Click here to switch to the map view.

The map label for this gene is glpQ [H]

Identifier: 42522904

GI number: 42522904

Start: 1311481

End: 1312149

Strand: Direct

Name: glpQ [H]

Synonym: Bd1385

Alternate gene names: 42522904

Gene position: 1311481-1312149 (Clockwise)

Preceding gene: 42522900

Following gene: 42522905

Centisome position: 34.67

GC content: 54.41

Gene sequence:

>669_bases
ATGATGGGACATCGCGGGGCTCGGGACCGGGCACCAGAAAACACTTTGCGTTCTTTCGAGTTTGCTTTGCAGTCCGGCGT
TGCCGCCGTGGAATTCGACATTCACGAATCCCGGGACGGGGTGTGGGTGGTTCACCATGACGACACTTTGGATCGCACCA
CAACCAGCACGGGACGGGTGGGTGCCTGCACTTGGGCGGAACTTTCCCAAGTGCGAACCAATGAGGGGGACTCTCTGCCG
CGTCTGGAGCAGGTGCTGGAACTTTTTAAAAGGGCCCCAACCCAGTTGCAGATTGAAGTGAAATCCCCGGGGAATTTCCG
TGCCCTGGCGGATCTGTTGGAAAAGAACTTTCCGGCAGAAAGACTGACCGTCATTTCTTTTAATCATCGCTGGCTGCGTG
AATTCCGGGATCATTCTTCAATAAAAACAACTTGCCTGCTGTTTGGTTTGCCTTTGAATCCGGTGCAGATCATGGAAAGC
GCCAAGGCCCAGGGAATTTCGCTCAGTGTGAACTGGATTGACCAGCAGTTGGTGGCTGAATGCCATGCGGCGGGATTTTC
GGTCACGGCTTGGAATGCCAATGACGAAGCCACTTATCAGAAAATGAAGCAGCTGGGCGTGGACTGTCTGGGGACAGATG
TTCCATTTACCGCCGCGTCGTGGGTCTAA

Upstream 100 bases:

>100_bases
GGAGGGTTGTGCCATGGGGCGTAGCATAGGGGTTTTCCCCAGTGAAAGCGAGAAAAGATTGTCCCGATAGCGGTTTTTTT
GCTTCAATGAATCCATGAAA

Downstream 100 bases:

>100_bases
GAGTAGAGCTTTCCTTCAATTAGAACCTGTGCTCTAGTGATTCTCATACAATTTATGGGGATCCAATGACCAAGAAAAAA
GCGGCCAAATCCAAGTCACC

Product: putative phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MMGHRGARDRAPENTLRSFEFALQSGVAAVEFDIHESRDGVWVVHHDDTLDRTTTSTGRVGACTWAELSQVRTNEGDSLP
RLEQVLELFKRAPTQLQIEVKSPGNFRALADLLEKNFPAERLTVISFNHRWLREFRDHSSIKTTCLLFGLPLNPVQIMES
AKAQGISLSVNWIDQQLVAECHAAGFSVTAWNANDEATYQKMKQLGVDCLGTDVPFTAASWV

Sequences:

>Translated_222_residues
MMGHRGARDRAPENTLRSFEFALQSGVAAVEFDIHESRDGVWVVHHDDTLDRTTTSTGRVGACTWAELSQVRTNEGDSLP
RLEQVLELFKRAPTQLQIEVKSPGNFRALADLLEKNFPAERLTVISFNHRWLREFRDHSSIKTTCLLFGLPLNPVQIMES
AKAQGISLSVNWIDQQLVAECHAAGFSVTAWNANDEATYQKMKQLGVDCLGTDVPFTAASWV
>Mature_222_residues
MMGHRGARDRAPENTLRSFEFALQSGVAAVEFDIHESRDGVWVVHHDDTLDRTTTSTGRVGACTWAELSQVRTNEGDSLP
RLEQVLELFKRAPTQLQIEVKSPGNFRALADLLEKNFPAERLTVISFNHRWLREFRDHSSIKTTCLLFGLPLNPVQIMES
AKAQGISLSVNWIDQQLVAECHAAGFSVTAWNANDEATYQKMKQLGVDCLGTDVPFTAASWV

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Escherichia coli, GI1789858, Length=108, Percent_Identity=35.1851851851852, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17561436, Length=254, Percent_Identity=28.3464566929134, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 24826; Mature: 24826

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGHRGARDRAPENTLRSFEFALQSGVAAVEFDIHESRDGVWVVHHDDTLDRTTTSTGRV
CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCC
GACTWAELSQVRTNEGDSLPRLEQVLELFKRAPTQLQIEVKSPGNFRALADLLEKNFPAE
CEEHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCHH
RLTVISFNHRWLREFRDHSSIKTTCLLFGLPLNPVQIMESAKAQGISLSVNWIDQQLVAE
HEEEEEECHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHCCCCEEEEEHHHHHHHHHH
CHAAGFSVTAWNANDEATYQKMKQLGVDCLGTDVPFTAASWV
HHHCCCEEEEECCCCHHHHHHHHHHCCEEECCCCCCCCCCCC
>Mature Secondary Structure
MMGHRGARDRAPENTLRSFEFALQSGVAAVEFDIHESRDGVWVVHHDDTLDRTTTSTGRV
CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCC
GACTWAELSQVRTNEGDSLPRLEQVLELFKRAPTQLQIEVKSPGNFRALADLLEKNFPAE
CEEHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCHH
RLTVISFNHRWLREFRDHSSIKTTCLLFGLPLNPVQIMESAKAQGISLSVNWIDQQLVAE
HEEEEEECHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHCCCCEEEEEHHHHHHHHHH
CHAAGFSVTAWNANDEATYQKMKQLGVDCLGTDVPFTAASWV
HHHCCCEEEEECCCCHHHHHHHHHHCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]