| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522744
Identifier: 42522744
GI number: 42522744
Start: 1148969
End: 1151083
Strand: Direct
Name: 42522744
Synonym: Bd1210
Alternate gene names: NA
Gene position: 1148969-1151083 (Clockwise)
Preceding gene: 42522743
Following gene: 42522745
Centisome position: 30.37
GC content: 53.1
Gene sequence:
>2115_bases ATGCGAGTCCTTGTTTTGAACGTTCTATTATCTGGTTTCGCGTTGATTTCCGTGGGTTGCACCCTGGAGGCCAACATCGC TGGGCAAATGCTGCCTTCACTGTTGCGTCCCGACGGTGGGGAGGGTGTTGTTGATGCCCCTCAAATATCTCAGAAAATTT GTGCGAATGGACCCGTGTTTTCTCAAGCGGAGATGCCGTCGGGTGAAACGATCTTGGCCGGTGACTTTACTCGCATCGGC CCCTGCAGCAGTCCTTTCTTAAAATACAATCCAGTCACGGGTGCAGTTGAGTCCATCGGACCTTCCGACGCCGCCGTCGG AGAAGCTCATGTCATTGAGGCGGATGGGGCTGGAGGTTATTATGTCGGGGGGTACTTTGAGGCCAAGAATGGATCTCAAG CCTTGATTCATATCAAACCGGACGGGACACTTTCGGATTGGAATCCCCAACTTTCCCGTGGAGCTCTTGCTGCAGGGGTG AGTGCTCTGAAGGTTCATGATGGAGTTCTTTATGTGGGAGGAGATTTTACGGCAGCGGGCAGCCCTTCGCTGAGCCGGAC CGCTCTTGCCGCCTTTGATATCGCCACGGGGGATTTGTTGCCTTGGGCGCCACCGCTGACCACGGACAGTTTCGGGGACT TGCACATTCGTTCAATCGAGATTGCTTCTGGATCCATATTTATCGCAGGGGCTTTTGGAACTGTTGGCGCCAATCTTCAT GTTTCCGAAGGTGTAGCCAAGATCAATTTGACTGATAATAATGCCGACACTTCTTTTGCCGCCACGGGGTTAAGTTCTCA ATCCGGAAAAATGAAATGGCATAACGGAACCCTGGTGCTTGTGGATGGTGGAGGACTTGTGATGCTGAACTCCACCAACG GTGCCAACACGGGGTTTGTCGCGGGACTGACGGCGGTGCCGGCTTGGGGAGGCTTCTCGGACTATGAGCTGAAGGGCGAT GAGCTTTGGATTGCCGGAATGTTTGATGCCGTCAATGGTCATCCCACTCGAAACATAGCCAAGTTCGATTTTAGCGGCGC AACTCCAACACTGGACACAGGCTGGGCGACCACCTATGAACCGGAAGGTTGGGTGTCACAGTTAAAAGTCACTGACAGCC ATATCTTGTCGTTCACAAATGGAACTGTGGGGTACTGGAATAAATCGAACGGAACTCAGTACGTTCCTGCAGTGGCCAGT CCGGTGGGCGAAGGCACTTATTTGGGGGCTCTCAATGAAGGTGAAGAGTTGCTGTATGTGCATAAGTCCAAAACACTGGG GCTTCCCGAAACCAGATATCTGGTCATGTATGATCCTGACGGAGAAGTGATGCCCTGGGCTCCTTCGCCCAATGACTATG TCAAGTCCGTGGTTGTCCATGAGGGAAGGATTTTTGTCGGTGGCAGGTTCACCAACATTGGCGTAACACCTTCGGGCAAA CGTTATCTGGTAGAGCTGGACACCGACGGGGAGGTCACCTCCTGGGATGCGGATGCCAATGACGAAATCTATGATATGCG AAGCGTGCAGGGAAGTCTGCTGATTGCGGGTGAATTTACCAGTATTGGCAGCGATGGAATGGGAGCGGCTTATCTTGCAA AACTCAGCTTCGTCGATGCGACAGGTGTGCCTTGGACAACTCAGGTGGACGGTCGGGTGTTTGGATTCGATATTGAAGGA TCTGCCCTGGTGTTCGGTGGCGGTTTTTCAACGGTGGATGGTCAGGCTGTCGAAAATCTGGCAAAGGTGGATCTGAATAC GGGGAGTCTGCTTGGTGGAACACCAACAGTCGACAGTTGGGTCAATGGCGTGGCTGTCATCGATGAAAAAGTTTATCTAT TCGGGCAATTTACGGATGTGGGTGGTGAAGCCCGCTCGCGTCTGGCGGCTTTCAATCTTTCAAATGGTTCAGTGACCGCT TGGGCGCCGAATATCGCCGTCTGGGCCTCCCGGGCCATGCGAGAAGTGTCCGGCAAGGTCATCGTGATGGCCCATTTCAA CACGTACAATGGGGTCAGCTACACCGAGGGCACTCTGGTGCTGGATCCGGATACCGGGGCCAAAGTGGCAGATCCTCGAA ATCTTTATAGTTCGACCGTCTGGCTTGAAGAGTAA
Upstream 100 bases:
>100_bases AGGATGTCTAAGTGTCCTGATCTGGGGCAGGGCAATTAAGTCCCTGCAATCCTTGTCGGTGTAATTCATATTTGAGAACT CGCATTCCGAAAAGTACTGT
Downstream 100 bases:
>100_bases TGACGCCACGTTGCGCTGGCCCAAACCTTGCGTTCCGCAGGGCTTCATTGATAGTCTGAGGCCCTCTATGCAGTCGTAGT TCAATGGATAGAGCACTTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 704; Mature: 704
Protein sequence:
>704_residues MRVLVLNVLLSGFALISVGCTLEANIAGQMLPSLLRPDGGEGVVDAPQISQKICANGPVFSQAEMPSGETILAGDFTRIG PCSSPFLKYNPVTGAVESIGPSDAAVGEAHVIEADGAGGYYVGGYFEAKNGSQALIHIKPDGTLSDWNPQLSRGALAAGV SALKVHDGVLYVGGDFTAAGSPSLSRTALAAFDIATGDLLPWAPPLTTDSFGDLHIRSIEIASGSIFIAGAFGTVGANLH VSEGVAKINLTDNNADTSFAATGLSSQSGKMKWHNGTLVLVDGGGLVMLNSTNGANTGFVAGLTAVPAWGGFSDYELKGD ELWIAGMFDAVNGHPTRNIAKFDFSGATPTLDTGWATTYEPEGWVSQLKVTDSHILSFTNGTVGYWNKSNGTQYVPAVAS PVGEGTYLGALNEGEELLYVHKSKTLGLPETRYLVMYDPDGEVMPWAPSPNDYVKSVVVHEGRIFVGGRFTNIGVTPSGK RYLVELDTDGEVTSWDADANDEIYDMRSVQGSLLIAGEFTSIGSDGMGAAYLAKLSFVDATGVPWTTQVDGRVFGFDIEG SALVFGGGFSTVDGQAVENLAKVDLNTGSLLGGTPTVDSWVNGVAVIDEKVYLFGQFTDVGGEARSRLAAFNLSNGSVTA WAPNIAVWASRAMREVSGKVIVMAHFNTYNGVSYTEGTLVLDPDTGAKVADPRNLYSSTVWLEE
Sequences:
>Translated_704_residues MRVLVLNVLLSGFALISVGCTLEANIAGQMLPSLLRPDGGEGVVDAPQISQKICANGPVFSQAEMPSGETILAGDFTRIG PCSSPFLKYNPVTGAVESIGPSDAAVGEAHVIEADGAGGYYVGGYFEAKNGSQALIHIKPDGTLSDWNPQLSRGALAAGV SALKVHDGVLYVGGDFTAAGSPSLSRTALAAFDIATGDLLPWAPPLTTDSFGDLHIRSIEIASGSIFIAGAFGTVGANLH VSEGVAKINLTDNNADTSFAATGLSSQSGKMKWHNGTLVLVDGGGLVMLNSTNGANTGFVAGLTAVPAWGGFSDYELKGD ELWIAGMFDAVNGHPTRNIAKFDFSGATPTLDTGWATTYEPEGWVSQLKVTDSHILSFTNGTVGYWNKSNGTQYVPAVAS PVGEGTYLGALNEGEELLYVHKSKTLGLPETRYLVMYDPDGEVMPWAPSPNDYVKSVVVHEGRIFVGGRFTNIGVTPSGK RYLVELDTDGEVTSWDADANDEIYDMRSVQGSLLIAGEFTSIGSDGMGAAYLAKLSFVDATGVPWTTQVDGRVFGFDIEG SALVFGGGFSTVDGQAVENLAKVDLNTGSLLGGTPTVDSWVNGVAVIDEKVYLFGQFTDVGGEARSRLAAFNLSNGSVTA WAPNIAVWASRAMREVSGKVIVMAHFNTYNGVSYTEGTLVLDPDTGAKVADPRNLYSSTVWLEE >Mature_704_residues MRVLVLNVLLSGFALISVGCTLEANIAGQMLPSLLRPDGGEGVVDAPQISQKICANGPVFSQAEMPSGETILAGDFTRIG PCSSPFLKYNPVTGAVESIGPSDAAVGEAHVIEADGAGGYYVGGYFEAKNGSQALIHIKPDGTLSDWNPQLSRGALAAGV SALKVHDGVLYVGGDFTAAGSPSLSRTALAAFDIATGDLLPWAPPLTTDSFGDLHIRSIEIASGSIFIAGAFGTVGANLH VSEGVAKINLTDNNADTSFAATGLSSQSGKMKWHNGTLVLVDGGGLVMLNSTNGANTGFVAGLTAVPAWGGFSDYELKGD ELWIAGMFDAVNGHPTRNIAKFDFSGATPTLDTGWATTYEPEGWVSQLKVTDSHILSFTNGTVGYWNKSNGTQYVPAVAS PVGEGTYLGALNEGEELLYVHKSKTLGLPETRYLVMYDPDGEVMPWAPSPNDYVKSVVVHEGRIFVGGRFTNIGVTPSGK RYLVELDTDGEVTSWDADANDEIYDMRSVQGSLLIAGEFTSIGSDGMGAAYLAKLSFVDATGVPWTTQVDGRVFGFDIEG SALVFGGGFSTVDGQAVENLAKVDLNTGSLLGGTPTVDSWVNGVAVIDEKVYLFGQFTDVGGEARSRLAAFNLSNGSVTA WAPNIAVWASRAMREVSGKVIVMAHFNTYNGVSYTEGTLVLDPDTGAKVADPRNLYSSTVWLEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73734; Mature: 73734
Theoretical pI: Translated: 4.28; Mature: 4.28
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVLVLNVLLSGFALISVGCTLEANIAGQMLPSLLRPDGGEGVVDAPQISQKICANGPVF CEEEEEEHHHHCCEEEEECCEEEECCHHHHHHHHHCCCCCCCCEECHHHHHHHHCCCCCC SQAEMPSGETILAGDFTRIGPCSSPFLKYNPVTGAVESIGPSDAAVGEAHVIEADGAGGY CCCCCCCCCEEEECCCEECCCCCCCCEEECCCCCHHHHCCCCCCCCCCEEEEEECCCCCE YVGGYFEAKNGSQALIHIKPDGTLSDWNPQLSRGALAAGVSALKVHDGVLYVGGDFTAAG EEEEEEECCCCCEEEEEECCCCCCCCCCCCHHCCHHHHCCEEEEEECCEEEECCCCCCCC SPSLSRTALAAFDIATGDLLPWAPPLTTDSFGDLHIRSIEIASGSIFIAGAFGTVGANLH CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCEEE VSEGVAKINLTDNNADTSFAATGLSSQSGKMKWHNGTLVLVDGGGLVMLNSTNGANTGFV ECCCEEEEEEECCCCCCEEEEECCCCCCCCEEEECCEEEEECCCCEEEEECCCCCCCCEE AGLTAVPAWGGFSDYELKGDELWIAGMFDAVNGHPTRNIAKFDFSGATPTLDTGWATTYE EEEEECCCCCCCCCCEECCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCEEEC PEGWVSQLKVTDSHILSFTNGTVGYWNKSNGTQYVPAVASPVGEGTYLGALNEGEELLYV CCCCCEEEEEECCEEEEECCCEEEEEECCCCCEECCHHCCCCCCCEEEEECCCCCEEEEE HKSKTLGLPETRYLVMYDPDGEVMPWAPSPNDYVKSVVVHEGRIFVGGRFTNIGVTPSGK ECCCCCCCCCCEEEEEECCCCCEEECCCCCHHHHHEEEEECCEEEECCEEEEECCCCCCC RYLVELDTDGEVTSWDADANDEIYDMRSVQGSLLIAGEFTSIGSDGMGAAYLAKLSFVDA EEEEEECCCCCEEEECCCCCCCEEEHHCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEC TGVPWTTQVDGRVFGFDIEGSALVFGGGFSTVDGQAVENLAKVDLNTGSLLGGTPTVDSW CCCCEEEEECCEEEEEEECCCEEEEECCCCCCCCHHHHHHHEEECCCCCCCCCCCCHHHH VNGVAVIDEKVYLFGQFTDVGGEARSRLAAFNLSNGSVTAWAPNIAVWASRAMREVSGKV HCCEEEEECEEEEEEEEECCCCHHHCEEEEEECCCCCEEEECCCHHHHHHHHHHHHCCCE IVMAHFNTYNGVSYTEGTLVLDPDTGAKVADPRNLYSSTVWLEE EEEEEECCCCCCEEECCEEEECCCCCCCCCCCHHHHCCEEEEEC >Mature Secondary Structure MRVLVLNVLLSGFALISVGCTLEANIAGQMLPSLLRPDGGEGVVDAPQISQKICANGPVF CEEEEEEHHHHCCEEEEECCEEEECCHHHHHHHHHCCCCCCCCEECHHHHHHHHCCCCCC SQAEMPSGETILAGDFTRIGPCSSPFLKYNPVTGAVESIGPSDAAVGEAHVIEADGAGGY CCCCCCCCCEEEECCCEECCCCCCCCEEECCCCCHHHHCCCCCCCCCCEEEEEECCCCCE YVGGYFEAKNGSQALIHIKPDGTLSDWNPQLSRGALAAGVSALKVHDGVLYVGGDFTAAG EEEEEEECCCCCEEEEEECCCCCCCCCCCCHHCCHHHHCCEEEEEECCEEEECCCCCCCC SPSLSRTALAAFDIATGDLLPWAPPLTTDSFGDLHIRSIEIASGSIFIAGAFGTVGANLH CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCEEE VSEGVAKINLTDNNADTSFAATGLSSQSGKMKWHNGTLVLVDGGGLVMLNSTNGANTGFV ECCCEEEEEEECCCCCCEEEEECCCCCCCCEEEECCEEEEECCCCEEEEECCCCCCCCEE AGLTAVPAWGGFSDYELKGDELWIAGMFDAVNGHPTRNIAKFDFSGATPTLDTGWATTYE EEEEECCCCCCCCCCEECCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCEEEC PEGWVSQLKVTDSHILSFTNGTVGYWNKSNGTQYVPAVASPVGEGTYLGALNEGEELLYV CCCCCEEEEEECCEEEEECCCEEEEEECCCCCEECCHHCCCCCCCEEEEECCCCCEEEEE HKSKTLGLPETRYLVMYDPDGEVMPWAPSPNDYVKSVVVHEGRIFVGGRFTNIGVTPSGK ECCCCCCCCCCEEEEEECCCCCEEECCCCCHHHHHEEEEECCEEEECCEEEEECCCCCCC RYLVELDTDGEVTSWDADANDEIYDMRSVQGSLLIAGEFTSIGSDGMGAAYLAKLSFVDA EEEEEECCCCCEEEECCCCCCCEEEHHCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEC TGVPWTTQVDGRVFGFDIEGSALVFGGGFSTVDGQAVENLAKVDLNTGSLLGGTPTVDSW CCCCEEEEECCEEEEEEECCCEEEEECCCCCCCCHHHHHHHEEECCCCCCCCCCCCHHHH VNGVAVIDEKVYLFGQFTDVGGEARSRLAAFNLSNGSVTAWAPNIAVWASRAMREVSGKV HCCEEEEECEEEEEEEEECCCCHHHCEEEEEECCCCCEEEECCCHHHHHHHHHHHHCCCE IVMAHFNTYNGVSYTEGTLVLDPDTGAKVADPRNLYSSTVWLEE EEEEEECCCCCCEEECCEEEECCCCCCCCCCCHHHHCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA