WLKAEIEVLAALSKIQ >Mature_895_residues AFNKNILVVGALLSSTLLSACTQFEAKPLDKIIQAKQAPANSLSSFSTPAEIPANAACKQASCITIQKASLGKIFLLMAS GITSGMTPQWYDLKPLVVSFEKSGNRLALIGENYNSIYSEIRTVNLIQSFEVISEDATSITFDWGQGLKSFVLQRSYDVD APRGNVDLTDSSLASIPVIDSFVTGIKFDEKNIELNQLSKIRSDVVKAGSDKSLNHEPREETLNMNIQIRAYDLSKNFKA KEYDSSRRVGFFVTKYRKLGYSKEMTNLITKWDISPEKGPIKVRVSEAVPEDYLAAVTEGALYWNKVFGRDVIQVVTGVS VDAKPEDRSIIVRWIPWLDSGAAYAIGQSDPLTGELLRAQVFMPSVFTSVGSADLVKLNGDVPVVAAGAIACDLTESLLA LNKIAREAGDSQRLRLAQDSVRATVAHELGHALGMRHNFAGSSSAKVSTQEIYDSAKTYLRDPNHQGLETSTSIMDYVSG IDDILMSGRIKYSALSYDKMAMDWAYSENDTALDEKISRYCTDDDIAVANSQGLQIYGCERFDAGNNPLLRKYLDAVDER DDLVKVLFASIIGRLYPADQPGVVRNLDAVLADTVKWGRANIDLTFVSQVLFDSTKNGQPAASFASLTAVKTGKIMYARL GLDEQLMKERAASLKEVGGYAALLNGLMRDSKGNINTKWLDQQIEELKAAPYLAQGKTLGGREYVLTEAQQRKILKFMDS IRPVNDKVLLAGGATLLPKLNEAVEEANGAKAIVTSLLGQNLLDESEAESLTALYLDLAQAATGTVVVKVGPGLTKEVTL PYSWLKADEKAYFGKLLSSQGLRFDMTLRVAKARSEQLKKIAGLLAEIDPSLDPVTEPNLTTLPQRLLTGGLVDAAAAAW LKAEIEVLAALSKIQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 97649; Mature: 97518
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFNKNILVVGALLSSTLLSACTQFEAKPLDKIIQAKQAPANSLSSFSTPAEIPANAACK CCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHC QASCITIQKASLGKIFLLMASGITSGMTPQWYDLKPLVVSFEKSGNRLALIGENYNSIYS CCCEEEEECCCCCCEEEEEHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCHHHHHH EIRTVNLIQSFEVISEDATSITFDWGQGLKSFVLQRSYDVDAPRGNVDLTDSSLASIPVI HHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH DSFVTGIKFDEKNIELNQLSKIRSDVVKAGSDKSLNHEPREETLNMNIQIRAYDLSKNFK HHHHHCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCEEEEEEEEECCCCCC AKEYDSSRRVGFFVTKYRKLGYSKEMTNLITKWDISPEKGPIKVRVSEAVPEDYLAAVTE CCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHH GALYWNKVFGRDVIQVVTGVSVDAKPEDRSIIVRWIPWLDSGAAYAIGQSDPLTGELLRA CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCHHHHHHH QVFMPSVFTSVGSADLVKLNGDVPVVAAGAIACDLTESLLALNKIAREAGDSQRLRLAQD HHHHHHHHHHCCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH SVRATVAHELGHALGMRHNFAGSSSAKVSTQEIYDSAKTYLRDPNHQGLETSTSIMDYVS HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH GIDDILMSGRIKYSALSYDKMAMDWAYSENDTALDEKISRYCTDDDIAVANSQGLQIYGC HHHHHHHCCCEEEEEECCHHHHEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEEEC ERFDAGNNPLLRKYLDAVDERDDLVKVLFASIIGRLYPADQPGVVRNLDAVLADTVKWGR CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC ANIDLTFVSQVLFDSTKNGQPAASFASLTAVKTGKIMYARLGLDEQLMKERAASLKEVGG CCEEHHHHHHHHHCCCCCCCCHHHHHHHHHEECCCEEEEECCCCHHHHHHHHHHHHHHCH YAALLNGLMRDSKGNINTKWLDQQIEELKAAPYLAQGKTLGGREYVLTEAQQRKILKFMD HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHH SIRPVNDKVLLAGGATLLPKLNEAVEEANGAKAIVTSLLGQNLLDESEAESLTALYLDLA HCCCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH QAATGTVVVKVGPGLTKEVTLPYSWLKADEKAYFGKLLSSQGLRFDMTLRVAKARSEQLK HCCCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH KIAGLLAEIDPSLDPVTEPNLTTLPQRLLTGGLVDAAAAAWLKAEIEVLAALSKIQ HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AFNKNILVVGALLSSTLLSACTQFEAKPLDKIIQAKQAPANSLSSFSTPAEIPANAACK CCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHC QASCITIQKASLGKIFLLMASGITSGMTPQWYDLKPLVVSFEKSGNRLALIGENYNSIYS CCCEEEEECCCCCCEEEEEHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCHHHHHH EIRTVNLIQSFEVISEDATSITFDWGQGLKSFVLQRSYDVDAPRGNVDLTDSSLASIPVI HHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH DSFVTGIKFDEKNIELNQLSKIRSDVVKAGSDKSLNHEPREETLNMNIQIRAYDLSKNFK HHHHHCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCEEEEEEEEECCCCCC AKEYDSSRRVGFFVTKYRKLGYSKEMTNLITKWDISPEKGPIKVRVSEAVPEDYLAAVTE CCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHH GALYWNKVFGRDVIQVVTGVSVDAKPEDRSIIVRWIPWLDSGAAYAIGQSDPLTGELLRA CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCHHHHHHH QVFMPSVFTSVGSADLVKLNGDVPVVAAGAIACDLTESLLALNKIAREAGDSQRLRLAQD HHHHHHHHHHCCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH SVRATVAHELGHALGMRHNFAGSSSAKVSTQEIYDSAKTYLRDPNHQGLETSTSIMDYVS HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH GIDDILMSGRIKYSALSYDKMAMDWAYSENDTALDEKISRYCTDDDIAVANSQGLQIYGC HHHHHHHCCCEEEEEECCHHHHEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEEEC ERFDAGNNPLLRKYLDAVDERDDLVKVLFASIIGRLYPADQPGVVRNLDAVLADTVKWGR CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC ANIDLTFVSQVLFDSTKNGQPAASFASLTAVKTGKIMYARLGLDEQLMKERAASLKEVGG CCEEHHHHHHHHHCCCCCCCCHHHHHHHHHEECCCEEEEECCCCHHHHHHHHHHHHHHCH YAALLNGLMRDSKGNINTKWLDQQIEELKAAPYLAQGKTLGGREYVLTEAQQRKILKFMD HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHH SIRPVNDKVLLAGGATLLPKLNEAVEEANGAKAIVTSLLGQNLLDESEAESLTALYLDLA HCCCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH QAATGTVVVKVGPGLTKEVTLPYSWLKADEKAYFGKLLSSQGLRFDMTLRVAKARSEQLK HCCCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH KIAGLLAEIDPSLDPVTEPNLTTLPQRLLTGGLVDAAAAAWLKAEIEVLAALSKIQ HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA