| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42523291
Identifier: 42523291
GI number: 42523291
Start: 1731747
End: 1732886
Strand: Direct
Name: 42523291
Synonym: Bd1804
Alternate gene names: NA
Gene position: 1731747-1732886 (Clockwise)
Preceding gene: 42523289
Following gene: 42523292
Centisome position: 45.78
GC content: 52.81
Gene sequence:
>1140_bases ATGAAGCTTTGCTGCCTGATTATTCTTTCTTTGACTGCGCTGGGGCTTTCCTCCTGTTTCTGGAAGAAAGAAGACGGGCC CGTTGTGGAAGAAAAAGTCGTCAAAGTGCTCACTCCGAAGGCAGAAGATTCCGCCCCTAGAGATAAAAGTCTGGATGTGC TGGTGCGCTATCTGGCTGAAGCCGACGGTATTCATCGTGAGGCGTGGTGGGTTTTGACCGCAGCACGTCCCCCGATCAGC AAATCACCCTTTGGGAAAGTTCAAAGAGCATTGTTGGCCTCACAAAACATCAAACTGACCAACAAGTCGATGTTCCGCTG TGATCGTTATCTCGTGAAACGCGACGTGCTGGGGCTTTTGGGATACCCGCAAAAAGGCGAGGTCTTTGAAAAGTGCAGCG ATAAAGCCGACGCCAAGCGCATTGCCAGTTTTGATGTTCCGAAAGAGGGCGAGCTGAATCTGATTTTTTACCCCGAGAAT CTGCAGGAGGTCCTGGGTCTGGGGGCCGGCATATTGAACCGCCAGATTCACTGTTCACTGAAGGGGAAAGAAAAGCTTGA GAGCTTAAATTGCAAAGACTGGGCTCAAGATCGCACCAAAGAGCAAATGATCCGCCTGGATGTCTATGATTATCAAAAAT CCGGTAAAAATCTGATTAAATTGCGCGGAAAAGTTTATGAGAATCTGACGGACATCCGCAAGATCGAAGCCGATGTTCCG ATGGAAGGAAAGATCACCGTCACTGAAACGGAATTGTACGCGCCAGAAGAGCCACCTGTGGCTCCGGCACCGGCTCCTGG GGTAACACCTGCGCCGGGTGCGCCGAAGGCGGGTGGTCCTGTTTCGATGCCGTCAGGCCAGGCTCCTGCCAGCAATGAAC CTCTGCACCCAAGGAATCCAGAGCTTGGAATGCCCGCGGGACGTGACGTGGATCCGGATGTGTTGTTGCAGCGTCAGCGC AGTCAGAACCCGGGAATGGACATGATTGAAGTGCCGCCTGAAAACGCGGACCCTTCGAATGAAGGTTTCCCGGAAGGCTA TGATCCGAACAATCCGCCGGTGCCGGAGCCGCAAGACGAATCTCAGCAACAGCAATTGCCCCCTCAAGAACAACCACAAG GAATTCCCAATGGCCGCTAA
Upstream 100 bases:
>100_bases AAAAGTGCTTCAATTTGATTCTTAGAAAGTTTAGAGTAAAGATTCAAACGAGGTAAAGTAAATTCTTGTTTTCACAGGGC CTATTTGCAAGACTCTAGGT
Downstream 100 bases:
>100_bases AATTGAACTTGGTAAAAAAGTCCCTAACTTCAAAATCCCATCCTCCAGCGGAGAGACATTGAGTCTGTCTTCGTTGAAGG GGAAAAAGGTCGTGCTTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MKLCCLIILSLTALGLSSCFWKKEDGPVVEEKVVKVLTPKAEDSAPRDKSLDVLVRYLAEADGIHREAWWVLTAARPPIS KSPFGKVQRALLASQNIKLTNKSMFRCDRYLVKRDVLGLLGYPQKGEVFEKCSDKADAKRIASFDVPKEGELNLIFYPEN LQEVLGLGAGILNRQIHCSLKGKEKLESLNCKDWAQDRTKEQMIRLDVYDYQKSGKNLIKLRGKVYENLTDIRKIEADVP MEGKITVTETELYAPEEPPVAPAPAPGVTPAPGAPKAGGPVSMPSGQAPASNEPLHPRNPELGMPAGRDVDPDVLLQRQR SQNPGMDMIEVPPENADPSNEGFPEGYDPNNPPVPEPQDESQQQQLPPQEQPQGIPNGR
Sequences:
>Translated_379_residues MKLCCLIILSLTALGLSSCFWKKEDGPVVEEKVVKVLTPKAEDSAPRDKSLDVLVRYLAEADGIHREAWWVLTAARPPIS KSPFGKVQRALLASQNIKLTNKSMFRCDRYLVKRDVLGLLGYPQKGEVFEKCSDKADAKRIASFDVPKEGELNLIFYPEN LQEVLGLGAGILNRQIHCSLKGKEKLESLNCKDWAQDRTKEQMIRLDVYDYQKSGKNLIKLRGKVYENLTDIRKIEADVP MEGKITVTETELYAPEEPPVAPAPAPGVTPAPGAPKAGGPVSMPSGQAPASNEPLHPRNPELGMPAGRDVDPDVLLQRQR SQNPGMDMIEVPPENADPSNEGFPEGYDPNNPPVPEPQDESQQQQLPPQEQPQGIPNGR >Mature_379_residues MKLCCLIILSLTALGLSSCFWKKEDGPVVEEKVVKVLTPKAEDSAPRDKSLDVLVRYLAEADGIHREAWWVLTAARPPIS KSPFGKVQRALLASQNIKLTNKSMFRCDRYLVKRDVLGLLGYPQKGEVFEKCSDKADAKRIASFDVPKEGELNLIFYPEN LQEVLGLGAGILNRQIHCSLKGKEKLESLNCKDWAQDRTKEQMIRLDVYDYQKSGKNLIKLRGKVYENLTDIRKIEADVP MEGKITVTETELYAPEEPPVAPAPAPGVTPAPGAPKAGGPVSMPSGQAPASNEPLHPRNPELGMPAGRDVDPDVLLQRQR SQNPGMDMIEVPPENADPSNEGFPEGYDPNNPPVPEPQDESQQQQLPPQEQPQGIPNGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41837; Mature: 41837
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLCCLIILSLTALGLSSCFWKKEDGPVVEEKVVKVLTPKAEDSAPRDKSLDVLVRYLAE CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH ADGIHREAWWVLTAARPPISKSPFGKVQRALLASQNIKLTNKSMFRCDRYLVKRDVLGLL HCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHC GYPQKGEVFEKCSDKADAKRIASFDVPKEGELNLIFYPENLQEVLGLGAGILNRQIHCSL CCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHCCHHHHCCEEEEEE KGKEKLESLNCKDWAQDRTKEQMIRLDVYDYQKSGKNLIKLRGKVYENLTDIRKIEADVP CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC MEGKITVTETELYAPEEPPVAPAPAPGVTPAPGAPKAGGPVSMPSGQAPASNEPLHPRNP CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ELGMPAGRDVDPDVLLQRQRSQNPGMDMIEVPPENADPSNEGFPEGYDPNNPPVPEPQDE CCCCCCCCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SQQQQLPPQEQPQGIPNGR HHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MKLCCLIILSLTALGLSSCFWKKEDGPVVEEKVVKVLTPKAEDSAPRDKSLDVLVRYLAE CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH ADGIHREAWWVLTAARPPISKSPFGKVQRALLASQNIKLTNKSMFRCDRYLVKRDVLGLL HCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHC GYPQKGEVFEKCSDKADAKRIASFDVPKEGELNLIFYPENLQEVLGLGAGILNRQIHCSL CCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHCCHHHHCCEEEEEE KGKEKLESLNCKDWAQDRTKEQMIRLDVYDYQKSGKNLIKLRGKVYENLTDIRKIEADVP CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC MEGKITVTETELYAPEEPPVAPAPAPGVTPAPGAPKAGGPVSMPSGQAPASNEPLHPRNP CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ELGMPAGRDVDPDVLLQRQRSQNPGMDMIEVPPENADPSNEGFPEGYDPNNPPVPEPQDE CCCCCCCCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SQQQQLPPQEQPQGIPNGR HHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA