| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42523047
Identifier: 42523047
GI number: 42523047
Start: 1464026
End: 1465600
Strand: Direct
Name: 42523047
Synonym: Bd1540
Alternate gene names: NA
Gene position: 1464026-1465600 (Clockwise)
Preceding gene: 42523046
Following gene: 42523049
Centisome position: 38.7
GC content: 47.87
Gene sequence:
>1575_bases ATGAAAAAAATTATTTTGGCAATGTTGTTGTTATCGTTGCAGACGTATGCGCAGACAATCAGTTACAGCGAAAACAGTTC TTTGAGGCTCGGGGCGGGGGTGGACTTGGACCACCCCGACAAGGCCAAGGCCAATTGTGTTAAAAGTTCTGATCGTGAAT GGCTGGATGGGAACACTCCCGTTTCAACAACGTTTGACCTAAGCATGATTGAGACCTCCAGCGAGCTGGAAAGAAAAATG AATTTTGATGTTCAGTTGAATGCGGCGGGCACAATCAAGGCCGTGAATTTTGACAGTCAGAATTACTACCGGGTGATTCA TAAGTTTCTGGAAAGCAAGAACAGCCTGAATTTTGCGCTGACGGCGGAATTTTCCTACGGTCGCAAAGGCCTGACAGAAG AGTCCCTGAAGCCCGAGTATCAGACCCTGCTGGACAACGGCAAGTGGCAGGAAGTTTTGAGAAGATGCGGAACGCACTTT GTTTCAGAGGAGATTCACCGATCCAAAGTGGTCGTTTTGATTCATGTGAAGAATTCCCGCACCGAAGACATCAAGGAACA GATTCTGGATCTGAAGAACAAACTGAAAGTTCCCAAGCTGAATTTCGGCGGGGATTTGAATGTTCAGTACAAAGAATTCA TCCGCAAGCTGGATAAGATTGGTTCGGTGGAGGTGAAAGTGGTTTCTGTCGGCGGGCAGGGCGCAGATGCGTTGGGTGTC TTTGCCAATGAAATTGTGGTGGATGATCTGCAAAGCATAAAAAACGCCGCAGAAAAGTACTTTAGAAGCTTTACGATCGA GAATTCCCCGGTGTTCGCCTATGTGGTAAAACCGTTGGATATTTTCGAGGGCGCTGAAAACATCCGTCCAAGACAGAAAA AGTGGCAGCACTTGAAATTACTGGCTGACTGGATTTTTGAGCACGAGGAACTGCTGGCAGAAATCAAAGGTATGCAAGCC CGGGTCAGCAAAGCCCTTTATGCCGTGTACTTTGAACCAAAGTCGATGGCTCTGGAGACCAGGATCAACGAGATTCGCTC TCGGGCTGAAGAGTGTCTGGACCGCTACAACTGTGACAACCTTCCGGCCGTGGCACCATTTCCGGTTCATGTCCCATCCC GCGCCGTCAGTGCGGTTTCATTGAACACGCAGTGTGGGTATCTGCCGGTAAGAAATTCCAACATGCAGATTCTAAGTGAT GTCCGCGTAGGACTTGATGTGGATGTGATGTATGCCAAGGACATTGAAAATATCGAATTGTTCCGTCTGGATCAAAACGG CGAATTCCAGAATGCAAACTATGGACAGAATGAAGAACTGACGATGGCAAACAATATTCTGGAATCCGAAGTGGGCCGCA TCAGAAGATATCAGTCGGTGAACGAGTTTTCCGCCAACCACGTGCTTTCAGACAGCGCCATCCTGTCAGCACAAGACAGC GTGCTAAAGGCCCAGGAAATCTTCAACGCCGCCTTTAATTCAATCTACATCATGAAGATCCGATTTAAACAGGGTCAGGA CTTAACCCAGATTCTGGGGACCCCTCCGATGAAAAACTGCTCGATCACAAGATAA
Upstream 100 bases:
>100_bases TCGGTTCCTGACGACTATTTCGACAAGCTGCCCGAGCTGGGAACAGAAAAGAATTTGAAAATACTCAGAATGAAACTTCC TTAAGAGCAGGGACAAAGTT
Downstream 100 bases:
>100_bases CAGTGGATCGCAACTTAATCCAATGCGGGGGCGCGCCCCCGCACCGCAAACCGAGAGCCCCAGCTACCCAAATCTTCCCC TTTAAATTCAAGTTCCACAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 524; Mature: 524
Protein sequence:
>524_residues MKKIILAMLLLSLQTYAQTISYSENSSLRLGAGVDLDHPDKAKANCVKSSDREWLDGNTPVSTTFDLSMIETSSELERKM NFDVQLNAAGTIKAVNFDSQNYYRVIHKFLESKNSLNFALTAEFSYGRKGLTEESLKPEYQTLLDNGKWQEVLRRCGTHF VSEEIHRSKVVVLIHVKNSRTEDIKEQILDLKNKLKVPKLNFGGDLNVQYKEFIRKLDKIGSVEVKVVSVGGQGADALGV FANEIVVDDLQSIKNAAEKYFRSFTIENSPVFAYVVKPLDIFEGAENIRPRQKKWQHLKLLADWIFEHEELLAEIKGMQA RVSKALYAVYFEPKSMALETRINEIRSRAEECLDRYNCDNLPAVAPFPVHVPSRAVSAVSLNTQCGYLPVRNSNMQILSD VRVGLDVDVMYAKDIENIELFRLDQNGEFQNANYGQNEELTMANNILESEVGRIRRYQSVNEFSANHVLSDSAILSAQDS VLKAQEIFNAAFNSIYIMKIRFKQGQDLTQILGTPPMKNCSITR
Sequences:
>Translated_524_residues MKKIILAMLLLSLQTYAQTISYSENSSLRLGAGVDLDHPDKAKANCVKSSDREWLDGNTPVSTTFDLSMIETSSELERKM NFDVQLNAAGTIKAVNFDSQNYYRVIHKFLESKNSLNFALTAEFSYGRKGLTEESLKPEYQTLLDNGKWQEVLRRCGTHF VSEEIHRSKVVVLIHVKNSRTEDIKEQILDLKNKLKVPKLNFGGDLNVQYKEFIRKLDKIGSVEVKVVSVGGQGADALGV FANEIVVDDLQSIKNAAEKYFRSFTIENSPVFAYVVKPLDIFEGAENIRPRQKKWQHLKLLADWIFEHEELLAEIKGMQA RVSKALYAVYFEPKSMALETRINEIRSRAEECLDRYNCDNLPAVAPFPVHVPSRAVSAVSLNTQCGYLPVRNSNMQILSD VRVGLDVDVMYAKDIENIELFRLDQNGEFQNANYGQNEELTMANNILESEVGRIRRYQSVNEFSANHVLSDSAILSAQDS VLKAQEIFNAAFNSIYIMKIRFKQGQDLTQILGTPPMKNCSITR >Mature_524_residues MKKIILAMLLLSLQTYAQTISYSENSSLRLGAGVDLDHPDKAKANCVKSSDREWLDGNTPVSTTFDLSMIETSSELERKM NFDVQLNAAGTIKAVNFDSQNYYRVIHKFLESKNSLNFALTAEFSYGRKGLTEESLKPEYQTLLDNGKWQEVLRRCGTHF VSEEIHRSKVVVLIHVKNSRTEDIKEQILDLKNKLKVPKLNFGGDLNVQYKEFIRKLDKIGSVEVKVVSVGGQGADALGV FANEIVVDDLQSIKNAAEKYFRSFTIENSPVFAYVVKPLDIFEGAENIRPRQKKWQHLKLLADWIFEHEELLAEIKGMQA RVSKALYAVYFEPKSMALETRINEIRSRAEECLDRYNCDNLPAVAPFPVHVPSRAVSAVSLNTQCGYLPVRNSNMQILSD VRVGLDVDVMYAKDIENIELFRLDQNGEFQNANYGQNEELTMANNILESEVGRIRRYQSVNEFSANHVLSDSAILSAQDS VLKAQEIFNAAFNSIYIMKIRFKQGQDLTQILGTPPMKNCSITR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59378; Mature: 59378
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIILAMLLLSLQTYAQTISYSENSSLRLGAGVDLDHPDKAKANCVKSSDREWLDGNTP CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCC VSTTFDLSMIETSSELERKMNFDVQLNAAGTIKAVNFDSQNYYRVIHKFLESKNSLNFAL CCEEEEEHHHHCHHHHHHHCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEE TAEFSYGRKGLTEESLKPEYQTLLDNGKWQEVLRRCGTHFVSEEIHRSKVVVLIHVKNSR EEECCCCCCCCCHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC TEDIKEQILDLKNKLKVPKLNFGGDLNVQYKEFIRKLDKIGSVEVKVVSVGGQGADALGV HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHH FANEIVVDDLQSIKNAAEKYFRSFTIENSPVFAYVVKPLDIFEGAENIRPRQKKWQHLKL HHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEECHHHHHCCCCCCCCHHHHHHHHHH LADWIFEHEELLAEIKGMQARVSKALYAVYFEPKSMALETRINEIRSRAEECLDRYNCDN HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC LPAVAPFPVHVPSRAVSAVSLNTQCGYLPVRNSNMQILSDVRVGLDVDVMYAKDIENIEL CCCCCCCCCCCCCHHHEEEEECCCCCEEEECCCCHHHHHHHHCCCCEEEEEECCCCCEEE FRLDQNGEFQNANYGQNEELTMANNILESEVGRIRRYQSVNEFSANHVLSDSAILSAQDS EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHH VLKAQEIFNAAFNSIYIMKIRFKQGQDLTQILGTPPMKNCSITR HHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHCCCCCCCCCCCC >Mature Secondary Structure MKKIILAMLLLSLQTYAQTISYSENSSLRLGAGVDLDHPDKAKANCVKSSDREWLDGNTP CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCC VSTTFDLSMIETSSELERKMNFDVQLNAAGTIKAVNFDSQNYYRVIHKFLESKNSLNFAL CCEEEEEHHHHCHHHHHHHCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEE TAEFSYGRKGLTEESLKPEYQTLLDNGKWQEVLRRCGTHFVSEEIHRSKVVVLIHVKNSR EEECCCCCCCCCHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC TEDIKEQILDLKNKLKVPKLNFGGDLNVQYKEFIRKLDKIGSVEVKVVSVGGQGADALGV HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHH FANEIVVDDLQSIKNAAEKYFRSFTIENSPVFAYVVKPLDIFEGAENIRPRQKKWQHLKL HHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEECHHHHHCCCCCCCCHHHHHHHHHH LADWIFEHEELLAEIKGMQARVSKALYAVYFEPKSMALETRINEIRSRAEECLDRYNCDN HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC LPAVAPFPVHVPSRAVSAVSLNTQCGYLPVRNSNMQILSDVRVGLDVDVMYAKDIENIEL CCCCCCCCCCCCCHHHEEEEECCCCCEEEECCCCHHHHHHHHCCCCEEEEEECCCCCEEE FRLDQNGEFQNANYGQNEELTMANNILESEVGRIRRYQSVNEFSANHVLSDSAILSAQDS EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHH VLKAQEIFNAAFNSIYIMKIRFKQGQDLTQILGTPPMKNCSITR HHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA