| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42523285
Identifier: 42523285
GI number: 42523285
Start: 1722732
End: 1724189
Strand: Direct
Name: 42523285
Synonym: Bd1797
Alternate gene names: NA
Gene position: 1722732-1724189 (Clockwise)
Preceding gene: 42523284
Following gene: 42523286
Centisome position: 45.54
GC content: 53.77
Gene sequence:
>1458_bases ATGAAAAAGGGCGCCCTTTTAGGACTTCTGCTCGGACTTCTGGTCGGCCTATGGCAACCGCAAGCGCTGGCGATGAATCT TCAGGAATATCTTCAGGCTGTCATCAACAAGAACAAATCCATTCAGGCTTTTGATGTTTCCAAAGAGGCGGCGGAAGACC GTCGTGTCTCCGGTGACATTGAACTGGTCCCGGTTTTCACTGCGGGAGTGGGCTATCTGAATGACAAAAGCCCGTTGGGT CAGTTTGCGCAACTGGGGGGAACTCAGACCACCGCCACGGATTTGAAGCTGGGACTTGCCAAAAGATTTTCCTCTGGCAC CGATGTGGCTGTGACCGCCAACGCCACGGAAGTTGAGAATGAAGGGGCGCTATTAAATCCCAGTTTTCAAAAATTCTCCT ATGGCACCCTGGGACTGGGTTTGAGTCAGTCCTTGTGGAAGAACTCTTTTGGTAATGCCACCAGGTTGCGCCAGGATCGT CAGGAAGCCGTGGCGACGGCCGAGGTCGGCAGATTCGACTTGCAGAAAAAAGTCCTGCTGGTCAGCGCGGAAGCCGCGTA TTGGGATTATGTCTATCAGAATGAAAACCTGCGCATCGGCCGCGCTTCTTTGGAGCGGGCCCGTCGTATTGAATCCTGGA CCCGCCGTCGTGTGAACGATGGCATCAGTGACCGTGCTGACTTGTTGTCGGCTCAGGCTTTGGTCGCCGCTCGCCAGTTG CAACTGGTTTCGGCGGAGGATGATCTGGCGGCGGCAAAAAGACAGATCCGCGACTATCTTGAGCTGCGCGATGATGAAGC GATGCCGGAAATTTCCGGGGATATTTCCCGCTCACGCGCTTTGAACTCGATGGTGGATGGCAATGGCGGCAAGGTTGTGG CACTGGAGGCTTATCTGTCTTCATTGAATGCCCGGGCCATGTCCTTGGTGGCTAAAGAAACAGAAGACGGCTATCGTCCG GATCTGGTGCTTTCAGGATCCTACAACACCAACAACTTCCAGCCGGACAAAAGCATTCCGGATGCGACCTCCAAATGGAC GGACAGCAAACTTCCGACCTGGAAGGTGGGTCTGAATCTGATCTATTTGTTCGACACGGACGTCAAAGGATCTGCCCAGT CAGCGGCCCGCAAAGATGCTTTGGCCGCCCAGTTGCAAAGTGAAAGAAAGATCCTGGACAGCGAAAGCTCGTGGATCGAG CTGAATCGTCGTTATTCCGAGATGAACAAGCGGATTGAATCCGCCTCGCTCATTGCGCGTCTGCAGACTGATGCCGCCAA GGCTCAGACGGATTTGTTCAACAAGGGCCGTTCGATCACGGCCAATGTGATCAATGCGGAAGAAGATGCCGCGGATGCAG AGCTGACTTTGACCAGACTGAAATCAGAACAAAGAAAGATGGAGGCTCAGGCCCGCTTGTTCGTCACACTGGATGAAAAC AACCGGGAGGAGAAATAA
Upstream 100 bases:
>100_bases ACCCCCGTCGGGATGAGTTCAAATCATTAAATGTTTTGATTTGGATAGTCTGCTAAATTACTTTTTCCTTCGAAAGTGCA TTTCGGAAGGAAATTGAAAA
Downstream 100 bases:
>100_bases TATGAATTTGCCTGGTCTTTCGATTAAACGACCTATTTTTATTTCCTGTATCGTTATTCTGATGCTGATCCTGGGGGCGT TCTCGCTGCGCAAAATGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 485; Mature: 485
Protein sequence:
>485_residues MKKGALLGLLLGLLVGLWQPQALAMNLQEYLQAVINKNKSIQAFDVSKEAAEDRRVSGDIELVPVFTAGVGYLNDKSPLG QFAQLGGTQTTATDLKLGLAKRFSSGTDVAVTANATEVENEGALLNPSFQKFSYGTLGLGLSQSLWKNSFGNATRLRQDR QEAVATAEVGRFDLQKKVLLVSAEAAYWDYVYQNENLRIGRASLERARRIESWTRRRVNDGISDRADLLSAQALVAARQL QLVSAEDDLAAAKRQIRDYLELRDDEAMPEISGDISRSRALNSMVDGNGGKVVALEAYLSSLNARAMSLVAKETEDGYRP DLVLSGSYNTNNFQPDKSIPDATSKWTDSKLPTWKVGLNLIYLFDTDVKGSAQSAARKDALAAQLQSERKILDSESSWIE LNRRYSEMNKRIESASLIARLQTDAAKAQTDLFNKGRSITANVINAEEDAADAELTLTRLKSEQRKMEAQARLFVTLDEN NREEK
Sequences:
>Translated_485_residues MKKGALLGLLLGLLVGLWQPQALAMNLQEYLQAVINKNKSIQAFDVSKEAAEDRRVSGDIELVPVFTAGVGYLNDKSPLG QFAQLGGTQTTATDLKLGLAKRFSSGTDVAVTANATEVENEGALLNPSFQKFSYGTLGLGLSQSLWKNSFGNATRLRQDR QEAVATAEVGRFDLQKKVLLVSAEAAYWDYVYQNENLRIGRASLERARRIESWTRRRVNDGISDRADLLSAQALVAARQL QLVSAEDDLAAAKRQIRDYLELRDDEAMPEISGDISRSRALNSMVDGNGGKVVALEAYLSSLNARAMSLVAKETEDGYRP DLVLSGSYNTNNFQPDKSIPDATSKWTDSKLPTWKVGLNLIYLFDTDVKGSAQSAARKDALAAQLQSERKILDSESSWIE LNRRYSEMNKRIESASLIARLQTDAAKAQTDLFNKGRSITANVINAEEDAADAELTLTRLKSEQRKMEAQARLFVTLDEN NREEK >Mature_485_residues MKKGALLGLLLGLLVGLWQPQALAMNLQEYLQAVINKNKSIQAFDVSKEAAEDRRVSGDIELVPVFTAGVGYLNDKSPLG QFAQLGGTQTTATDLKLGLAKRFSSGTDVAVTANATEVENEGALLNPSFQKFSYGTLGLGLSQSLWKNSFGNATRLRQDR QEAVATAEVGRFDLQKKVLLVSAEAAYWDYVYQNENLRIGRASLERARRIESWTRRRVNDGISDRADLLSAQALVAARQL QLVSAEDDLAAAKRQIRDYLELRDDEAMPEISGDISRSRALNSMVDGNGGKVVALEAYLSSLNARAMSLVAKETEDGYRP DLVLSGSYNTNNFQPDKSIPDATSKWTDSKLPTWKVGLNLIYLFDTDVKGSAQSAARKDALAAQLQSERKILDSESSWIE LNRRYSEMNKRIESASLIARLQTDAAKAQTDLFNKGRSITANVINAEEDAADAELTLTRLKSEQRKMEAQARLFVTLDEN NREEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53512; Mature: 53512
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKGALLGLLLGLLVGLWQPQALAMNLQEYLQAVINKNKSIQAFDVSKEAAEDRRVSGDI CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCE ELVPVFTAGVGYLNDKSPLGQFAQLGGTQTTATDLKLGLAKRFSSGTDVAVTANATEVEN EEEEEEECCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCEECC EGALLNPSFQKFSYGTLGLGLSQSLWKNSFGNATRLRQDRQEAVATAEVGRFDLQKKVLL CCCEECCCHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE VSAEAAYWDYVYQNENLRIGRASLERARRIESWTRRRVNDGISDRADLLSAQALVAARQL EEECHHHHHEEEECCCCEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH QLVSAEDDLAAAKRQIRDYLELRDDEAMPEISGDISRSRALNSMVDGNGGKVVALEAYLS HEECCCHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHCCCCCEEEEHHHHHH SLNARAMSLVAKETEDGYRPDLVLSGSYNTNNFQPDKSIPDATSKWTDSKLPTWKVGLNL HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEE IYLFDTDVKGSAQSAARKDALAAQLQSERKILDSESSWIELNRRYSEMNKRIESASLIAR EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH LQTDAAKAQTDLFNKGRSITANVINAEEDAADAELTLTRLKSEQRKMEAQARLFVTLDEN HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCC NREEK CCCCC >Mature Secondary Structure MKKGALLGLLLGLLVGLWQPQALAMNLQEYLQAVINKNKSIQAFDVSKEAAEDRRVSGDI CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCE ELVPVFTAGVGYLNDKSPLGQFAQLGGTQTTATDLKLGLAKRFSSGTDVAVTANATEVEN EEEEEEECCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCEECC EGALLNPSFQKFSYGTLGLGLSQSLWKNSFGNATRLRQDRQEAVATAEVGRFDLQKKVLL CCCEECCCHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE VSAEAAYWDYVYQNENLRIGRASLERARRIESWTRRRVNDGISDRADLLSAQALVAARQL EEECHHHHHEEEECCCCEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH QLVSAEDDLAAAKRQIRDYLELRDDEAMPEISGDISRSRALNSMVDGNGGKVVALEAYLS HEECCCHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHCCCCCEEEEHHHHHH SLNARAMSLVAKETEDGYRPDLVLSGSYNTNNFQPDKSIPDATSKWTDSKLPTWKVGLNL HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEE IYLFDTDVKGSAQSAARKDALAAQLQSERKILDSESSWIELNRRYSEMNKRIESASLIAR EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH LQTDAAKAQTDLFNKGRSITANVINAEEDAADAELTLTRLKSEQRKMEAQARLFVTLDEN HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCC NREEK CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA