Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

Click here to switch to the map view.

The map label for this gene is 42522861

Identifier: 42522861

GI number: 42522861

Start: 1269236

End: 1270909

Strand: Direct

Name: 42522861

Synonym: Bd1341

Alternate gene names: NA

Gene position: 1269236-1270909 (Clockwise)

Preceding gene: 42522860

Following gene: 42522869

Centisome position: 33.55

GC content: 49.7

Gene sequence:

>1674_bases
ATGAAGGTTCTTGGTTTTATCTTAGCCCTTTTCGTCGCGGCATCCGCATTCGGTCGTCTTTCGGACGGCAAAGCCACATT
CGTCGTGAAAGACGGAAAGATCGTCGGCACCATTCAAAAAGGTTTTCATTTCAATAAGGAAGCTCCCGCGGCTTTTGCCA
TGAAGGGCGTAGAGATCGCGCCTCTTGTTAAAGAGGAATCTCAGCTGGTTTTTGCTATGCCGACAAAAGAAAACGAAGCC
TTTGAGCTTGGCTTCTATGTCTGCGACGACAAAAAAACCGTGTGCGAAGAACACAAGATCACTTACGTGATTTCCGGCGG
GAAGCTAAAGCCTGCAAGCGAAGTCAAAAAAGCCGAGGTTGCAAAGCCGGAAGTGAAAGCCACCACGGGCAAAGTTCACA
AGAATAGCCATGGTTTTATCGAAAACGATCTGGAAGCTGCCAAAGTTTTGGCGGCAAAGTCCAAAAAAAATCTGCTGGTT
GATTACGGGGCCCCTTGGTGTCCGGCCTGTGTTCGTCTTGAAACGGAAGTCTTTGGCACCAAGGCTTTTAAAAACGTCAC
GAAGGATTTTATCCTGGTCGCTTTGAATGCAGACATGAGCGCCAATAAACCGTTCGGAAAACAGTACAATATTAAAGCGA
TTCCAACAGTGTTGATCTTGAAACCTGATGGCACCGAACTTTATCGCGCCTTGGATTTTGCACCGGCGGATGTTTACGCC
AAACGCATCAAAGACGCGAAAAAGAACCTTCAGTCGACTGCGGATCTTGAAAAGCTGGCACAAGCCGGTGATCAAAAAGC
CATCGAGGCTTTGGCTGTCAAAGCTTACAATGCCCTCGATATGGAAACGGCCGTGAAGTGGTATCGTCAGATTGATTCCA
AATCCGATCGTTTTGCCTCTGCAGAAACGCAGTGGGCTTCTCAGCAGGCCCGTGCGGAAAAAAAGTCGGAAGAATATCTG
GCCATCCTGAAAAAGTGGGCCGACCTTAAACCGCAGAGTTTCACCAGCGTCACGGCCACCAACGAATGGGCGGAATTCCT
GAAAAGTGAAAAGAAGGATCTGCCGGCGGATTTGAAAGAGCGCCTGAAAGCCAACAGCGAGTTTTTGGAAAAACTGACCA
AGTCGAAAGCCGACACCGTCAAATGGGTGGAGTCCTGGGAGGTCAGTCCGATGGCTCCGGTGGAAAGGGCCGAGGCGCTT
TCCATGTGGAAGGTGTCCGCCGAGGCCCTGGGGCAAAAAGAAGAGGTCGTCAGGATTCAACAGGAGCTGCAGAATGAAGT
GCGTTCGTTGAAGCTTTCTGAGAATCGTCCGGGGGAGGTGATGGCAACGCTGTTTTACTTCCGTCAGGCGGGGCTTCCGG
AACTTGAGGAATCGTGGCTGTTGAAACTTGAAAAGGCGAATCCTCACAGCTATGTCCCGCACATGAAGCTTGCAAGCTAC
TATGTGCGCAACAAGGCCTATGAAAAAGCCCTGCCCCAGGCAAAGCTTGCAGTGGAGCTGGGAGAAGACCTGCGTCTTCA
CAACTTGAAGACCCTGGCAGAGATTCAGAAAGAGCTGAAACAAAAAGATGAAGCCAAAAAGACCATCGAGATCGCTTTGG
CTCATCCCCAAGTGAAAGAAGAGCGCTTCAAGGATGTTCTAAAATCCCTGGAGCAGATGAAAAAAGATCTTTAG

Upstream 100 bases:

>100_bases
GGTGCCTGGTGACTTTTTACATCTACGCCGCAGCATGAACGGTGTAGGCATTGTTATCTGTCTTCACCGTGATAGGGTTC
TAAGATATTCAGGAGGACTT

Downstream 100 bases:

>100_bases
TCCTTTAAAAGGAAAGTGGCCTTACCCAGGCTTTTTCCGTTTGCGAAAATCTCAACGACATGGGAGCCCGGATAAAGCAC
CCGTGTCGTCACCGGGCGGA

Product: putative disulphide-isomerase

Products: NA

Alternate protein names: Disulphide-Isomerase; Disulphide-Isomerase Oxidoreductase Protein; Thiol-Disulfide Isomerase And Thioredoxin; Lipoprotein

Number of amino acids: Translated: 557; Mature: 557

Protein sequence:

>557_residues
MKVLGFILALFVAASAFGRLSDGKATFVVKDGKIVGTIQKGFHFNKEAPAAFAMKGVEIAPLVKEESQLVFAMPTKENEA
FELGFYVCDDKKTVCEEHKITYVISGGKLKPASEVKKAEVAKPEVKATTGKVHKNSHGFIENDLEAAKVLAAKSKKNLLV
DYGAPWCPACVRLETEVFGTKAFKNVTKDFILVALNADMSANKPFGKQYNIKAIPTVLILKPDGTELYRALDFAPADVYA
KRIKDAKKNLQSTADLEKLAQAGDQKAIEALAVKAYNALDMETAVKWYRQIDSKSDRFASAETQWASQQARAEKKSEEYL
AILKKWADLKPQSFTSVTATNEWAEFLKSEKKDLPADLKERLKANSEFLEKLTKSKADTVKWVESWEVSPMAPVERAEAL
SMWKVSAEALGQKEEVVRIQQELQNEVRSLKLSENRPGEVMATLFYFRQAGLPELEESWLLKLEKANPHSYVPHMKLASY
YVRNKAYEKALPQAKLAVELGEDLRLHNLKTLAEIQKELKQKDEAKKTIEIALAHPQVKEERFKDVLKSLEQMKKDL

Sequences:

>Translated_557_residues
MKVLGFILALFVAASAFGRLSDGKATFVVKDGKIVGTIQKGFHFNKEAPAAFAMKGVEIAPLVKEESQLVFAMPTKENEA
FELGFYVCDDKKTVCEEHKITYVISGGKLKPASEVKKAEVAKPEVKATTGKVHKNSHGFIENDLEAAKVLAAKSKKNLLV
DYGAPWCPACVRLETEVFGTKAFKNVTKDFILVALNADMSANKPFGKQYNIKAIPTVLILKPDGTELYRALDFAPADVYA
KRIKDAKKNLQSTADLEKLAQAGDQKAIEALAVKAYNALDMETAVKWYRQIDSKSDRFASAETQWASQQARAEKKSEEYL
AILKKWADLKPQSFTSVTATNEWAEFLKSEKKDLPADLKERLKANSEFLEKLTKSKADTVKWVESWEVSPMAPVERAEAL
SMWKVSAEALGQKEEVVRIQQELQNEVRSLKLSENRPGEVMATLFYFRQAGLPELEESWLLKLEKANPHSYVPHMKLASY
YVRNKAYEKALPQAKLAVELGEDLRLHNLKTLAEIQKELKQKDEAKKTIEIALAHPQVKEERFKDVLKSLEQMKKDL
>Mature_557_residues
MKVLGFILALFVAASAFGRLSDGKATFVVKDGKIVGTIQKGFHFNKEAPAAFAMKGVEIAPLVKEESQLVFAMPTKENEA
FELGFYVCDDKKTVCEEHKITYVISGGKLKPASEVKKAEVAKPEVKATTGKVHKNSHGFIENDLEAAKVLAAKSKKNLLV
DYGAPWCPACVRLETEVFGTKAFKNVTKDFILVALNADMSANKPFGKQYNIKAIPTVLILKPDGTELYRALDFAPADVYA
KRIKDAKKNLQSTADLEKLAQAGDQKAIEALAVKAYNALDMETAVKWYRQIDSKSDRFASAETQWASQQARAEKKSEEYL
AILKKWADLKPQSFTSVTATNEWAEFLKSEKKDLPADLKERLKANSEFLEKLTKSKADTVKWVESWEVSPMAPVERAEAL
SMWKVSAEALGQKEEVVRIQQELQNEVRSLKLSENRPGEVMATLFYFRQAGLPELEESWLLKLEKANPHSYVPHMKLASY
YVRNKAYEKALPQAKLAVELGEDLRLHNLKTLAEIQKELKQKDEAKKTIEIALAHPQVKEERFKDVLKSLEQMKKDL

Specific function: Unknown

COG id: COG0526

COG function: function code OC; Thiol-disulfide isomerase and thioredoxins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62522; Mature: 62522

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLGFILALFVAASAFGRLSDGKATFVVKDGKIVGTIQKGFHFNKEAPAAFAMKGVEIA
CHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEEHHCCCCCCCCCHHHHHCCCEEE
PLVKEESQLVFAMPTKENEAFELGFYVCDDKKTVCEEHKITYVISGGKLKPASEVKKAEV
CCCCCCCCEEEEECCCCCCCEEEEEEEECCCHHHHCCCCEEEEEECCCCCCHHHHHHHHC
AKPEVKATTGKVHKNSHGFIENDLEAAKVLAAKSKKNLLVDYGAPWCPACVRLETEVFGT
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEHHHHHHH
KAFKNVTKDFILVALNADMSANKPFGKQYNIKAIPTVLILKPDGTELYRALDFAPADVYA
HHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEECCEEEEECCCCHHHHHHHCCCCHHHHH
KRIKDAKKNLQSTADLEKLAQAGDQKAIEALAVKAYNALDMETAVKWYRQIDSKSDRFAS
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCC
AETQWASQQARAEKKSEEYLAILKKWADLKPQSFTSVTATNEWAEFLKSEKKDLPADLKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCCHHHHH
RLKANSEFLEKLTKSKADTVKWVESWEVSPMAPVERAEALSMWKVSAEALGQKEEVVRIQ
HHCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
QELQNEVRSLKLSENRPGEVMATLFYFRQAGLPELEESWLLKLEKANPHSYVPHMKLASY
HHHHHHHHCEECCCCCCHHHHHHHHHHHHCCCCCCCHHHEEEEECCCCCCCCCCHHHHHH
YVRNKAYEKALPQAKLAVELGEDLRLHNLKTLAEIQKELKQKDEAKKTIEIALAHPQVKE
HHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHH
ERFKDVLKSLEQMKKDL
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKVLGFILALFVAASAFGRLSDGKATFVVKDGKIVGTIQKGFHFNKEAPAAFAMKGVEIA
CHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEEHHCCCCCCCCCHHHHHCCCEEE
PLVKEESQLVFAMPTKENEAFELGFYVCDDKKTVCEEHKITYVISGGKLKPASEVKKAEV
CCCCCCCCEEEEECCCCCCCEEEEEEEECCCHHHHCCCCEEEEEECCCCCCHHHHHHHHC
AKPEVKATTGKVHKNSHGFIENDLEAAKVLAAKSKKNLLVDYGAPWCPACVRLETEVFGT
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEHHHHHHH
KAFKNVTKDFILVALNADMSANKPFGKQYNIKAIPTVLILKPDGTELYRALDFAPADVYA
HHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEECCEEEEECCCCHHHHHHHCCCCHHHHH
KRIKDAKKNLQSTADLEKLAQAGDQKAIEALAVKAYNALDMETAVKWYRQIDSKSDRFAS
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCC
AETQWASQQARAEKKSEEYLAILKKWADLKPQSFTSVTATNEWAEFLKSEKKDLPADLKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCCHHHHH
RLKANSEFLEKLTKSKADTVKWVESWEVSPMAPVERAEALSMWKVSAEALGQKEEVVRIQ
HHCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
QELQNEVRSLKLSENRPGEVMATLFYFRQAGLPELEESWLLKLEKANPHSYVPHMKLASY
HHHHHHHHCEECCCCCCHHHHHHHHHHHHCCCCCCCHHHEEEEECCCCCCCCCCHHHHHH
YVRNKAYEKALPQAKLAVELGEDLRLHNLKTLAEIQKELKQKDEAKKTIEIALAHPQVKE
HHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHH
ERFKDVLKSLEQMKKDL
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA