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The map label for this gene is algB [H]

Identifier: 42523029

GI number: 42523029

Start: 1445344

End: 1446300

Strand: Direct

Name: algB [H]

Synonym: Bd1522

Alternate gene names: 42523029

Gene position: 1445344-1446300 (Clockwise)

Preceding gene: 42523028

Following gene: 42523032

Centisome position: 38.21

GC content: 53.61

Gene sequence:

>957_bases
GTGACGGATGACTCACGCATCATCGCCAAGAGCCCGCGCTTTTTGGAGGTGCTGGATCTGGCTCGGCGGGTGGCGGCCAG
TTCGGCCAATGTTCTGATCACAGGGGAAAGTGGCACCGGGAAAGAAGTCATCGCCCGCTTGATTCACGACCAGAGCGCCC
GACAACGGAAGTCCTTTGTGCCGATCAATTGTTCTGCCATTCCAGAACCTCTTTTGGAGTCGGAACTTTTTGGATACGCA
CGGGGTGCTTTCACCGGCGCCATGAATGCACGCCAGGGTTTGTTTGAAGAGGCTGATGGCGGGACGCTGTTCCTGGATGA
AATTGGTGATCTGGATTTGCATCTACAGGCCAAGCTTTTGCGTGTGTTGCAGGAAAAGAAGGTAAAACGGGTGGGGGAAA
ACCACTATCGCCCTTTGAACCTGCGTATTGTGGCGGCGACTCACAATGATCTTGAAGGTGACGTACAGGAGAAACGCTTT
CGCGAGGATCTGTATTTTCGTTTAAAGGTCGTGTCGATAAAAATCCCCCCGCTGCGCGAGCGCACCGAGGATATTCTGCC
GCTGGCACACCACTTTCTGGACAAGTTCACCAGGCGATATCAGATGCCAGGGAAAAAATGGAATCGCGATGTCGAGGATT
TCCTGCTGACCCGCCCGTGGACGGGCAATGTGCGAGAGCTGGAAAATACCATAGAACGGGCCGTGGTGCTGAGCCCCGTG
GACCATATCCCACTGAAGGTTCTGCAGGATGATCTGCAGGTCCGGGAGTGCAGCCTGGATCAGATTTTTGAAAAGATGCA
TCAGATGCAAGGTCGCTTTTTGTCTTTGGAGGAATTGACCCGGGCCTACATTGAGTATGTGCTGAAATCCAATCGGGGAG
CCCGTGAAAAAAGCTCCCGCGATCTGGGCATTGACAGAAAAACACTGTATCGCAAAACCCACGCGCCTCTTCAGTGA

Upstream 100 bases:

>100_bases
CCATGGTGGAGGTTCTGGATTTTATCGAAGAAGGCCGCATCGTGCCCGAGCAGAACTGGTGTGAATGGCATGAACCCCCA
CAGCACCATCGAGGTGGTCT

Downstream 100 bases:

>100_bases
AGATTTGCAGAGGGACGTTCGGCTTCGGCGCGAGCGCGGTGCAGTTCGGACTCGGAACTGGTGGCAGAATTGGACGGGCT
GCGGGCTCGAAGTTCGCGGC

Product: NtrC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTDDSRIIAKSPRFLEVLDLARRVAASSANVLITGESGTGKEVIARLIHDQSARQRKSFVPINCSAIPEPLLESELFGYA
RGAFTGAMNARQGLFEEADGGTLFLDEIGDLDLHLQAKLLRVLQEKKVKRVGENHYRPLNLRIVAATHNDLEGDVQEKRF
REDLYFRLKVVSIKIPPLRERTEDILPLAHHFLDKFTRRYQMPGKKWNRDVEDFLLTRPWTGNVRELENTIERAVVLSPV
DHIPLKVLQDDLQVRECSLDQIFEKMHQMQGRFLSLEELTRAYIEYVLKSNRGAREKSSRDLGIDRKTLYRKTHAPLQ

Sequences:

>Translated_318_residues
MTDDSRIIAKSPRFLEVLDLARRVAASSANVLITGESGTGKEVIARLIHDQSARQRKSFVPINCSAIPEPLLESELFGYA
RGAFTGAMNARQGLFEEADGGTLFLDEIGDLDLHLQAKLLRVLQEKKVKRVGENHYRPLNLRIVAATHNDLEGDVQEKRF
REDLYFRLKVVSIKIPPLRERTEDILPLAHHFLDKFTRRYQMPGKKWNRDVEDFLLTRPWTGNVRELENTIERAVVLSPV
DHIPLKVLQDDLQVRECSLDQIFEKMHQMQGRFLSLEELTRAYIEYVLKSNRGAREKSSRDLGIDRKTLYRKTHAPLQ
>Mature_317_residues
TDDSRIIAKSPRFLEVLDLARRVAASSANVLITGESGTGKEVIARLIHDQSARQRKSFVPINCSAIPEPLLESELFGYAR
GAFTGAMNARQGLFEEADGGTLFLDEIGDLDLHLQAKLLRVLQEKKVKRVGENHYRPLNLRIVAATHNDLEGDVQEKRFR
EDLYFRLKVVSIKIPPLRERTEDILPLAHHFLDKFTRRYQMPGKKWNRDVEDFLLTRPWTGNVRELENTIERAVVLSPVD
HIPLKVLQDDLQVRECSLDQIFEKMHQMQGRFLSLEELTRAYIEYVLKSNRGAREKSSRDLGIDRKTLYRKTHAPLQ

Specific function: Positive regulator of the alginate biosynthetic gene algD [H]

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788905, Length=305, Percent_Identity=46.2295081967213, Blast_Score=258, Evalue=3e-70,
Organism=Escherichia coli, GI1790437, Length=306, Percent_Identity=46.4052287581699, Blast_Score=257, Evalue=6e-70,
Organism=Escherichia coli, GI1788550, Length=322, Percent_Identity=45.0310559006211, Blast_Score=248, Evalue=3e-67,
Organism=Escherichia coli, GI87082117, Length=232, Percent_Identity=53.448275862069, Blast_Score=236, Evalue=1e-63,
Organism=Escherichia coli, GI1790299, Length=323, Percent_Identity=41.4860681114551, Blast_Score=233, Evalue=1e-62,
Organism=Escherichia coli, GI1789233, Length=301, Percent_Identity=42.5249169435216, Blast_Score=225, Evalue=2e-60,
Organism=Escherichia coli, GI1789087, Length=232, Percent_Identity=50.8620689655172, Blast_Score=217, Evalue=9e-58,
Organism=Escherichia coli, GI1786524, Length=322, Percent_Identity=41.9254658385093, Blast_Score=214, Evalue=5e-57,
Organism=Escherichia coli, GI87082152, Length=234, Percent_Identity=47.4358974358974, Blast_Score=212, Evalue=2e-56,
Organism=Escherichia coli, GI1787583, Length=312, Percent_Identity=36.5384615384615, Blast_Score=198, Evalue=4e-52,
Organism=Escherichia coli, GI87081872, Length=240, Percent_Identity=42.5, Blast_Score=187, Evalue=9e-49,
Organism=Escherichia coli, GI1789828, Length=260, Percent_Identity=35.3846153846154, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI87081858, Length=301, Percent_Identity=30.5647840531561, Blast_Score=127, Evalue=7e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 36637; Mature: 36505

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDDSRIIAKSPRFLEVLDLARRVAASSANVLITGESGTGKEVIARLIHDQSARQRKSFV
CCCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
PINCSAIPEPLLESELFGYARGAFTGAMNARQGLFEEADGGTLFLDEIGDLDLHLQAKLL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEEEECCCCCCHHHHHHHH
RVLQEKKVKRVGENHYRPLNLRIVAATHNDLEGDVQEKRFREDLYFRLKVVSIKIPPLRE
HHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHEEEEEEEEECCCCHH
RTEDILPLAHHFLDKFTRRYQMPGKKWNRDVEDFLLTRPWTGNVRELENTIERAVVLSPV
HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
DHIPLKVLQDDLQVRECSLDQIFEKMHQMQGRFLSLEELTRAYIEYVLKSNRGAREKSSR
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHCCCCCCCCCCC
DLGIDRKTLYRKTHAPLQ
CCCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
TDDSRIIAKSPRFLEVLDLARRVAASSANVLITGESGTGKEVIARLIHDQSARQRKSFV
CCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
PINCSAIPEPLLESELFGYARGAFTGAMNARQGLFEEADGGTLFLDEIGDLDLHLQAKLL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEEEECCCCCCHHHHHHHH
RVLQEKKVKRVGENHYRPLNLRIVAATHNDLEGDVQEKRFREDLYFRLKVVSIKIPPLRE
HHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHEEEEEEEEECCCCHH
RTEDILPLAHHFLDKFTRRYQMPGKKWNRDVEDFLLTRPWTGNVRELENTIERAVVLSPV
HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
DHIPLKVLQDDLQVRECSLDQIFEKMHQMQGRFLSLEELTRAYIEYVLKSNRGAREKSSR
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHCCCCCCCCCCC
DLGIDRKTLYRKTHAPLQ
CCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]