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The map label for this gene is rpsA [H]

Identifier: 42522733

GI number: 42522733

Start: 1138486

End: 1139682

Strand: Direct

Name: rpsA [H]

Synonym: Bd1198

Alternate gene names: 42522733

Gene position: 1138486-1139682 (Clockwise)

Preceding gene: 42522732

Following gene: 42522734

Centisome position: 30.1

GC content: 49.04

Gene sequence:

>1197_bases
ATGTCTAAAAAAGATATTTTTGGTGATGATATTAACGAGACAAAAGACTTCGCAAGTTTCGAAGAACTTTTTGCTCAATC
TGAAAAAGGGATGAAGACCAAACTTTCCGTGGGCGATCAGGTTCATGGCGAGATCCTTTCCATCGGTAAAGAAGAGGCCT
TTGTGGCCACGGGCACTCCGACAGACGGCATGATCCTGACCAAGGATCTTTTGGATGAAAACAAAGAAGTAAAATACAAA
GTCGGCGATTACATCGACTGCGTTGTGACTTCCATCAAAGGTGGCGAAGTTCGTCTGGCGAAAAAAGGCTCGATGAATGC
TTCCACAGATTCTTTGGAAGACGCTTTCGACATGGAACTTCCGGTGGAAGGCCGTGTGACTGAAACCTGCAATGGCGGTT
TCCGCGTGAGCATCCAGGGTAAAACGGCGTTCTGCCCAATCAGCCAGATCGACAGCCGCTTTGTTCAGGATGCCAATGAA
TACGTTGGTAAAAAATTCGACTTCATGATCACTCAGCTGGATCCAAAAGGGCGCAACATCGTTGTCTCCCGCCGCAAGGT
TCTGGATCTGCAAAAAGCTGAAAACGAAGGTACGTTCATGCTGAAACATCAGCCGGGCGCTTTGCTGGAAGGCAAGATCG
TTCGTCTGGAAAAATTCGGTGCGTTCGTGGAGCTGGAAGCAGGCATCGAAGGTCTGATCCACGTTTCTGAACTTTCCTGG
TCCCGCGTTCATGACCCTAAAGAAGTGGTGATGGCCGGTCAGCCAGTGACAGTGAAACTGATCAAAATGGAAGAAGTCGA
CGGACGTCTGAAAATTTCTTTGTCCCTGAAACAGGCTGACGGCGCTGGCAATCCTTGGATGACAGTTCCGCAGAAATTCC
CAGTGGGCACCGTGGTGCAGGGGAAAGTGGAAAAGAAAGAAACATACGGTCTGTTCGTAAACATCGCTCCGGGTGTGACG
GGTCTTTTGCCTCGCTCTAAATGGCGTGATTCCGTGGATGCCGCTCAATACGAAAACAAAAAGCGCGGGGACGATGTGAC
TGTTCAGGTGGATCAGATCATGTTTGAAGAAAAGAAGATTTCTTTGGCTTTGCCTGGTGAAGCTGAAGATCACAGCTGGA
AATCCCACTCCACAACCTCTTCCGGGTTGGGGGCGATGGCAGAGGCTTTGAAGGGCCTTAACATCAAGAAGAACTAG

Upstream 100 bases:

>100_bases
GTTGTTCCTAAAGACTTGAAGGGCAACTCGCTGCGGCGGTGCTGGTCAAAGTTTGGTGGGACCTTTATCCTCTCTGTTCT
CTTTAACTAAGGACTGCTTT

Downstream 100 bases:

>100_bases
TTGTTTCATTTTGATATTCTGAAGTTGTCAAAAGCCCTTTGGGTCTAAACCCAAGGGGCTTTTTTTTGTGGCTACTTTAG
TTTGGAAAACAGTTTTTCAT

Product: 30S ribosomal protein S1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MSKKDIFGDDINETKDFASFEELFAQSEKGMKTKLSVGDQVHGEILSIGKEEAFVATGTPTDGMILTKDLLDENKEVKYK
VGDYIDCVVTSIKGGEVRLAKKGSMNASTDSLEDAFDMELPVEGRVTETCNGGFRVSIQGKTAFCPISQIDSRFVQDANE
YVGKKFDFMITQLDPKGRNIVVSRRKVLDLQKAENEGTFMLKHQPGALLEGKIVRLEKFGAFVELEAGIEGLIHVSELSW
SRVHDPKEVVMAGQPVTVKLIKMEEVDGRLKISLSLKQADGAGNPWMTVPQKFPVGTVVQGKVEKKETYGLFVNIAPGVT
GLLPRSKWRDSVDAAQYENKKRGDDVTVQVDQIMFEEKKISLALPGEAEDHSWKSHSTTSSGLGAMAEALKGLNIKKN

Sequences:

>Translated_398_residues
MSKKDIFGDDINETKDFASFEELFAQSEKGMKTKLSVGDQVHGEILSIGKEEAFVATGTPTDGMILTKDLLDENKEVKYK
VGDYIDCVVTSIKGGEVRLAKKGSMNASTDSLEDAFDMELPVEGRVTETCNGGFRVSIQGKTAFCPISQIDSRFVQDANE
YVGKKFDFMITQLDPKGRNIVVSRRKVLDLQKAENEGTFMLKHQPGALLEGKIVRLEKFGAFVELEAGIEGLIHVSELSW
SRVHDPKEVVMAGQPVTVKLIKMEEVDGRLKISLSLKQADGAGNPWMTVPQKFPVGTVVQGKVEKKETYGLFVNIAPGVT
GLLPRSKWRDSVDAAQYENKKRGDDVTVQVDQIMFEEKKISLALPGEAEDHSWKSHSTTSSGLGAMAEALKGLNIKKN
>Mature_397_residues
SKKDIFGDDINETKDFASFEELFAQSEKGMKTKLSVGDQVHGEILSIGKEEAFVATGTPTDGMILTKDLLDENKEVKYKV
GDYIDCVVTSIKGGEVRLAKKGSMNASTDSLEDAFDMELPVEGRVTETCNGGFRVSIQGKTAFCPISQIDSRFVQDANEY
VGKKFDFMITQLDPKGRNIVVSRRKVLDLQKAENEGTFMLKHQPGALLEGKIVRLEKFGAFVELEAGIEGLIHVSELSWS
RVHDPKEVVMAGQPVTVKLIKMEEVDGRLKISLSLKQADGAGNPWMTVPQKFPVGTVVQGKVEKKETYGLFVNIAPGVTG
LLPRSKWRDSVDAAQYENKKRGDDVTVQVDQIMFEEKKISLALPGEAEDHSWKSHSTTSSGLGAMAEALKGLNIKKN

Specific function: Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) [H]

COG id: COG0539

COG function: function code J; Ribosomal protein S1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 S1 motif domains [H]

Homologues:

Organism=Escherichia coli, GI1787140, Length=312, Percent_Identity=32.6923076923077, Blast_Score=169, Evalue=4e-43,
Organism=Escherichia coli, GI87082262, Length=81, Percent_Identity=38.2716049382716, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: 16,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003451
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR000110
- InterPro:   IPR022967 [H]

Pfam domain/function: PF02401 LYTB; PF00575 S1 [H]

EC number: =1.17.1.2 [H]

Molecular weight: Translated: 43782; Mature: 43650

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKDIFGDDINETKDFASFEELFAQSEKGMKTKLSVGDQVHGEILSIGKEEAFVATGTP
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHCCCCCEEEEECCC
TDGMILTKDLLDENKEVKYKVGDYIDCVVTSIKGGEVRLAKKGSMNASTDSLEDAFDMEL
CCCEEEEHHHHCCCCEEEEECCCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHCCCC
PVEGRVTETCNGGFRVSIQGKTAFCPISQIDSRFVQDANEYVGKKFDFMITQLDPKGRNI
CCCCCEEEECCCCEEEEECCCEEECCHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCEE
VVSRRKVLDLQKAENEGTFMLKHQPGALLEGKIVRLEKFGAFVELEAGIEGLIHVSELSW
EEEHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCH
SRVHDPKEVVMAGQPVTVKLIKMEEVDGRLKISLSLKQADGAGNPWMTVPQKFPVGTVVQ
HHCCCCHHHEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCEECCCCCCCCCEEE
GKVEKKETYGLFVNIAPGVTGLLPRSKWRDSVDAAQYENKKRGDDVTVQVDQIMFEEKKI
CCCCCCEEEEEEEECCCCCCCCCCCHHHCCCHHHHHHCCCCCCCCEEEEEHHEEEECCEE
SLALPGEAEDHSWKSHSTTSSGLGAMAEALKGLNIKKN
EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKKDIFGDDINETKDFASFEELFAQSEKGMKTKLSVGDQVHGEILSIGKEEAFVATGTP
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHCCCCCEEEEECCC
TDGMILTKDLLDENKEVKYKVGDYIDCVVTSIKGGEVRLAKKGSMNASTDSLEDAFDMEL
CCCEEEEHHHHCCCCEEEEECCCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHCCCC
PVEGRVTETCNGGFRVSIQGKTAFCPISQIDSRFVQDANEYVGKKFDFMITQLDPKGRNI
CCCCCEEEECCCCEEEEECCCEEECCHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCEE
VVSRRKVLDLQKAENEGTFMLKHQPGALLEGKIVRLEKFGAFVELEAGIEGLIHVSELSW
EEEHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCH
SRVHDPKEVVMAGQPVTVKLIKMEEVDGRLKISLSLKQADGAGNPWMTVPQKFPVGTVVQ
HHCCCCHHHEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCEECCCCCCCCCEEE
GKVEKKETYGLFVNIAPGVTGLLPRSKWRDSVDAAQYENKKRGDDVTVQVDQIMFEEKKI
CCCCCCEEEEEEEECCCCCCCCCCCHHHCCCHHHHHHCCCCCCCCEEEEEHHEEEECCEE
SLALPGEAEDHSWKSHSTTSSGLGAMAEALKGLNIKKN
EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]