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The map label for this gene is ytrE [H]

Identifier: 42523259

GI number: 42523259

Start: 1702384

End: 1703094

Strand: Direct

Name: ytrE [H]

Synonym: Bd1769

Alternate gene names: 42523259

Gene position: 1702384-1703094 (Clockwise)

Preceding gene: 42523258

Following gene: 42523260

Centisome position: 45.0

GC content: 47.26

Gene sequence:

>711_bases
ATGAAAATCGAAAATCTAAAATTTGAAGGTGTGTCTTTCACTCATGAAGGGCAGGAACCAATTGTTCAGAATGTGGAGTT
TGATTTTCCCATGAATGAAATCCTGTGGGTGAAAGCCGATGAAGGCGCCGGGAAAAGCTCCTTGCTGCAGATCTTGGCGG
GCCTGCAGATTCCCCAGTCCGGGAAGTATCTGATCAACGGTGAAAACGTGGTGGATATGTCCTTTGAGGAGTTTTTGCCA
TTCCGACTGAAGATTGGCTATTCCTTCGATTATGGCGGTCTGATCAACAACCGCACTTTGTATGACAATCTGATGTTGCC
GCTTTTGTATCATAAGGTTTTGACGCCCGAAGAGTGCAAGTCCCGGGTGGAGGCGATGATCAAGGAGTTCGGCATTGAGA
AATTTGCCCATGAAAGACCGGCCCATGTTCCGGGTCGCATTCGCAAGCTGACGTGCCTGATGCGCGCGGTGGTGATGCAG
CCGGAAATGCTGCTGTTGGATGATCCAAGCGTGGGTCTGGGGCAGGACAGTGTTTACATCTTTGCCGATCATATTCATCG
TCTGCGCAAAGAGGGGCACTTGAAGCATATCTTTATCAGTTCCTATGATGAAAAGTTTATGAATCTTTTCAATTATCAGA
TCATTCATCTGGATGACGGGCAGATTTACCTTCAGACTGTGGATCCTGAGAAGCGAGTTGTTCATTTATGA

Upstream 100 bases:

>100_bases
CCCAGGCCGTGGTGAACAGTATTATATTTGTGGTCGTGTTTAATTTGATTGTGACAGCTTTGTTTTATCTGAATCAACTT
CGCAGTTTAGGGGTGGTGTG

Downstream 100 bases:

>100_bases
TGAAAGTGAAGTTCAACAAGTTTGAAAGAATTGCCGGCCTGTTTGTGGTTCTGGCCATCGTGGGTGTGATCCTCACGGCC
ATCAGTGCGGCAGTGAAGCA

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKIENLKFEGVSFTHEGQEPIVQNVEFDFPMNEILWVKADEGAGKSSLLQILAGLQIPQSGKYLINGENVVDMSFEEFLP
FRLKIGYSFDYGGLINNRTLYDNLMLPLLYHKVLTPEECKSRVEAMIKEFGIEKFAHERPAHVPGRIRKLTCLMRAVVMQ
PEMLLLDDPSVGLGQDSVYIFADHIHRLRKEGHLKHIFISSYDEKFMNLFNYQIIHLDDGQIYLQTVDPEKRVVHL

Sequences:

>Translated_236_residues
MKIENLKFEGVSFTHEGQEPIVQNVEFDFPMNEILWVKADEGAGKSSLLQILAGLQIPQSGKYLINGENVVDMSFEEFLP
FRLKIGYSFDYGGLINNRTLYDNLMLPLLYHKVLTPEECKSRVEAMIKEFGIEKFAHERPAHVPGRIRKLTCLMRAVVMQ
PEMLLLDDPSVGLGQDSVYIFADHIHRLRKEGHLKHIFISSYDEKFMNLFNYQIIHLDDGQIYLQTVDPEKRVVHL
>Mature_236_residues
MKIENLKFEGVSFTHEGQEPIVQNVEFDFPMNEILWVKADEGAGKSSLLQILAGLQIPQSGKYLINGENVVDMSFEEFLP
FRLKIGYSFDYGGLINNRTLYDNLMLPLLYHKVLTPEECKSRVEAMIKEFGIEKFAHERPAHVPGRIRKLTCLMRAVVMQ
PEMLLLDDPSVGLGQDSVYIFADHIHRLRKEGHLKHIFISSYDEKFMNLFNYQIIHLDDGQIYLQTVDPEKRVVHL

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1127

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1789873, Length=220, Percent_Identity=27.2727272727273, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI87081834, Length=209, Percent_Identity=28.2296650717703, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786398, Length=162, Percent_Identity=29.6296296296296, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789586, Length=228, Percent_Identity=24.5614035087719, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787029, Length=217, Percent_Identity=24.4239631336406, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788761, Length=212, Percent_Identity=23.1132075471698, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87081791, Length=164, Percent_Identity=29.8780487804878, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1787089, Length=205, Percent_Identity=23.4146341463415, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786703, Length=202, Percent_Identity=26.7326732673267, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787105, Length=206, Percent_Identity=23.7864077669903, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787370, Length=220, Percent_Identity=24.0909090909091, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789891, Length=216, Percent_Identity=25, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87081709, Length=184, Percent_Identity=23.9130434782609, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI48994943, Length=189, Percent_Identity=30.6878306878307, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789032, Length=180, Percent_Identity=25.5555555555556, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788506, Length=217, Percent_Identity=24.8847926267281, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788225, Length=245, Percent_Identity=22.8571428571429, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786872, Length=184, Percent_Identity=25, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI145693107, Length=204, Percent_Identity=24.0196078431373, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786698, Length=201, Percent_Identity=25.8706467661692, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789672, Length=214, Percent_Identity=20.0934579439252, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=194, Percent_Identity=24.7422680412371, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115534520, Length=203, Percent_Identity=23.1527093596059, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 27282; Mature: 27282

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIENLKFEGVSFTHEGQEPIVQNVEFDFPMNEILWVKADEGAGKSSLLQILAGLQIPQS
CCCCCEEECCEEECCCCCCHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCC
GKYLINGENVVDMSFEEFLPFRLKIGYSFDYGGLINNRTLYDNLMLPLLYHKVLTPEECK
CCEEECCCCEEECCHHHCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
SRVEAMIKEFGIEKFAHERPAHVPGRIRKLTCLMRAVVMQPEMLLLDDPSVGLGQDSVYI
HHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE
FADHIHRLRKEGHLKHIFISSYDEKFMNLFNYQIIHLDDGQIYLQTVDPEKRVVHL
EHHHHHHHHHCCCEEEEEECCHHHHHHHHHCEEEEEEECCEEEEEEECCCCCEECC
>Mature Secondary Structure
MKIENLKFEGVSFTHEGQEPIVQNVEFDFPMNEILWVKADEGAGKSSLLQILAGLQIPQS
CCCCCEEECCEEECCCCCCHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCC
GKYLINGENVVDMSFEEFLPFRLKIGYSFDYGGLINNRTLYDNLMLPLLYHKVLTPEECK
CCEEECCCCEEECCHHHCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
SRVEAMIKEFGIEKFAHERPAHVPGRIRKLTCLMRAVVMQPEMLLLDDPSVGLGQDSVYI
HHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEE
FADHIHRLRKEGHLKHIFISSYDEKFMNLFNYQIIHLDDGQIYLQTVDPEKRVVHL
EHHHHHHHHHCCCEEEEEECCHHHHHHHHHCEEEEEEECCEEEEEEECCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]