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The map label for this gene is rbfA

Identifier: 42523055

GI number: 42523055

Start: 1474785

End: 1475189

Strand: Direct

Name: rbfA

Synonym: Bd1548

Alternate gene names: 42523055

Gene position: 1474785-1475189 (Clockwise)

Preceding gene: 42523054

Following gene: 42523056

Centisome position: 38.99

GC content: 48.89

Gene sequence:

>405_bases
ATGAAGAATATGGGTGATGGGCGCCGTATTGCCCGCGTTGAGCGTGAAATTCAAGCGACCATTGCTCAGTTCCTGATTCG
TGGTTTCAAAACACCGTTGCCAGGTCTGGTGACGGTGGCTTCTGTAAAAATGCCTGCGGATCTTCGTGCGGCAAAAGTTT
ATGTCAGTATTCTTGGAGACGAAAAGCAACAGGATGAAGCCCTGGATCTTCTTCAAGAGCGTGCCTTTGAAATTCAGAAC
TACATCGGCAAAGAGCTGAAAATGCGTTATTGCCCGAAGTTGACCTTTTACCTGGATCACGCCACCGAGCAGGTGCTGAA
GGTTGAAAAAATCCTTCACGAGCTTGAGCTTGAGCGCAAGGCCAATAACCCTGGCGAAGGTTCCGACGAATCCGATGACG
AATAA

Upstream 100 bases:

>100_bases
GTATCGGTATCGAGAACTACAACGACGTTAAAGTGGGTGACCAGATGGAAGCCTTCGTTAAAAAAGAAGTGGCTCGTGAG
CTAGAGGGCGGAGCTAACTA

Downstream 100 bases:

>100_bases
AAATCAATTCAATGGTCTGCTGCTGGTGGATAAACCTTCAGGGATCTCCAGCCATGACGTTGTGGCGCGTTTGCGCCGCA
TTCTTTCCACGCGCGCTGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MKNMGDGRRIARVEREIQATIAQFLIRGFKTPLPGLVTVASVKMPADLRAAKVYVSILGDEKQQDEALDLLQERAFEIQN
YIGKELKMRYCPKLTFYLDHATEQVLKVEKILHELELERKANNPGEGSDESDDE

Sequences:

>Translated_134_residues
MKNMGDGRRIARVEREIQATIAQFLIRGFKTPLPGLVTVASVKMPADLRAAKVYVSILGDEKQQDEALDLLQERAFEIQN
YIGKELKMRYCPKLTFYLDHATEQVLKVEKILHELELERKANNPGEGSDESDDE
>Mature_134_residues
MKNMGDGRRIARVEREIQATIAQFLIRGFKTPLPGLVTVASVKMPADLRAAKVYVSILGDEKQQDEALDLLQERAFEIQN
YIGKELKMRYCPKLTFYLDHATEQVLKVEKILHELELERKANNPGEGSDESDDE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=120, Percent_Identity=34.1666666666667, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_BDEBA (Q6MMS5)

Other databases:

- EMBL:   BX842650
- RefSeq:   NP_968435.1
- ProteinModelPortal:   Q6MMS5
- SMR:   Q6MMS5
- GeneID:   2735495
- GenomeReviews:   BX842601_GR
- KEGG:   bba:Bd1548
- NMPDR:   fig|264462.1.peg.1405
- HOGENOM:   HBG751055
- OMA:   ILHELEL
- PhylomeDB:   Q6MMS5
- BioCyc:   BBAC264462:BD1548-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15277; Mature: 15277

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNMGDGRRIARVEREIQATIAQFLIRGFKTPLPGLVTVASVKMPADLRAAKVYVSILGD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCC
EKQQDEALDLLQERAFEIQNYIGKELKMRYCPKLTFYLDHATEQVLKVEKILHELELERK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANNPGEGSDESDDE
CCCCCCCCCCCCCC
>Mature Secondary Structure
MKNMGDGRRIARVEREIQATIAQFLIRGFKTPLPGLVTVASVKMPADLRAAKVYVSILGD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCC
EKQQDEALDLLQERAFEIQNYIGKELKMRYCPKLTFYLDHATEQVLKVEKILHELELERK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANNPGEGSDESDDE
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA