Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

Click here to switch to the map view.

The map label for this gene is 42523300

Identifier: 42523300

GI number: 42523300

Start: 1741844

End: 1742695

Strand: Direct

Name: 42523300

Synonym: Bd1814

Alternate gene names: NA

Gene position: 1741844-1742695 (Clockwise)

Preceding gene: 42523295

Following gene: 42523301

Centisome position: 46.04

GC content: 49.77

Gene sequence:

>852_bases
ATGTCCGATACTACCAGAACCCCTCAGCTTGTATTTCCATGGAACGGAGTCCTTCCCGATGCGGACGCAATCACCTTGCG
TGATATTGATATTGTGGGGGTGGGATCTTTCCGGCGGCATCAGCTTGAGATTCTGTCGAAGAGCAAAAGTCTGATCGTTC
AGACCCATGGAATGCAGATTCCGGAGCAGGTCAGCGCGATTTATCAGGCAGAGCTTTTGCGCACCCTGGAGTGGCTTCGC
CCCTTTCGCGTTGAAGAAGGGGAGCGTTTGAATCTGCGCGCCGAACAAGAGCGCCTGTTTGAAAGTCTTTTTCCGCGCAC
CCGTGAACATCTGGGCATGGCCGTGAATCGTCTGCGTGATGAGTATCTGGAAAACATGGAATGGAGCAGCTGGCTGCTGC
AGGATCACTGGCGTTATTTTGTCGGGTATCTGCGCCAGAAGTTTCCGGGTCAGGCGGATATTCTGGAGCTTGCGCACTGG
GAATGGGTGCAGGCGTGGATTGAAGTTCAGCCCTTTGATGGTGAAAGTGCGGAAGAGCCGGGTGTGCTTTCTTTGAACCC
CAGTCTGCAAGTGGTGATTCTTTCCCGAGACAATCTCGTCTTGAATCGAGACAAAGGTATGTATGCTTTTGTTTATAGTG
GTACGAAGAATACTGTGGTGGAAAGACCACTGGACGTGGTGGATTCGCTATTCATCGACTTGTTACAGGAAGATAGAAAG
TATTCAAAAAAGCAACTGCTTGAAATGGCCGCTATCAGCTTAAAAGCCACACCCCAACCATCATCCGAGACACTGGAAAA
AAAGTTTTTATCGCTGCTTAGTGACGATATAATCAAAGACGTTCCGACATAA

Upstream 100 bases:

>100_bases
CCAGAGAAATCAGCAATTTATGGCTGTCTCCAGAGTAATGCTCGGGATTTATAGGTCTCAAGCTTGCCCCCTCCAGACAC
CACCCGTAGGATGGGATGAA

Downstream 100 bases:

>100_bases
CCTCAAACAAGGAGTGTTGAATGAGTAAAAAGATTCTGGCTTTGGCCGTTTTCATGGCAGGCAGTGTGCTTTCTTTGCAG
TCGCAGGCCGCGACATCCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSDTTRTPQLVFPWNGVLPDADAITLRDIDIVGVGSFRRHQLEILSKSKSLIVQTHGMQIPEQVSAIYQAELLRTLEWLR
PFRVEEGERLNLRAEQERLFESLFPRTREHLGMAVNRLRDEYLENMEWSSWLLQDHWRYFVGYLRQKFPGQADILELAHW
EWVQAWIEVQPFDGESAEEPGVLSLNPSLQVVILSRDNLVLNRDKGMYAFVYSGTKNTVVERPLDVVDSLFIDLLQEDRK
YSKKQLLEMAAISLKATPQPSSETLEKKFLSLLSDDIIKDVPT

Sequences:

>Translated_283_residues
MSDTTRTPQLVFPWNGVLPDADAITLRDIDIVGVGSFRRHQLEILSKSKSLIVQTHGMQIPEQVSAIYQAELLRTLEWLR
PFRVEEGERLNLRAEQERLFESLFPRTREHLGMAVNRLRDEYLENMEWSSWLLQDHWRYFVGYLRQKFPGQADILELAHW
EWVQAWIEVQPFDGESAEEPGVLSLNPSLQVVILSRDNLVLNRDKGMYAFVYSGTKNTVVERPLDVVDSLFIDLLQEDRK
YSKKQLLEMAAISLKATPQPSSETLEKKFLSLLSDDIIKDVPT
>Mature_282_residues
SDTTRTPQLVFPWNGVLPDADAITLRDIDIVGVGSFRRHQLEILSKSKSLIVQTHGMQIPEQVSAIYQAELLRTLEWLRP
FRVEEGERLNLRAEQERLFESLFPRTREHLGMAVNRLRDEYLENMEWSSWLLQDHWRYFVGYLRQKFPGQADILELAHWE
WVQAWIEVQPFDGESAEEPGVLSLNPSLQVVILSRDNLVLNRDKGMYAFVYSGTKNTVVERPLDVVDSLFIDLLQEDRKY
SKKQLLEMAAISLKATPQPSSETLEKKFLSLLSDDIIKDVPT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32827; Mature: 32696

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTTRTPQLVFPWNGVLPDADAITLRDIDIVGVGSFRRHQLEILSKSKSLIVQTHGMQI
CCCCCCCCEEEECCCCCCCCCCEEEEECEEEEECCCHHHHHHHHHHCCCCEEEEECCCCC
PEQVSAIYQAELLRTLEWLRPFRVEEGERLNLRAEQERLFESLFPRTREHLGMAVNRLRD
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYLENMEWSSWLLQDHWRYFVGYLRQKFPGQADILELAHWEWVQAWIEVQPFDGESAEEP
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCC
GVLSLNPSLQVVILSRDNLVLNRDKGMYAFVYSGTKNTVVERPLDVVDSLFIDLLQEDRK
CEEEECCCEEEEEEECCCEEEECCCCEEEEEEECCCCCHHHCHHHHHHHHHHHHHHHHHH
YSKKQLLEMAAISLKATPQPSSETLEKKFLSLLSDDIIKDVPT
HHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SDTTRTPQLVFPWNGVLPDADAITLRDIDIVGVGSFRRHQLEILSKSKSLIVQTHGMQI
CCCCCCCEEEECCCCCCCCCCEEEEECEEEEECCCHHHHHHHHHHCCCCEEEEECCCCC
PEQVSAIYQAELLRTLEWLRPFRVEEGERLNLRAEQERLFESLFPRTREHLGMAVNRLRD
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYLENMEWSSWLLQDHWRYFVGYLRQKFPGQADILELAHWEWVQAWIEVQPFDGESAEEP
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCC
GVLSLNPSLQVVILSRDNLVLNRDKGMYAFVYSGTKNTVVERPLDVVDSLFIDLLQEDRK
CEEEECCCEEEEEEECCCEEEECCCCEEEEEEECCCCCHHHCHHHHHHHHHHHHHHHHHH
YSKKQLLEMAAISLKATPQPSSETLEKKFLSLLSDDIIKDVPT
HHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA