| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42523008
Identifier: 42523008
GI number: 42523008
Start: 1420286
End: 1421422
Strand: Direct
Name: 42523008
Synonym: Bd1501
Alternate gene names: NA
Gene position: 1420286-1421422 (Clockwise)
Preceding gene: 42523007
Following gene: 42523010
Centisome position: 37.54
GC content: 49.96
Gene sequence:
>1137_bases ATGCTTCTTGGCGTATTCGTTTCTTTGCTTTTGGTTTCCTGTTCGACTTCATTTTTGAAGTACGAAAAAGCTGACCAGCT GAAAAAAAACGAGGAGTTCGAAGGAGCGGTGACGATTGTAAAGCCGCAGTCGGAAAGCCCACCAGAGACAGCGCCTGCAG AGCCGGCCCAAGCAGGCAAAGACACCAAAGCTGCTTCCCAACCAGCTACGAAATCCACGGCCAAAACAACAGCCAAAAGT TCCACTCAAACAACTGACAAGACCGCTGCCAAAGCGCCTGTGAAGGCGTCGGAAAAAACAGCCGTTGCTCCCGCAGTAAA AGCTCCCTCCAAGGCATCCAAGTCTGCTGCCAAAACAGAAGCCGCGACGGCACAGGCCCCGGTGCGTCAGCCTGATATCG AAGATTCAGAAGGGTTCAACGGTCGCCGTCCGGTGAATGACCCTTTCCGCGTGGGTGAAGAAGTGGTGCACGACGTGCAT TATTTCAAAGTCTCTGCCGGGGAGCTTCGCATGAAAGTGGAGCCCTTTGCCATGGTCAACAACCGCAAGTCCTACACTTT CGCGGTGGAAATCCGCACCAGTCCTCTGTTCAGTTCCTTCTATAGCGTTGAAGACCGTGTAGAGACCTTTGTCGATTACG AAGACCTGGTGCCGCGTGTGTTTCAATTGCACGTGAAGGAATCCGGTCAGTTGCGTGAAGCCAAGATGCTCTTTGATGTC GAGAAAAACACGGCGACCTTCTGGGAAAAGAAGGTGACCAAGGACCACGGCGAAGAAGAGAAAAAGCAGAACTGGGAAAT TCTGCCGTACACCCAAAACGTTTACAGCGCGATTTACTATATGCGAAATTTCAAATGGGAAACGGGCAAAGAGTATTCCT TCCGCGTCGGTAACGACAACGAGAATCTTGTGTTTTCCGGAAAAGCCCTGCGCCGTGAAGTCCTGAACACCAAGCTGGGA CCCATTAAAGCCATCGTGGTTCAGCCTAAAATCACTCTCAAAGGCAAATTGAACCCGATCGGGGACAATTTCATCTGGTT GTCGGATGATGATCGCAAGTATATCTTGAGAATTGAATCCAAAATCAAAATCGGAACATTGGTTTCTGAAGTCGTAGAAA TTAAACCCGGCAAGTAA
Upstream 100 bases:
>100_bases CACAAAGCTATTGCGACAAGTTGGAAGAGATCGTCAGAAAGCACCCGGAACAATGGATGTGGGTGCATCGACGGTGGAAG GATTTCCGGTGAACTTTAAA
Downstream 100 bases:
>100_bases TTAGCGTTTGCGGTCCGCTTCGAGTCTTTGGGCCGCCAGGGTTTCTATTTCTTTTGCTAAGAATAGATTCTGAGACAGAA CTTGATAGAAGTTGTTTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MLLGVFVSLLLVSCSTSFLKYEKADQLKKNEEFEGAVTIVKPQSESPPETAPAEPAQAGKDTKAASQPATKSTAKTTAKS STQTTDKTAAKAPVKASEKTAVAPAVKAPSKASKSAAKTEAATAQAPVRQPDIEDSEGFNGRRPVNDPFRVGEEVVHDVH YFKVSAGELRMKVEPFAMVNNRKSYTFAVEIRTSPLFSSFYSVEDRVETFVDYEDLVPRVFQLHVKESGQLREAKMLFDV EKNTATFWEKKVTKDHGEEEKKQNWEILPYTQNVYSAIYYMRNFKWETGKEYSFRVGNDNENLVFSGKALRREVLNTKLG PIKAIVVQPKITLKGKLNPIGDNFIWLSDDDRKYILRIESKIKIGTLVSEVVEIKPGK
Sequences:
>Translated_378_residues MLLGVFVSLLLVSCSTSFLKYEKADQLKKNEEFEGAVTIVKPQSESPPETAPAEPAQAGKDTKAASQPATKSTAKTTAKS STQTTDKTAAKAPVKASEKTAVAPAVKAPSKASKSAAKTEAATAQAPVRQPDIEDSEGFNGRRPVNDPFRVGEEVVHDVH YFKVSAGELRMKVEPFAMVNNRKSYTFAVEIRTSPLFSSFYSVEDRVETFVDYEDLVPRVFQLHVKESGQLREAKMLFDV EKNTATFWEKKVTKDHGEEEKKQNWEILPYTQNVYSAIYYMRNFKWETGKEYSFRVGNDNENLVFSGKALRREVLNTKLG PIKAIVVQPKITLKGKLNPIGDNFIWLSDDDRKYILRIESKIKIGTLVSEVVEIKPGK >Mature_378_residues MLLGVFVSLLLVSCSTSFLKYEKADQLKKNEEFEGAVTIVKPQSESPPETAPAEPAQAGKDTKAASQPATKSTAKTTAKS STQTTDKTAAKAPVKASEKTAVAPAVKAPSKASKSAAKTEAATAQAPVRQPDIEDSEGFNGRRPVNDPFRVGEEVVHDVH YFKVSAGELRMKVEPFAMVNNRKSYTFAVEIRTSPLFSSFYSVEDRVETFVDYEDLVPRVFQLHVKESGQLREAKMLFDV EKNTATFWEKKVTKDHGEEEKKQNWEILPYTQNVYSAIYYMRNFKWETGKEYSFRVGNDNENLVFSGKALRREVLNTKLG PIKAIVVQPKITLKGKLNPIGDNFIWLSDDDRKYILRIESKIKIGTLVSEVVEIKPGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42255; Mature: 42255
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLGVFVSLLLVSCSTSFLKYEKADQLKKNEEFEGAVTIVKPQSESPPETAPAEPAQAGK CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCC DTKAASQPATKSTAKTTAKSSTQTTDKTAAKAPVKASEKTAVAPAVKAPSKASKSAAKTE CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH AATAQAPVRQPDIEDSEGFNGRRPVNDPFRVGEEVVHDVHYFKVSAGELRMKVEPFAMVN HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCEEEEECCEEEEC NRKSYTFAVEIRTSPLFSSFYSVEDRVETFVDYEDLVPRVFQLHVKESGQLREAKMLFDV CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHEEEEE EKNTATFWEKKVTKDHGEEEKKQNWEILPYTQNVYSAIYYMRNFKWETGKEYSFRVGNDN CCCHHHHHHHHHHHHCCCHHHHCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCC ENLVFSGKALRREVLNTKLGPIKAIVVQPKITLKGKLNPIGDNFIWLSDDDRKYILRIES CCEEEECHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCCCEEEECCCCCEEEEEEEC KIKIGTLVSEVVEIKPGK CCHHHHHHHHHHHCCCCC >Mature Secondary Structure MLLGVFVSLLLVSCSTSFLKYEKADQLKKNEEFEGAVTIVKPQSESPPETAPAEPAQAGK CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCC DTKAASQPATKSTAKTTAKSSTQTTDKTAAKAPVKASEKTAVAPAVKAPSKASKSAAKTE CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH AATAQAPVRQPDIEDSEGFNGRRPVNDPFRVGEEVVHDVHYFKVSAGELRMKVEPFAMVN HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCEEEEECCEEEEC NRKSYTFAVEIRTSPLFSSFYSVEDRVETFVDYEDLVPRVFQLHVKESGQLREAKMLFDV CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHEEEEE EKNTATFWEKKVTKDHGEEEKKQNWEILPYTQNVYSAIYYMRNFKWETGKEYSFRVGNDN CCCHHHHHHHHHHHHCCCHHHHCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCC ENLVFSGKALRREVLNTKLGPIKAIVVQPKITLKGKLNPIGDNFIWLSDDDRKYILRIES CCEEEECHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCCCEEEECCCCCEEEEEEEC KIKIGTLVSEVVEIKPGK CCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA