| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is yaeT [H]
Identifier: 42523001
GI number: 42523001
Start: 1412463
End: 1414862
Strand: Direct
Name: yaeT [H]
Synonym: Bd1493
Alternate gene names: 42523001
Gene position: 1412463-1414862 (Clockwise)
Preceding gene: 42523000
Following gene: 42523002
Centisome position: 37.34
GC content: 48.96
Gene sequence:
>2400_bases TTGGGAACTTTGAGTAAGCTTCTTTGTGCACTGTTAATCACATTCATGACTTCGACGGTGGTGGCCCAGCCTGCCAAAAA GAAAAACGCCAAGGCCAAAGCTCCTGTTGCGGCGGCGGAGGCATCGGATGCCACATCCGGTTTGATCGTTAAAAACATCG AAGTTGCCGGCAATCGTAAAATTGAAAAAGACGCCATTCTGACCAAGATCGTCACCAAGGTTGGAGAGTCGTATTCAGCT CAGCATATTCGCGAAGATGTGCAGGCGCTGTTCAATATGGGTTTCTTCAATGACATTCAGGTGGATCGTAAAGCCACCGG CAAAGATGTCACGCTGACGTACACCGTGCTGGAAAAACCTTCTGTGGTTGAAATCACTTACGAAGGCAACAGTGAAGTAA AGTCTGAAGATATTGCGGATGCCACGGGTATTAAGCCTTATCAGCTTTTGAACATGGCCAAAGTTAAAGAAGCGGTGGAG AAAATCCAGAAGCTTTATGAAGACAAAGGTTTCTTCCTGGCCAAGATCGATTCTGAAGTTCAAGAGGTCACCAAAGACGA AACTGTCCGTCTGGTCTTTAAGATCCGTGAAAATGATAAAGTAAAAGTTAAAAAGATCACCTTCCTTGGTAACAACCATA TGGGTGACAGTTCTCTGAAAAGCAAGATGCTGACTCAAGAGGGCGGCTTCTTCTCGGGCATCAGCGGTTCCGGTCAGTAC AAGCAGGAGATGTTCGAGCGTGACGTTCAGATTCTTCGCTTCCTTTATTGGAATCAGGGTTATGTTCAGGCCAAGGTGGA TCGTCCTCAGGTGACGGTGACGCCGGATAAAAAGAACATCTATATCACCATCCGAATTGAGGAAGGTGAGCAGTACAATG TCGGCGACGTGGATTTCGCCGGTGATCTTTTGTTCCCGAAATCTGAATTGCGCGAAGTGATCAAGATCGATGACAACGGC GTCTTTGCCTACGATGTGTTGCAAAAAGACATCAGTGAGCTGACCGCAAAGTACGGGGATCTGGGTTATGCCTATGCCAA CGTGATCCCACGGACTCGTTTCAACGACAAAGAACGTCGTGTGGATCTGGTGTTTGAATTCGACAAGGGCAACAAGGTTT ACTTCGGCAAGATCAATATGGTTGGAAATTCCAAGACCCGTGACAAGGTCATCCGTCGTGAGCTTAAAGTTCATGAAGGG GAGCTGTACAACGAAACCCGCCGTCGTCAGTCTTTGGAAAACATCCAGCGTCTGGGCTTCTTTGAGGAAGTCAACTTCAA GACCTCGATTGATCCGGAACGCACAGAAGTCATGAACGTGGATATTTCCGTGAAAGAGCGTAACACCGGCCAGATCCAGT TGGGTGCGGGTTACGGAACTTCCCAGGGTTTCACATTGCAGGGCTCTATCAGTCAGGCGAATTTCCTGGGTAAAGGTCAG AATCTGGGCGCGTCCCTGAATTTGAGCAACACGGGCAGTTACTACAGTTTGTCCTTCACTGAGCCGTACTTCCGAGACAC GTTGTGGTCTTTGGGGGCGGATCTTTATCAAAGCGCGAATACTGGACGTGTGGACTATGACGAAAATCACACAGGTGGTG CGATTCGTTTGGGCCACCCGTTGGCCGAATACACGCGTGGTTTCCTAAAGTACAAATATGACGACACCAAACTGTCTAAA AAATACGACAGTGATGGCAAGCTGATCACGGATCCGGATCTGTTCCCGCTGGAATCGGCGTCTGGTGTGACCAGCTCCAT GACTGGAACTGTTGAATATGACACGCGTAATGACCGTCAGATGCCGACCAAGGGGATCTATTCCAGTGGGTCTTATGAGT ACGCTGGTCTGGGCGGAGATCTGAAGTATACTCGCGGAAATGCCAATTTCAGATACTACAAGAACCTGTTCTGGGACGTA GTGTGGCGAAATAACATCCAATATTCCCGCATCGACGGTTTGGATGGTCAGGAAGTTCCGTTCTCTGAATTGTACCTTCT GGGTGGACCTTACTCTTTGCGTGGTTATAGATCTTACCGCGTGGGTAAAATGAAGTTCTCTGAGATGATCTACAACGATC TGATCGCTGAGGGTAAGTCCGATGCTGAGGCCCGCGAAAAAGCGATGCGTTTCTACGGGGGCGTTCAACAGGCCATGTAC CAGACGGAATTACAGTTCCCTTTGGTCAAAGAAGCTGGCATCATGGGAGCTGGATTCTTCGATATCGGTGCCGCGGATGA TGTCCTAACAGACAACAACTTCTTCGCGGACGTCGGCTTCGGTATTCGCTGGTATTCACCAATTGGTGTTTTGCGCTTCG AATGGGGCTTCCCGCTGAACCGCAACCCAGCTTACCAAGACGCCACCGTCTTCGAATTCTCCATCGGGCCTAGTTTCTAA
Upstream 100 bases:
>100_bases CTGTCTGGTGGCTTTGACAGGACCTTGGTCTTAAGTTACGATTCCTTGTCTAAATTGTAAGTACTTAAAAGTCTTATAGA TTTTTAAAAAATAACGGGGA
Downstream 100 bases:
>100_bases GTCGGCCGTGCCGAGGAGGCTGGAGCGCCGGCAGGCGCGAAAGCTGGACTGACTAAATTATTTTTAAAACCTTTTAAGGA GGATTTGGAATGAAGAGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 799; Mature: 798
Protein sequence:
>799_residues MGTLSKLLCALLITFMTSTVVAQPAKKKNAKAKAPVAAAEASDATSGLIVKNIEVAGNRKIEKDAILTKIVTKVGESYSA QHIREDVQALFNMGFFNDIQVDRKATGKDVTLTYTVLEKPSVVEITYEGNSEVKSEDIADATGIKPYQLLNMAKVKEAVE KIQKLYEDKGFFLAKIDSEVQEVTKDETVRLVFKIRENDKVKVKKITFLGNNHMGDSSLKSKMLTQEGGFFSGISGSGQY KQEMFERDVQILRFLYWNQGYVQAKVDRPQVTVTPDKKNIYITIRIEEGEQYNVGDVDFAGDLLFPKSELREVIKIDDNG VFAYDVLQKDISELTAKYGDLGYAYANVIPRTRFNDKERRVDLVFEFDKGNKVYFGKINMVGNSKTRDKVIRRELKVHEG ELYNETRRRQSLENIQRLGFFEEVNFKTSIDPERTEVMNVDISVKERNTGQIQLGAGYGTSQGFTLQGSISQANFLGKGQ NLGASLNLSNTGSYYSLSFTEPYFRDTLWSLGADLYQSANTGRVDYDENHTGGAIRLGHPLAEYTRGFLKYKYDDTKLSK KYDSDGKLITDPDLFPLESASGVTSSMTGTVEYDTRNDRQMPTKGIYSSGSYEYAGLGGDLKYTRGNANFRYYKNLFWDV VWRNNIQYSRIDGLDGQEVPFSELYLLGGPYSLRGYRSYRVGKMKFSEMIYNDLIAEGKSDAEAREKAMRFYGGVQQAMY QTELQFPLVKEAGIMGAGFFDIGAADDVLTDNNFFADVGFGIRWYSPIGVLRFEWGFPLNRNPAYQDATVFEFSIGPSF
Sequences:
>Translated_799_residues MGTLSKLLCALLITFMTSTVVAQPAKKKNAKAKAPVAAAEASDATSGLIVKNIEVAGNRKIEKDAILTKIVTKVGESYSA QHIREDVQALFNMGFFNDIQVDRKATGKDVTLTYTVLEKPSVVEITYEGNSEVKSEDIADATGIKPYQLLNMAKVKEAVE KIQKLYEDKGFFLAKIDSEVQEVTKDETVRLVFKIRENDKVKVKKITFLGNNHMGDSSLKSKMLTQEGGFFSGISGSGQY KQEMFERDVQILRFLYWNQGYVQAKVDRPQVTVTPDKKNIYITIRIEEGEQYNVGDVDFAGDLLFPKSELREVIKIDDNG VFAYDVLQKDISELTAKYGDLGYAYANVIPRTRFNDKERRVDLVFEFDKGNKVYFGKINMVGNSKTRDKVIRRELKVHEG ELYNETRRRQSLENIQRLGFFEEVNFKTSIDPERTEVMNVDISVKERNTGQIQLGAGYGTSQGFTLQGSISQANFLGKGQ NLGASLNLSNTGSYYSLSFTEPYFRDTLWSLGADLYQSANTGRVDYDENHTGGAIRLGHPLAEYTRGFLKYKYDDTKLSK KYDSDGKLITDPDLFPLESASGVTSSMTGTVEYDTRNDRQMPTKGIYSSGSYEYAGLGGDLKYTRGNANFRYYKNLFWDV VWRNNIQYSRIDGLDGQEVPFSELYLLGGPYSLRGYRSYRVGKMKFSEMIYNDLIAEGKSDAEAREKAMRFYGGVQQAMY QTELQFPLVKEAGIMGAGFFDIGAADDVLTDNNFFADVGFGIRWYSPIGVLRFEWGFPLNRNPAYQDATVFEFSIGPSF >Mature_798_residues GTLSKLLCALLITFMTSTVVAQPAKKKNAKAKAPVAAAEASDATSGLIVKNIEVAGNRKIEKDAILTKIVTKVGESYSAQ HIREDVQALFNMGFFNDIQVDRKATGKDVTLTYTVLEKPSVVEITYEGNSEVKSEDIADATGIKPYQLLNMAKVKEAVEK IQKLYEDKGFFLAKIDSEVQEVTKDETVRLVFKIRENDKVKVKKITFLGNNHMGDSSLKSKMLTQEGGFFSGISGSGQYK QEMFERDVQILRFLYWNQGYVQAKVDRPQVTVTPDKKNIYITIRIEEGEQYNVGDVDFAGDLLFPKSELREVIKIDDNGV FAYDVLQKDISELTAKYGDLGYAYANVIPRTRFNDKERRVDLVFEFDKGNKVYFGKINMVGNSKTRDKVIRRELKVHEGE LYNETRRRQSLENIQRLGFFEEVNFKTSIDPERTEVMNVDISVKERNTGQIQLGAGYGTSQGFTLQGSISQANFLGKGQN LGASLNLSNTGSYYSLSFTEPYFRDTLWSLGADLYQSANTGRVDYDENHTGGAIRLGHPLAEYTRGFLKYKYDDTKLSKK YDSDGKLITDPDLFPLESASGVTSSMTGTVEYDTRNDRQMPTKGIYSSGSYEYAGLGGDLKYTRGNANFRYYKNLFWDVV WRNNIQYSRIDGLDGQEVPFSELYLLGGPYSLRGYRSYRVGKMKFSEMIYNDLIAEGKSDAEAREKAMRFYGGVQQAMYQ TELQFPLVKEAGIMGAGFFDIGAADDVLTDNNFFADVGFGIRWYSPIGVLRFEWGFPLNRNPAYQDATVFEFSIGPSF
Specific function: Involved in the assembly of outer membrane proteins. Does not play a direct role in the export of outer membrane lipids [H]
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Escherichia coli, GI1786374, Length=835, Percent_Identity=27.0658682634731, Blast_Score=266, Evalue=5e-72,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 90085; Mature: 89953
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTLSKLLCALLITFMTSTVVAQPAKKKNAKAKAPVAAAEASDATSGLIVKNIEVAGNRK CCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCC IEKDAILTKIVTKVGESYSAQHIREDVQALFNMGFFNDIQVDRKATGKDVTLTYTVLEKP CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEECCC SVVEITYEGNSEVKSEDIADATGIKPYQLLNMAKVKEAVEKIQKLYEDKGFFLAKIDSEV CEEEEEECCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHH QEVTKDETVRLVFKIRENDKVKVKKITFLGNNHMGDSSLKSKMLTQEGGFFSGISGSGQY HHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCHH KQEMFERDVQILRFLYWNQGYVQAKVDRPQVTVTPDKKNIYITIRIEEGEQYNVGDVDFA HHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCC GDLLFPKSELREVIKIDDNGVFAYDVLQKDISELTAKYGDLGYAYANVIPRTRFNDKERR CCCCCCHHHHHHHEEECCCCEEEHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCE VDLVFEFDKGNKVYFGKINMVGNSKTRDKVIRRELKVHEGELYNETRRRQSLENIQRLGF EEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC FEEVNFKTSIDPERTEVMNVDISVKERNTGQIQLGAGYGTSQGFTLQGSISQANFLGKGQ HHHCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCEEEECCCCCCHHCCCCC NLGASLNLSNTGSYYSLSFTEPYFRDTLWSLGADLYQSANTGRVDYDENHTGGAIRLGHP CCCEEEEECCCCCEEEEECCCCHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCEEEECCC LAEYTRGFLKYKYDDTKLSKKYDSDGKLITDPDLFPLESASGVTSSMTGTVEYDTRNDRQ HHHHHHHHEEEEECCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCC MPTKGIYSSGSYEYAGLGGDLKYTRGNANFRYYKNLFWDVVWRNNIQYSRIDGLDGQEVP CCCCCCCCCCCEEEEECCCCEEEECCCCCEEEEHHHHEEEEECCCCCEEEECCCCCCCCC FSELYLLGGPYSLRGYRSYRVGKMKFSEMIYNDLIAEGKSDAEAREKAMRFYGGVQQAMY HHHEEEECCCCEECCCCCEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH QTELQFPLVKEAGIMGAGFFDIGAADDVLTDNNFFADVGFGIRWYSPIGVLRFEWGFPLN HHHCCCCCHHHCCCEECCCEECCCCCCEECCCCEEEECCCCEEEECCCEEEEEECCCCCC RNPAYQDATVFEFSIGPSF CCCCCCCCEEEEEECCCCC >Mature Secondary Structure GTLSKLLCALLITFMTSTVVAQPAKKKNAKAKAPVAAAEASDATSGLIVKNIEVAGNRK CHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCC IEKDAILTKIVTKVGESYSAQHIREDVQALFNMGFFNDIQVDRKATGKDVTLTYTVLEKP CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEECCC SVVEITYEGNSEVKSEDIADATGIKPYQLLNMAKVKEAVEKIQKLYEDKGFFLAKIDSEV CEEEEEECCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHH QEVTKDETVRLVFKIRENDKVKVKKITFLGNNHMGDSSLKSKMLTQEGGFFSGISGSGQY HHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCHH KQEMFERDVQILRFLYWNQGYVQAKVDRPQVTVTPDKKNIYITIRIEEGEQYNVGDVDFA HHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCC GDLLFPKSELREVIKIDDNGVFAYDVLQKDISELTAKYGDLGYAYANVIPRTRFNDKERR CCCCCCHHHHHHHEEECCCCEEEHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCE VDLVFEFDKGNKVYFGKINMVGNSKTRDKVIRRELKVHEGELYNETRRRQSLENIQRLGF EEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC FEEVNFKTSIDPERTEVMNVDISVKERNTGQIQLGAGYGTSQGFTLQGSISQANFLGKGQ HHHCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCEEEECCCCCCHHCCCCC NLGASLNLSNTGSYYSLSFTEPYFRDTLWSLGADLYQSANTGRVDYDENHTGGAIRLGHP CCCEEEEECCCCCEEEEECCCCHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCEEEECCC LAEYTRGFLKYKYDDTKLSKKYDSDGKLITDPDLFPLESASGVTSSMTGTVEYDTRNDRQ HHHHHHHHEEEEECCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCC MPTKGIYSSGSYEYAGLGGDLKYTRGNANFRYYKNLFWDVVWRNNIQYSRIDGLDGQEVP CCCCCCCCCCCEEEEECCCCEEEECCCCCEEEEHHHHEEEEECCCCCEEEECCCCCCCCC FSELYLLGGPYSLRGYRSYRVGKMKFSEMIYNDLIAEGKSDAEAREKAMRFYGGVQQAMY HHHEEEECCCCEECCCCCEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH QTELQFPLVKEAGIMGAGFFDIGAADDVLTDNNFFADVGFGIRWYSPIGVLRFEWGFPLN HHHCCCCCHHHCCCEECCCEECCCCCCEECCCCEEEECCCCEEEECCCEEEEEECCCCCC RNPAYQDATVFEFSIGPSF CCCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA