| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42523300
Identifier: 42523300
GI number: 42523300
Start: 1741844
End: 1742695
Strand: Direct
Name: 42523300
Synonym: Bd1814
Alternate gene names: NA
Gene position: 1741844-1742695 (Clockwise)
Preceding gene: 42523295
Following gene: 42523301
Centisome position: 46.04
GC content: 49.77
Gene sequence:
>852_bases ATGTCCGATACTACCAGAACCCCTCAGCTTGTATTTCCATGGAACGGAGTCCTTCCCGATGCGGACGCAATCACCTTGCG TGATATTGATATTGTGGGGGTGGGATCTTTCCGGCGGCATCAGCTTGAGATTCTGTCGAAGAGCAAAAGTCTGATCGTTC AGACCCATGGAATGCAGATTCCGGAGCAGGTCAGCGCGATTTATCAGGCAGAGCTTTTGCGCACCCTGGAGTGGCTTCGC CCCTTTCGCGTTGAAGAAGGGGAGCGTTTGAATCTGCGCGCCGAACAAGAGCGCCTGTTTGAAAGTCTTTTTCCGCGCAC CCGTGAACATCTGGGCATGGCCGTGAATCGTCTGCGTGATGAGTATCTGGAAAACATGGAATGGAGCAGCTGGCTGCTGC AGGATCACTGGCGTTATTTTGTCGGGTATCTGCGCCAGAAGTTTCCGGGTCAGGCGGATATTCTGGAGCTTGCGCACTGG GAATGGGTGCAGGCGTGGATTGAAGTTCAGCCCTTTGATGGTGAAAGTGCGGAAGAGCCGGGTGTGCTTTCTTTGAACCC CAGTCTGCAAGTGGTGATTCTTTCCCGAGACAATCTCGTCTTGAATCGAGACAAAGGTATGTATGCTTTTGTTTATAGTG GTACGAAGAATACTGTGGTGGAAAGACCACTGGACGTGGTGGATTCGCTATTCATCGACTTGTTACAGGAAGATAGAAAG TATTCAAAAAAGCAACTGCTTGAAATGGCCGCTATCAGCTTAAAAGCCACACCCCAACCATCATCCGAGACACTGGAAAA AAAGTTTTTATCGCTGCTTAGTGACGATATAATCAAAGACGTTCCGACATAA
Upstream 100 bases:
>100_bases CCAGAGAAATCAGCAATTTATGGCTGTCTCCAGAGTAATGCTCGGGATTTATAGGTCTCAAGCTTGCCCCCTCCAGACAC CACCCGTAGGATGGGATGAA
Downstream 100 bases:
>100_bases CCTCAAACAAGGAGTGTTGAATGAGTAAAAAGATTCTGGCTTTGGCCGTTTTCATGGCAGGCAGTGTGCTTTCTTTGCAG TCGCAGGCCGCGACATCCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 283; Mature: 282
Protein sequence:
>283_residues MSDTTRTPQLVFPWNGVLPDADAITLRDIDIVGVGSFRRHQLEILSKSKSLIVQTHGMQIPEQVSAIYQAELLRTLEWLR PFRVEEGERLNLRAEQERLFESLFPRTREHLGMAVNRLRDEYLENMEWSSWLLQDHWRYFVGYLRQKFPGQADILELAHW EWVQAWIEVQPFDGESAEEPGVLSLNPSLQVVILSRDNLVLNRDKGMYAFVYSGTKNTVVERPLDVVDSLFIDLLQEDRK YSKKQLLEMAAISLKATPQPSSETLEKKFLSLLSDDIIKDVPT
Sequences:
>Translated_283_residues MSDTTRTPQLVFPWNGVLPDADAITLRDIDIVGVGSFRRHQLEILSKSKSLIVQTHGMQIPEQVSAIYQAELLRTLEWLR PFRVEEGERLNLRAEQERLFESLFPRTREHLGMAVNRLRDEYLENMEWSSWLLQDHWRYFVGYLRQKFPGQADILELAHW EWVQAWIEVQPFDGESAEEPGVLSLNPSLQVVILSRDNLVLNRDKGMYAFVYSGTKNTVVERPLDVVDSLFIDLLQEDRK YSKKQLLEMAAISLKATPQPSSETLEKKFLSLLSDDIIKDVPT >Mature_282_residues SDTTRTPQLVFPWNGVLPDADAITLRDIDIVGVGSFRRHQLEILSKSKSLIVQTHGMQIPEQVSAIYQAELLRTLEWLRP FRVEEGERLNLRAEQERLFESLFPRTREHLGMAVNRLRDEYLENMEWSSWLLQDHWRYFVGYLRQKFPGQADILELAHWE WVQAWIEVQPFDGESAEEPGVLSLNPSLQVVILSRDNLVLNRDKGMYAFVYSGTKNTVVERPLDVVDSLFIDLLQEDRKY SKKQLLEMAAISLKATPQPSSETLEKKFLSLLSDDIIKDVPT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32827; Mature: 32696
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTTRTPQLVFPWNGVLPDADAITLRDIDIVGVGSFRRHQLEILSKSKSLIVQTHGMQI CCCCCCCCEEEECCCCCCCCCCEEEEECEEEEECCCHHHHHHHHHHCCCCEEEEECCCCC PEQVSAIYQAELLRTLEWLRPFRVEEGERLNLRAEQERLFESLFPRTREHLGMAVNRLRD HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EYLENMEWSSWLLQDHWRYFVGYLRQKFPGQADILELAHWEWVQAWIEVQPFDGESAEEP HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCC GVLSLNPSLQVVILSRDNLVLNRDKGMYAFVYSGTKNTVVERPLDVVDSLFIDLLQEDRK CEEEECCCEEEEEEECCCEEEECCCCEEEEEEECCCCCHHHCHHHHHHHHHHHHHHHHHH YSKKQLLEMAAISLKATPQPSSETLEKKFLSLLSDDIIKDVPT HHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SDTTRTPQLVFPWNGVLPDADAITLRDIDIVGVGSFRRHQLEILSKSKSLIVQTHGMQI CCCCCCCEEEECCCCCCCCCCEEEEECEEEEECCCHHHHHHHHHHCCCCEEEEECCCCC PEQVSAIYQAELLRTLEWLRPFRVEEGERLNLRAEQERLFESLFPRTREHLGMAVNRLRD HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EYLENMEWSSWLLQDHWRYFVGYLRQKFPGQADILELAHWEWVQAWIEVQPFDGESAEEP HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCC GVLSLNPSLQVVILSRDNLVLNRDKGMYAFVYSGTKNTVVERPLDVVDSLFIDLLQEDRK CEEEECCCEEEEEEECCCEEEECCCCEEEEEEECCCCCHHHCHHHHHHHHHHHHHHHHHH YSKKQLLEMAAISLKATPQPSSETLEKKFLSLLSDDIIKDVPT HHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA