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The map label for this gene is rfaF [H]

Identifier: 42523011

GI number: 42523011

Start: 1423734

End: 1424825

Strand: Direct

Name: rfaF [H]

Synonym: Bd1504

Alternate gene names: 42523011

Gene position: 1423734-1424825 (Clockwise)

Preceding gene: 42523010

Following gene: 42523014

Centisome position: 37.64

GC content: 52.56

Gene sequence:

>1092_bases
ATGCCCTTGAATCTTGTTGTGCAAACCGCCTTTCTGGGCGATCTACTGCTCTCAATCCCGCTCCTTAAAAAATGCCGGGC
GTTGTGGCCTGACCACAAGCTGGGACTGGTTTGCCGTAAAGGGCTGGGCGACTTCTTTGTCAAAGCCGGTATCGTTGATC
ACGTCTATGAAATCGAAAAGGGCAAGAAAGACACCTATGCCCGTATCATTGAATCCCTGCGATCTGAAACTGTGGATCAT
TTGATTTCGCCGCATGAATCCATGCGCACGGTTTTGTTCTGCGCGCAGATCAAGGCCGCTCATAAAATCTCTTATAAAAA
CGCCTGGAGCTTTCTGGCATTCCAAACCCGGGTAAAACGCGACGTGCGTCTGCCGGATGCGATGAGACAGCTTAGTCTTT
TGGCGCCGTTTGATCCTGAATTGAAAAAGAACATCGAAGACTATGTCACCCGGGCAAAACCTTATTTGCCGGCGGCGCAT
GGACTTTTGCCAGCGCCTCCAGAGTGGGCGTCCATGAGTCAGCGCGAAAAAGTGCTGGCGCATTCGGAATTGTTTCAGCA
GTTAAAAACCAAGTTCAATCTTCAGGGGTTTGAAGACGGCAAAGCCGTTTTGATCTTCCCGGGCAGCGTGTGGGCAACCA
AGCGCTGGACAGAAGAGGGCTTTATCGGCGTGGGCAAGGCTCTGAAAGAACAAGGCTATGAAGTCTATGTGATGGGTGGT
CCTGGGGAAGAAACCCTGTCAGAACGAGTGGCGGCGGGCATTCCGGGGTCGGCGTCATTGGCTGGAAAAACCAAGATCAT
CGAGTCCGCTCAGTTGATTGCCCGCGCGGCTTTGTTAGTTGGAAACGACAGCGCTTCCACGCATTTGGCAGCGGTGTGTG
AAACACCTTTGATTGCGGTGTTTGGTCCGACGATTTTGGAATTTGGCTATCGCCCGTGGTCAGCACAATCTTATGTCGTC
CAGAAAGAGGACCTGCGCTGTCGACCTTGCGGCAAGCATGGCCACAAGGTCTGTCCGATCAAAACCCATGTGTGCATGAA
GGACATCCCGGCAGAGGAAGTCCTTCGCACCGCCGGGTTTATTCTTCGTTAG

Upstream 100 bases:

>100_bases
TTTAAGCTTTTGACAAAAAGCCCCTGCAGTCCGTGCTGGAAGAGGACTTGTGAAAAGGCCATTATGTGCTACGATCAGGT
CTCGTTAGAGGAAGTTATTG

Downstream 100 bases:

>100_bases
TGTATTCCTTCACATTGATGCCGTACTTGCGGATCTTGCGCAGCAGGGTGTTCTTCGGAATATTCGCCTGCGCCACGGTC
TGATTGATACGGCCGTTGTT

Product: ADP-heptose:LPS heptosyltransferase II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MPLNLVVQTAFLGDLLLSIPLLKKCRALWPDHKLGLVCRKGLGDFFVKAGIVDHVYEIEKGKKDTYARIIESLRSETVDH
LISPHESMRTVLFCAQIKAAHKISYKNAWSFLAFQTRVKRDVRLPDAMRQLSLLAPFDPELKKNIEDYVTRAKPYLPAAH
GLLPAPPEWASMSQREKVLAHSELFQQLKTKFNLQGFEDGKAVLIFPGSVWATKRWTEEGFIGVGKALKEQGYEVYVMGG
PGEETLSERVAAGIPGSASLAGKTKIIESAQLIARAALLVGNDSASTHLAAVCETPLIAVFGPTILEFGYRPWSAQSYVV
QKEDLRCRPCGKHGHKVCPIKTHVCMKDIPAEEVLRTAGFILR

Sequences:

>Translated_363_residues
MPLNLVVQTAFLGDLLLSIPLLKKCRALWPDHKLGLVCRKGLGDFFVKAGIVDHVYEIEKGKKDTYARIIESLRSETVDH
LISPHESMRTVLFCAQIKAAHKISYKNAWSFLAFQTRVKRDVRLPDAMRQLSLLAPFDPELKKNIEDYVTRAKPYLPAAH
GLLPAPPEWASMSQREKVLAHSELFQQLKTKFNLQGFEDGKAVLIFPGSVWATKRWTEEGFIGVGKALKEQGYEVYVMGG
PGEETLSERVAAGIPGSASLAGKTKIIESAQLIARAALLVGNDSASTHLAAVCETPLIAVFGPTILEFGYRPWSAQSYVV
QKEDLRCRPCGKHGHKVCPIKTHVCMKDIPAEEVLRTAGFILR
>Mature_362_residues
PLNLVVQTAFLGDLLLSIPLLKKCRALWPDHKLGLVCRKGLGDFFVKAGIVDHVYEIEKGKKDTYARIIESLRSETVDHL
ISPHESMRTVLFCAQIKAAHKISYKNAWSFLAFQTRVKRDVRLPDAMRQLSLLAPFDPELKKNIEDYVTRAKPYLPAAHG
LLPAPPEWASMSQREKVLAHSELFQQLKTKFNLQGFEDGKAVLIFPGSVWATKRWTEEGFIGVGKALKEQGYEVYVMGGP
GEETLSERVAAGIPGSASLAGKTKIIESAQLIARAALLVGNDSASTHLAAVCETPLIAVFGPTILEFGYRPWSAQSYVVQ
KEDLRCRPCGKHGHKVCPIKTHVCMKDIPAEEVLRTAGFILR

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=326, Percent_Identity=25.4601226993865, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 40285; Mature: 40154

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLNLVVQTAFLGDLLLSIPLLKKCRALWPDHKLGLVCRKGLGDFFVKAGIVDHVYEIEK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHC
GKKDTYARIIESLRSETVDHLISPHESMRTVLFCAQIKAAHKISYKNAWSFLAFQTRVKR
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVRLPDAMRQLSLLAPFDPELKKNIEDYVTRAKPYLPAAHGLLPAPPEWASMSQREKVLA
HCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHH
HSELFQQLKTKFNLQGFEDGKAVLIFPGSVWATKRWTEEGFIGVGKALKEQGYEVYVMGG
HHHHHHHHHHHCCCCCCCCCCEEEEECCCEECCCCCCCCCCHHHHHHHHHCCCEEEEECC
PGEETLSERVAAGIPGSASLAGKTKIIESAQLIARAALLVGNDSASTHLAAVCETPLIAV
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHH
FGPTILEFGYRPWSAQSYVVQKEDLRCRPCGKHGHKVCPIKTHVCMKDIPAEEVLRTAGF
HCHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCHHHHHHHCCCHHHHHHHHHH
ILR
HCC
>Mature Secondary Structure 
PLNLVVQTAFLGDLLLSIPLLKKCRALWPDHKLGLVCRKGLGDFFVKAGIVDHVYEIEK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHC
GKKDTYARIIESLRSETVDHLISPHESMRTVLFCAQIKAAHKISYKNAWSFLAFQTRVKR
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVRLPDAMRQLSLLAPFDPELKKNIEDYVTRAKPYLPAAHGLLPAPPEWASMSQREKVLA
HCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHH
HSELFQQLKTKFNLQGFEDGKAVLIFPGSVWATKRWTEEGFIGVGKALKEQGYEVYVMGG
HHHHHHHHHHHCCCCCCCCCCEEEEECCCEECCCCCCCCCCHHHHHHHHHCCCEEEEECC
PGEETLSERVAAGIPGSASLAGKTKIIESAQLIARAALLVGNDSASTHLAAVCETPLIAV
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHH
FGPTILEFGYRPWSAQSYVVQKEDLRCRPCGKHGHKVCPIKTHVCMKDIPAEEVLRTAGF
HCHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCHHHHHHHCCCHHHHHHHHHH
ILR
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1732225; 1447141; 8041620; 9278503 [H]