Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

Click here to switch to the map view.

The map label for this gene is 42522833

Identifier: 42522833

GI number: 42522833

Start: 1239080

End: 1241359

Strand: Direct

Name: 42522833

Synonym: Bd1312

Alternate gene names: NA

Gene position: 1239080-1241359 (Clockwise)

Preceding gene: 42522832

Following gene: 42522834

Centisome position: 32.75

GC content: 50.83

Gene sequence:

>2280_bases
TTGGCGATGGCTTGCATTCAGCAGTCCCACTGTTCTGATCAGGTAAAGAAACTGCAGACCCAATTGCAGTGGAACTGCGA
ACTTGAAGTCAAATCCCAAAACTGCGCCAAACTTTCAGAAGAGCATCCGGACTGGGCGCCACTGATGCGCAAGTGCGATC
TGGCTTCGCAATGCCAGGAGCAAAAAGAATACGCACAGAAAAAAGCGCTGGCCTGTTTGCGGGGATATAAAAACGCGATG
GTCGATCTGGGAATCTCTTTGAAAGACATGACCGTTTCGCTGGCGGGTCTTGTCGAGGACAGTTGGGAGTCCCTCAAGAA
GAACAACCGTGAACGGGCGGCGTTCCTCAAGCAATGCAACACCTCGTTGTCCTGCAAAAAAGATCTGGTGAAAGACGATC
ATCGCTACAACAAACTTTCTGATGAAGAAATCAACAAACTGCCTGCGTCGTTTTTGTATGTGCAGGCTCAGGATATGAAA
GCTTACAGGTCGTCGCTGGAGCGCGTGCGCCCCAAGCCTTATGTGCCGATTGCCGAGCGCGCTCGTGACGACACCGCAAT
GACCTCTGATCAGAATCAGAAGCTTGAAAACCTGATGAACATCGCCGGTTCCAAAATTAAAGAACAGTATGGCCGCTACA
TGTGCTACAACGCTTTGGCCCGGGAAGAGCTGGAGTGTTACGCCATCGGCACGATCGTTGATCCGACACTGCTGGCAGGC
TACTTCGTAAAAGGGGCTCGAGCCGCCACAGCCGCGGGCCGAATGATCAAGGCTGAAAAAGAGATTCAGGCTGGAACTGA
AGTAGCGGTTGGGGCGGGGAAGGTTTCCCGCAGTGAACTTACCGGCCGTTACATAAGCTATTCTCCGACCAGTGTAGAGC
AGAACACCGCTTGGATTGCCCGTGCTGAAAAAGGTGCGGATACCAACGTGACATTCCTGGATGTGGAAAACAGCCAGATG
AAATATCTGAATGACATTTTAAAGGACAAAAACCTTGTGACGGGGTTGACGAATTATCACAAGGAATTGTTGTTTGATAA
TATCAAGGCACTGGAAGCTGCTAACCCGGGGCTGGTCATTGATAAGTACTCTGATTTCAAGTCCTCGCGTTTTGCTTTTT
CAGGCAAAGTCCCCAAGGACATTGAAGAGCAGTTGGAAAAGGTTTTTGACAAAACCAATGCTGAATTCAACAAAAAGCTG
AAAGAGTCAGGCGCCCTGAAGCCCGACACCAAAACAGAAGACTGGTTCCGCGCTGGCATTGGCAATTCGGCTGATGAGGC
CAATATGGCGGCCCGCTACTCCCGTCAGTTGGACAAGAACGAAGTTCAGAGCTTCCGCAAGGATGGTTTGAAGACCACGA
TGCAACAGAAAATCAATTCCCTTGAAAAGCAACGCCAAGAGCTGCGCACGGAAGTCGCTGGCACCGGCATGGTGGATGGA
AAGACTTTCGATCAGGACGTGTTTGATATCGTCCGTAAAGGCAAAGGGGATACGGCCCAGGTGCAGCAGGCCTTGAAAAA
CCGCTATGCTTTAAGTGACATTTCAACCGGCACCGTCAAAAAATTGCAGTCTTATGTGACTGCGACAGATGAGTTTTCAC
CGGGGATTTATATCGCCAAGCGGGAGATTGCCCATCTGAATGCAGCAGATCAGGGTGGTTTGTCGGTGGACATTATCGGG
CTGGGTTCAGCGAACTTAAAAGGCACGGCTGAAGCGTTGGCTTCTTCTTCCAACGTGAACCGGGCCCTGGAGACCACTCG
GGCGGCAGAAAAAGCCGTCACCAAAAAATTCAATGACCAGAAAAAGCAGTTTGAGGATGTTTTGACCAAAGCCGTCCCGT
CAGGGAAGTTGAAGTCTTTGTGTTCAGGGGATGACTGCGTGGCCGTGGCGGTGAAGCCTTTAAATCAGGCTGAAAAGCAG
GACATCTTAAAGGGTCTGGCTAACACCGACTACTCGGGAACCTACCGACTGGCCTTCATTCCGGATGGTGTGCGGAATGT
ATCGGCCCGCAACGCTTTGGCCAATCATGGAGAGTCGGTTGAAAAAATCCTGCGCCAATCCTTGGGGGCAAGGATGGAGC
CACGCAAACTTAAAGGCCTGACTTTCGGTGTGGACATGCGGACTCAGAATTTAAACGAGGGCAGTGTCAAATTGCTGATG
GGTGAAGCCAAAGGCGTGACGCTGACATCCAGCGAACGCAAACAAATTCAGGAAGCCTTCAAAGAAGCCATCCAAAAATT
CAACACCTCCACCTCCGCCAACTACAACGCCCTCCCATAA

Upstream 100 bases:

>100_bases
CGAAAAGACAGGTGAGGAATATGAGTTGGGTCTTCACATAATTGTCATCATCTTAACAATAGTCTGGGCTGGTCCGGGAA
AAGCCGCACCCGAGGTGGCT

Downstream 100 bases:

>100_bases
AAAGGTGCCTGGTTGTTTTATCTGGCTACAGTGCAGAATCTTGTTCGAAATACATTTATCCTGCCCCCTCAGACTGAGCT
ATCGTAAAGGCCTGAGGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 759; Mature: 758

Protein sequence:

>759_residues
MAMACIQQSHCSDQVKKLQTQLQWNCELEVKSQNCAKLSEEHPDWAPLMRKCDLASQCQEQKEYAQKKALACLRGYKNAM
VDLGISLKDMTVSLAGLVEDSWESLKKNNRERAAFLKQCNTSLSCKKDLVKDDHRYNKLSDEEINKLPASFLYVQAQDMK
AYRSSLERVRPKPYVPIAERARDDTAMTSDQNQKLENLMNIAGSKIKEQYGRYMCYNALAREELECYAIGTIVDPTLLAG
YFVKGARAATAAGRMIKAEKEIQAGTEVAVGAGKVSRSELTGRYISYSPTSVEQNTAWIARAEKGADTNVTFLDVENSQM
KYLNDILKDKNLVTGLTNYHKELLFDNIKALEAANPGLVIDKYSDFKSSRFAFSGKVPKDIEEQLEKVFDKTNAEFNKKL
KESGALKPDTKTEDWFRAGIGNSADEANMAARYSRQLDKNEVQSFRKDGLKTTMQQKINSLEKQRQELRTEVAGTGMVDG
KTFDQDVFDIVRKGKGDTAQVQQALKNRYALSDISTGTVKKLQSYVTATDEFSPGIYIAKREIAHLNAADQGGLSVDIIG
LGSANLKGTAEALASSSNVNRALETTRAAEKAVTKKFNDQKKQFEDVLTKAVPSGKLKSLCSGDDCVAVAVKPLNQAEKQ
DILKGLANTDYSGTYRLAFIPDGVRNVSARNALANHGESVEKILRQSLGARMEPRKLKGLTFGVDMRTQNLNEGSVKLLM
GEAKGVTLTSSERKQIQEAFKEAIQKFNTSTSANYNALP

Sequences:

>Translated_759_residues
MAMACIQQSHCSDQVKKLQTQLQWNCELEVKSQNCAKLSEEHPDWAPLMRKCDLASQCQEQKEYAQKKALACLRGYKNAM
VDLGISLKDMTVSLAGLVEDSWESLKKNNRERAAFLKQCNTSLSCKKDLVKDDHRYNKLSDEEINKLPASFLYVQAQDMK
AYRSSLERVRPKPYVPIAERARDDTAMTSDQNQKLENLMNIAGSKIKEQYGRYMCYNALAREELECYAIGTIVDPTLLAG
YFVKGARAATAAGRMIKAEKEIQAGTEVAVGAGKVSRSELTGRYISYSPTSVEQNTAWIARAEKGADTNVTFLDVENSQM
KYLNDILKDKNLVTGLTNYHKELLFDNIKALEAANPGLVIDKYSDFKSSRFAFSGKVPKDIEEQLEKVFDKTNAEFNKKL
KESGALKPDTKTEDWFRAGIGNSADEANMAARYSRQLDKNEVQSFRKDGLKTTMQQKINSLEKQRQELRTEVAGTGMVDG
KTFDQDVFDIVRKGKGDTAQVQQALKNRYALSDISTGTVKKLQSYVTATDEFSPGIYIAKREIAHLNAADQGGLSVDIIG
LGSANLKGTAEALASSSNVNRALETTRAAEKAVTKKFNDQKKQFEDVLTKAVPSGKLKSLCSGDDCVAVAVKPLNQAEKQ
DILKGLANTDYSGTYRLAFIPDGVRNVSARNALANHGESVEKILRQSLGARMEPRKLKGLTFGVDMRTQNLNEGSVKLLM
GEAKGVTLTSSERKQIQEAFKEAIQKFNTSTSANYNALP
>Mature_758_residues
AMACIQQSHCSDQVKKLQTQLQWNCELEVKSQNCAKLSEEHPDWAPLMRKCDLASQCQEQKEYAQKKALACLRGYKNAMV
DLGISLKDMTVSLAGLVEDSWESLKKNNRERAAFLKQCNTSLSCKKDLVKDDHRYNKLSDEEINKLPASFLYVQAQDMKA
YRSSLERVRPKPYVPIAERARDDTAMTSDQNQKLENLMNIAGSKIKEQYGRYMCYNALAREELECYAIGTIVDPTLLAGY
FVKGARAATAAGRMIKAEKEIQAGTEVAVGAGKVSRSELTGRYISYSPTSVEQNTAWIARAEKGADTNVTFLDVENSQMK
YLNDILKDKNLVTGLTNYHKELLFDNIKALEAANPGLVIDKYSDFKSSRFAFSGKVPKDIEEQLEKVFDKTNAEFNKKLK
ESGALKPDTKTEDWFRAGIGNSADEANMAARYSRQLDKNEVQSFRKDGLKTTMQQKINSLEKQRQELRTEVAGTGMVDGK
TFDQDVFDIVRKGKGDTAQVQQALKNRYALSDISTGTVKKLQSYVTATDEFSPGIYIAKREIAHLNAADQGGLSVDIIGL
GSANLKGTAEALASSSNVNRALETTRAAEKAVTKKFNDQKKQFEDVLTKAVPSGKLKSLCSGDDCVAVAVKPLNQAEKQD
ILKGLANTDYSGTYRLAFIPDGVRNVSARNALANHGESVEKILRQSLGARMEPRKLKGLTFGVDMRTQNLNEGSVKLLMG
EAKGVTLTSSERKQIQEAFKEAIQKFNTSTSANYNALP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 84179; Mature: 84048

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMACIQQSHCSDQVKKLQTQLQWNCELEVKSQNCAKLSEEHPDWAPLMRKCDLASQCQE
CCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCHHHHHHHCCHHHHHHH
QKEYAQKKALACLRGYKNAMVDLGISLKDMTVSLAGLVEDSWESLKKNNRERAAFLKQCN
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
TSLSCKKDLVKDDHRYNKLSDEEINKLPASFLYVQAQDMKAYRSSLERVRPKPYVPIAER
CCCHHHHHHHHCCHHHCCCCHHHHHHCCCHHEEEEHHHHHHHHHHHHHCCCCCCCCHHHH
ARDDTAMTSDQNQKLENLMNIAGSKIKEQYGRYMCYNALAREELECYAIGTIVDPTLLAG
CCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHCHHHHHH
YFVKGARAATAAGRMIKAEKEIQAGTEVAVGAGKVSRSELTGRYISYSPTSVEQNTAWIA
HHHHCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHCCCEEECCCCCCCCCCHHEE
RAEKGADTNVTFLDVENSQMKYLNDILKDKNLVTGLTNYHKELLFDNIKALEAANPGLVI
ECCCCCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
DKYSDFKSSRFAFSGKVPKDIEEQLEKVFDKTNAEFNKKLKESGALKPDTKTEDWFRAGI
ECCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHCC
GNSADEANMAARYSRQLDKNEVQSFRKDGLKTTMQQKINSLEKQRQELRTEVAGTGMVDG
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KTFDQDVFDIVRKGKGDTAQVQQALKNRYALSDISTGTVKKLQSYVTATDEFSPGIYIAK
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEH
REIAHLNAADQGGLSVDIIGLGSANLKGTAEALASSSNVNRALETTRAAEKAVTKKFNDQ
HHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
KKQFEDVLTKAVPSGKLKSLCSGDDCVAVAVKPLNQAEKQDILKGLANTDYSGTYRLAFI
HHHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEC
PDGVRNVSARNALANHGESVEKILRQSLGARMEPRKLKGLTFGVDMRTQNLNEGSVKLLM
CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHCCEEEEEEEECCCCCCCCEEEEE
GEAKGVTLTSSERKQIQEAFKEAIQKFNTSTSANYNALP
ECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AMACIQQSHCSDQVKKLQTQLQWNCELEVKSQNCAKLSEEHPDWAPLMRKCDLASQCQE
CHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCHHHHHHHCCHHHHHHH
QKEYAQKKALACLRGYKNAMVDLGISLKDMTVSLAGLVEDSWESLKKNNRERAAFLKQCN
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
TSLSCKKDLVKDDHRYNKLSDEEINKLPASFLYVQAQDMKAYRSSLERVRPKPYVPIAER
CCCHHHHHHHHCCHHHCCCCHHHHHHCCCHHEEEEHHHHHHHHHHHHHCCCCCCCCHHHH
ARDDTAMTSDQNQKLENLMNIAGSKIKEQYGRYMCYNALAREELECYAIGTIVDPTLLAG
CCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHCHHHHHH
YFVKGARAATAAGRMIKAEKEIQAGTEVAVGAGKVSRSELTGRYISYSPTSVEQNTAWIA
HHHHCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHCCCEEECCCCCCCCCCHHEE
RAEKGADTNVTFLDVENSQMKYLNDILKDKNLVTGLTNYHKELLFDNIKALEAANPGLVI
ECCCCCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
DKYSDFKSSRFAFSGKVPKDIEEQLEKVFDKTNAEFNKKLKESGALKPDTKTEDWFRAGI
ECCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHCC
GNSADEANMAARYSRQLDKNEVQSFRKDGLKTTMQQKINSLEKQRQELRTEVAGTGMVDG
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KTFDQDVFDIVRKGKGDTAQVQQALKNRYALSDISTGTVKKLQSYVTATDEFSPGIYIAK
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEH
REIAHLNAADQGGLSVDIIGLGSANLKGTAEALASSSNVNRALETTRAAEKAVTKKFNDQ
HHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
KKQFEDVLTKAVPSGKLKSLCSGDDCVAVAVKPLNQAEKQDILKGLANTDYSGTYRLAFI
HHHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEC
PDGVRNVSARNALANHGESVEKILRQSLGARMEPRKLKGLTFGVDMRTQNLNEGSVKLLM
CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHCCEEEEEEEECCCCCCCCEEEEE
GEAKGVTLTSSERKQIQEAFKEAIQKFNTSTSANYNALP
ECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA