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The map label for this gene is ycbB [H]

Identifier: 42522720

GI number: 42522720

Start: 1123671

End: 1125404

Strand: Direct

Name: ycbB [H]

Synonym: Bd1181

Alternate gene names: 42522720

Gene position: 1123671-1125404 (Clockwise)

Preceding gene: 42522719

Following gene: 42522721

Centisome position: 29.7

GC content: 45.62

Gene sequence:

>1734_bases
ATGTCTATGAAGAGCTTGTTTAAAAAGACTTTCCTGATCGGTATGTCCATGATGACTCTGGCGCCCCAGTTTGCCTCCGC
AGCACTGGAGTCGCAACTCAGTGGCTATCTGAATAAAGACCTTCAAGAAATCCCGGTTATTTTTGTCCGTGGATCCAACT
TCTATCTTCATAAAGCGACGTTGATTTCTTTGTATGAAAAACGTGGCTATTCCGCCATTTGGGTTGATGCGAATGGTAAA
CCTAACGCAATGGCGGCGGCCGTACGTGAGGCTCTTAAGTATGGTGCGACCTTGAATGGTCTTAATCCCGATGATTATTG
GGATAGAATTGTTGAAAATATCTATACTTCAAACACTGATGGCAGATTCGGACCAACATTTGAGTTGGCAGTATCTGAAG
CCGTCATTCGCTATGTGACCCACCTTTCCACAGGTCGGTTTGATCCGATGGAAATTGATACTGATATTAAAATCTCCAAA
AAGAAATTCACGGAATACGCAGAGTTGAACCAAGTGATCAGTTCTGTACAGGCGAATGTCAGTGCAAAGGCGTTGGTAGC
GGGTTTGGATAAGTTTGCTCCGGCGCATCTTCGCTATGTGGATTTGAAACAGCTGCTGGCTTATTTCCGCAGTATTCAGA
CTGCGGGTGGCTGGTCTCAGATCAAACTTGCTAAAAAGAGTCTTCGCCAAGGTAACCAGGACCCGGCGATTCCGGCTATA
CGTGGTCGTTTGCAGAGTCTGGGGTATGCTGTGCCATCAACAGGTGATATTTATGATGCCGAGCTAAAGCGTGTGATCGA
GGATGTTCAAGGCGTAAATGGTATGGGCGTCGATGGTGTTATCGGGAATGAGGTAATGACCTTCCTGAATACGTCTGTGG
CGGACCGCGTATTCCAACTTGAAGTGAACATGGAAAAACTTCGTTGGTTGCCAAAGGCTATGGAATCCCGTCATGTATTC
GTGAATCTGGCAACGACAGAGTTCCAGTTCTTTGATGAAGGCCGCAAGATCATGCATTTCAAAACAATCAATGGTCAAAG
CTACAGACGTACTCCAGTGCTGAGAAATATGTTGAGCTTCGTAGAACTGAATCCGACGTGGACTGCTCCAGAGTCAATTA
TCTTTAAAGACAAGATAAATACGCTGCGAGGCAAGGATGGTCAGGAGTATTTGAGAAAGCACCGCATGCGACTCATAAGA
AAATCAGATGGTAAAGAGGTAATTCCATCAGACGAACTGTTACAAAGTCTTTCTCGCAGCAATTTTCCATACCTATTGCG
CCAAGATCCTTGGAGAAAGAATGCTTTGGGTTCTATCAAGTTTCCATTGCCAAATGAATGGTCCATTTATTTGCATCATA
CGGATAATCCAGATCTGTTTGATGAGAGCAAGAGACACTTAAGTTCAGGGTGCGTTCGCCTGGAAGATCCATTCACTTTT
GCTGAGTATATCTTGCGTAACAACGTGGCGGTCAAGTCAACGCAGACAGATGACTACTGGCCCAAGGATAAACTGGAGTC
CTTTGTGCCGCCGGAAAAGTCAGAAGCTTATGTCGATCGTGAAAACTGGGAAAAGCGCATTCACTTGAAGGTGCCAGTTC
CAGTTTACCTGATGTATCTGACGGTGGATCGCGCCCAAGACGGTGCGGTGAGATTCGTGAAAGACGTCTATGGTCAGGAC
GAGCGTGTGGCAAAAACAATGAAAGCAGTGAGACATGGCAATGAACTATTCTAA

Upstream 100 bases:

>100_bases
ACAAATTGGGGCCCCTGTCTAGTAAACATTTCCCGTACGCAAGTATAGGCCCCGTACAGCTGGCACTTTTATTGGATATA
TAGAACCTGAAGAGGTTTCT

Downstream 100 bases:

>100_bases
AGGAGCCATGAATATGAAAAAGCAGCTTTGGACAGTATTGTCTGTGATGTTGTTTGCTGGTTCAGCCTGGGCTCAGGCTA
TGGGATCGCTGGCAGTGAAT

Product: putative periplasmic protein YcbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 577; Mature: 576

Protein sequence:

>577_residues
MSMKSLFKKTFLIGMSMMTLAPQFASAALESQLSGYLNKDLQEIPVIFVRGSNFYLHKATLISLYEKRGYSAIWVDANGK
PNAMAAAVREALKYGATLNGLNPDDYWDRIVENIYTSNTDGRFGPTFELAVSEAVIRYVTHLSTGRFDPMEIDTDIKISK
KKFTEYAELNQVISSVQANVSAKALVAGLDKFAPAHLRYVDLKQLLAYFRSIQTAGGWSQIKLAKKSLRQGNQDPAIPAI
RGRLQSLGYAVPSTGDIYDAELKRVIEDVQGVNGMGVDGVIGNEVMTFLNTSVADRVFQLEVNMEKLRWLPKAMESRHVF
VNLATTEFQFFDEGRKIMHFKTINGQSYRRTPVLRNMLSFVELNPTWTAPESIIFKDKINTLRGKDGQEYLRKHRMRLIR
KSDGKEVIPSDELLQSLSRSNFPYLLRQDPWRKNALGSIKFPLPNEWSIYLHHTDNPDLFDESKRHLSSGCVRLEDPFTF
AEYILRNNVAVKSTQTDDYWPKDKLESFVPPEKSEAYVDRENWEKRIHLKVPVPVYLMYLTVDRAQDGAVRFVKDVYGQD
ERVAKTMKAVRHGNELF

Sequences:

>Translated_577_residues
MSMKSLFKKTFLIGMSMMTLAPQFASAALESQLSGYLNKDLQEIPVIFVRGSNFYLHKATLISLYEKRGYSAIWVDANGK
PNAMAAAVREALKYGATLNGLNPDDYWDRIVENIYTSNTDGRFGPTFELAVSEAVIRYVTHLSTGRFDPMEIDTDIKISK
KKFTEYAELNQVISSVQANVSAKALVAGLDKFAPAHLRYVDLKQLLAYFRSIQTAGGWSQIKLAKKSLRQGNQDPAIPAI
RGRLQSLGYAVPSTGDIYDAELKRVIEDVQGVNGMGVDGVIGNEVMTFLNTSVADRVFQLEVNMEKLRWLPKAMESRHVF
VNLATTEFQFFDEGRKIMHFKTINGQSYRRTPVLRNMLSFVELNPTWTAPESIIFKDKINTLRGKDGQEYLRKHRMRLIR
KSDGKEVIPSDELLQSLSRSNFPYLLRQDPWRKNALGSIKFPLPNEWSIYLHHTDNPDLFDESKRHLSSGCVRLEDPFTF
AEYILRNNVAVKSTQTDDYWPKDKLESFVPPEKSEAYVDRENWEKRIHLKVPVPVYLMYLTVDRAQDGAVRFVKDVYGQD
ERVAKTMKAVRHGNELF
>Mature_576_residues
SMKSLFKKTFLIGMSMMTLAPQFASAALESQLSGYLNKDLQEIPVIFVRGSNFYLHKATLISLYEKRGYSAIWVDANGKP
NAMAAAVREALKYGATLNGLNPDDYWDRIVENIYTSNTDGRFGPTFELAVSEAVIRYVTHLSTGRFDPMEIDTDIKISKK
KFTEYAELNQVISSVQANVSAKALVAGLDKFAPAHLRYVDLKQLLAYFRSIQTAGGWSQIKLAKKSLRQGNQDPAIPAIR
GRLQSLGYAVPSTGDIYDAELKRVIEDVQGVNGMGVDGVIGNEVMTFLNTSVADRVFQLEVNMEKLRWLPKAMESRHVFV
NLATTEFQFFDEGRKIMHFKTINGQSYRRTPVLRNMLSFVELNPTWTAPESIIFKDKINTLRGKDGQEYLRKHRMRLIRK
SDGKEVIPSDELLQSLSRSNFPYLLRQDPWRKNALGSIKFPLPNEWSIYLHHTDNPDLFDESKRHLSSGCVRLEDPFTFA
EYILRNNVAVKSTQTDDYWPKDKLESFVPPEKSEAYVDRENWEKRIHLKVPVPVYLMYLTVDRAQDGAVRFVKDVYGQDE
RVAKTMKAVRHGNELF

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=439, Percent_Identity=26.1958997722096, Blast_Score=152, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 65891; Mature: 65760

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMKSLFKKTFLIGMSMMTLAPQFASAALESQLSGYLNKDLQEIPVIFVRGSNFYLHKAT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEEECCCEEEEHHH
LISLYEKRGYSAIWVDANGKPNAMAAAVREALKYGATLNGLNPDDYWDRIVENIYTSNTD
HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
GRFGPTFELAVSEAVIRYVTHLSTGRFDPMEIDTDIKISKKKFTEYAELNQVISSVQANV
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCC
SAKALVAGLDKFAPAHLRYVDLKQLLAYFRSIQTAGGWSQIKLAKKSLRQGNQDPAIPAI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHH
RGRLQSLGYAVPSTGDIYDAELKRVIEDVQGVNGMGVDGVIGNEVMTFLNTSVADRVFQL
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEE
EVNMEKLRWLPKAMESRHVFVNLATTEFQFFDEGRKIMHFKTINGQSYRRTPVLRNMLSF
EECHHHHHHHHHHHCCCEEEEEEEEHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
VELNPTWTAPESIIFKDKINTLRGKDGQEYLRKHRMRLIRKSDGKEVIPSDELLQSLSRS
HCCCCCCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
NFPYLLRQDPWRKNALGSIKFPLPNEWSIYLHHTDNPDLFDESKRHLSSGCVRLEDPFTF
CCCEEECCCCCCCCCCCCEECCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEECCCHHH
AEYILRNNVAVKSTQTDDYWPKDKLESFVPPEKSEAYVDRENWEKRIHLKVPVPVYLMYL
HHHHHHCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCHHEEEEEE
TVDRAQDGAVRFVKDVYGQDERVAKTMKAVRHGNELF
EEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SMKSLFKKTFLIGMSMMTLAPQFASAALESQLSGYLNKDLQEIPVIFVRGSNFYLHKAT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEEECCCEEEEHHH
LISLYEKRGYSAIWVDANGKPNAMAAAVREALKYGATLNGLNPDDYWDRIVENIYTSNTD
HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
GRFGPTFELAVSEAVIRYVTHLSTGRFDPMEIDTDIKISKKKFTEYAELNQVISSVQANV
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCC
SAKALVAGLDKFAPAHLRYVDLKQLLAYFRSIQTAGGWSQIKLAKKSLRQGNQDPAIPAI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHH
RGRLQSLGYAVPSTGDIYDAELKRVIEDVQGVNGMGVDGVIGNEVMTFLNTSVADRVFQL
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEE
EVNMEKLRWLPKAMESRHVFVNLATTEFQFFDEGRKIMHFKTINGQSYRRTPVLRNMLSF
EECHHHHHHHHHHHCCCEEEEEEEEHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
VELNPTWTAPESIIFKDKINTLRGKDGQEYLRKHRMRLIRKSDGKEVIPSDELLQSLSRS
HCCCCCCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
NFPYLLRQDPWRKNALGSIKFPLPNEWSIYLHHTDNPDLFDESKRHLSSGCVRLEDPFTF
CCCEEECCCCCCCCCCCCEECCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEECCCHHH
AEYILRNNVAVKSTQTDDYWPKDKLESFVPPEKSEAYVDRENWEKRIHLKVPVPVYLMYL
HHHHHHCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCHHEEEEEE
TVDRAQDGAVRFVKDVYGQDERVAKTMKAVRHGNELF
EEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]