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The map label for this gene is ywbI [H]

Identifier: 42523239

GI number: 42523239

Start: 1679934

End: 1680806

Strand: Direct

Name: ywbI [H]

Synonym: Bd1745

Alternate gene names: 42523239

Gene position: 1679934-1680806 (Clockwise)

Preceding gene: 42523238

Following gene: 42523244

Centisome position: 44.41

GC content: 49.48

Gene sequence:

>873_bases
GTGGATAAGAGTCCGGATTGTGATAGGTGTTTACTTATGAAGTACAAGATCCGCGATATCGAAAATTTTATCCATACCAG
CACCTGCTCCACGATCATTCAGGCGGCGCAAAAGCTTGAAATCAGCCAGCCGGCACTTTCAGAAAGCCTGAAACGTCTTG
AAGCAGACTTGGGCACAATTCTTTTCTATCGTTCCCGGTCTGGAATTCAGCTGACCCCGAGTGGTCGGGTGTTTTTGGGA
AAAGCCCAAAGAGCGCTGCAGTCTTTGCAGGAACTGGATTTTTCTTCTGACCAAGTGCGTGTTTTTGCCGGGCGCACGGT
GACCATTGGTTGTCATGGGACCGTCGCTCAGTACTCCATCCCCAAAGCTGTTGCTTATTTGAAGGAAAAAGCACCGGACT
TTAAAATTGATCTTCGTCATGACCTTTCACGCAGTATTCAGACGGAAATTCAAAGGGGAAATATTGATATCGGCGTGGTG
ATCAATCCTGCCGAGGTCCCGGACCTGGTGATTCAAAAGATGGCCCAGGACACGGTCGGTGTTTGGGCGGCAAAGAATGA
ATCCTACGACACCATCATCTGCAACCTGAATTTGTTCCAGACGCAGTCCATCCTGAAAAAATGGAAGGGCCGCCCGGAAA
AGGTGATTTCCACCGACAGCCTGGAGCTGATTTGTAAAATGGCGCATGAGCGCATTGGCTACGGAGTTGTTCCGGGGCGC
GCCGTGGAGATGTCCGGACTTAACCTGAAACACCTTTCTCAGTTTCCAGTCTACAGGGATCAGATTTCTTTGGTGTACCG
TCCCGAGTTTGGAAAAATTCCGGCAGAGAAAATGGTCATTGAGGCTTTGAAGCATTCCATCCTCGGGCTATAG

Upstream 100 bases:

>100_bases
TGATGGGAGACTCGGCCCTTCGCTATCAATCCAAGGTGTTTAATCCACAGTTCCTGAATGAAAAGAACCTGAAAATTATG
CCTTTGATTCATAGTTAACG

Downstream 100 bases:

>100_bases
GCCCGAAGGATAGGTTTCAGGTATTTCGCTCCGGTCGATTTCCTGTTTCAGCGGGCTCAGGGCGCGGGACTCATCAAAAA
ACAAAAAACTGTCATAGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MDKSPDCDRCLLMKYKIRDIENFIHTSTCSTIIQAAQKLEISQPALSESLKRLEADLGTILFYRSRSGIQLTPSGRVFLG
KAQRALQSLQELDFSSDQVRVFAGRTVTIGCHGTVAQYSIPKAVAYLKEKAPDFKIDLRHDLSRSIQTEIQRGNIDIGVV
INPAEVPDLVIQKMAQDTVGVWAAKNESYDTIICNLNLFQTQSILKKWKGRPEKVISTDSLELICKMAHERIGYGVVPGR
AVEMSGLNLKHLSQFPVYRDQISLVYRPEFGKIPAEKMVIEALKHSILGL

Sequences:

>Translated_290_residues
MDKSPDCDRCLLMKYKIRDIENFIHTSTCSTIIQAAQKLEISQPALSESLKRLEADLGTILFYRSRSGIQLTPSGRVFLG
KAQRALQSLQELDFSSDQVRVFAGRTVTIGCHGTVAQYSIPKAVAYLKEKAPDFKIDLRHDLSRSIQTEIQRGNIDIGVV
INPAEVPDLVIQKMAQDTVGVWAAKNESYDTIICNLNLFQTQSILKKWKGRPEKVISTDSLELICKMAHERIGYGVVPGR
AVEMSGLNLKHLSQFPVYRDQISLVYRPEFGKIPAEKMVIEALKHSILGL
>Mature_290_residues
MDKSPDCDRCLLMKYKIRDIENFIHTSTCSTIIQAAQKLEISQPALSESLKRLEADLGTILFYRSRSGIQLTPSGRVFLG
KAQRALQSLQELDFSSDQVRVFAGRTVTIGCHGTVAQYSIPKAVAYLKEKAPDFKIDLRHDLSRSIQTEIQRGNIDIGVV
INPAEVPDLVIQKMAQDTVGVWAAKNESYDTIICNLNLFQTQSILKKWKGRPEKVISTDSLELICKMAHERIGYGVVPGR
AVEMSGLNLKHLSQFPVYRDQISLVYRPEFGKIPAEKMVIEALKHSILGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=150, Percent_Identity=26, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI157672245, Length=170, Percent_Identity=27.6470588235294, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788887, Length=154, Percent_Identity=26.6233766233766, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081904, Length=146, Percent_Identity=28.7671232876712, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=152, Percent_Identity=26.9736842105263, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32504; Mature: 32504

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKSPDCDRCLLMKYKIRDIENFIHTSTCSTIIQAAQKLEISQPALSESLKRLEADLGTI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEE
LFYRSRSGIQLTPSGRVFLGKAQRALQSLQELDFSSDQVRVFAGRTVTIGCHGTVAQYSI
EEEECCCCEEECCCCCEEEHHHHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCHHHHHH
PKAVAYLKEKAPDFKIDLRHDLSRSIQTEIQRGNIDIGVVINPAEVPDLVIQKMAQDTVG
HHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHE
VWAAKNESYDTIICNLNLFQTQSILKKWKGRPEKVISTDSLELICKMAHERIGYGVVPGR
EEEECCCCCCEEEEECCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCC
AVEMSGLNLKHLSQFPVYRDQISLVYRPEFGKIPAEKMVIEALKHSILGL
EEEECCCCHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDKSPDCDRCLLMKYKIRDIENFIHTSTCSTIIQAAQKLEISQPALSESLKRLEADLGTI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEE
LFYRSRSGIQLTPSGRVFLGKAQRALQSLQELDFSSDQVRVFAGRTVTIGCHGTVAQYSI
EEEECCCCEEECCCCCEEEHHHHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCHHHHHH
PKAVAYLKEKAPDFKIDLRHDLSRSIQTEIQRGNIDIGVVINPAEVPDLVIQKMAQDTVG
HHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHE
VWAAKNESYDTIICNLNLFQTQSILKKWKGRPEKVISTDSLELICKMAHERIGYGVVPGR
EEEECCCCCCEEEEECCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCC
AVEMSGLNLKHLSQFPVYRDQISLVYRPEFGKIPAEKMVIEALKHSILGL
EEEECCCCHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]