| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522709
Identifier: 42522709
GI number: 42522709
Start: 1110232
End: 1112616
Strand: Direct
Name: 42522709
Synonym: Bd1169
Alternate gene names: NA
Gene position: 1110232-1112616 (Clockwise)
Preceding gene: 42522708
Following gene: 42522713
Centisome position: 29.35
GC content: 51.53
Gene sequence:
>2385_bases TTGAACAAGTTTATAGTCACAATCCACAGGAAGGATCAGGTGCTAAGCCGTGAGGTGAACAAGGACTCGTTCACCATGGG CCGCTCTTTGGACTGTGACTTGTCCTTGAACGACAACAACATCAGCCGGGTTCATCTGGTTGTGAGCCGTCGTTGGAATC AGATCTGGATTGAGGATAAAAACTCCTCCAACGGGACCTTCATCAACGGCACTCGTATAGTGCAAGGGACCCCGGTGAAC GTGGTTCCTTCAGATCGCATTCAGTTGGGCCGTTCAGAATACATCCTGAACCTGGATCTTTTCGTCGAAGAGCCCGCACC GGAACCAGAACCCGAGCCGTCGATTTCTCAATCCGCGGCAACCGTGCCGGAAGAAGAAGACGCCCCACTGGAAGCCACGG TGGCCATGCCGGCACCAAACATGGCGCCTTTCCAGGCGGAAAAAATCCTGCACGAAGCCAAGCGCAAAGCGGCGCAAATC ATCATGGAAGGCGAAACCCAGGCTGAACGCCGGGTGCAGGTCATCTATCAGAAAGCCCGCGAAGCTCAGGCTCAGGCTGA GCTGTTCTATCAGACCCGCATGGCAGAAGCGCACAAGGAAGCGGATGCCATCTTGGCGGACTTCCAAAAGCAGGGGCAAA GCCTGCTGCATGAGGCGCGCAATATGTCCCAGGAACTGCGTGAAGAAGTCGATTCTTACGTTCAGAGCCTGCGCCAGAAG GCTCGCAAAGACACTGAAGACATCATTTCGGAAGCCACACTTGCGGCCGAGAAAATGAAAGACGAAGCCATTGCCCACGG TCGTGAGCTGGCCCGTCAGGAAAGCGAAGCGCTGCTTAAAACCAGCCGCGAGGAAGCGGACCGTATTCTGGATTTCTCGA AACTTCAGATCGAGGAAACTCAAGCCCGTATTCGCACGGATCTGGAAAATGCCCAGGAACTGAATCAGCGCACTTTGCAG GAGGCCCAGGCTGAAGCCGAAAGACTGCTGAATGAATCCCGCATGCAGATTCGCGATGCGGAGGCGCGCTTGCGCGAAGA ATCTGAACAAGCCCGCAATGACAATGCTTCTTTGATTGCCACAGCCAAGGAAACCGCCGACCAGCTTTTGCAGAAGGCCA AGGCCGACTGTGAACAGCAGATTCAAATGGCGAACGAAAAAGTTCAGGAAATCACGGCTGTCAGCAATGAAAAGCAGACC GTTTTAAACGAACTTATGAATAACGTTGCGGCCCGCACGGCGGAACTGCAAAAAGCCACTGAAGAGTTGAGCAAAACCCG TACTGATAATTCCGATCTGCTGTCGCAGGTGGAAAAAGGCCAGGCTTTGCTGAAAGAGCTTCAGACTTCCCATACGGAGC TGGAAAAACAAAAAGCCGCATTGGAAGCTTCTTTGAAAGGTCTGCAGGAAAAGCAGGCCCATCTGACAATGGACGTGCAT GACATCGAATCCAAAAAGGCTCATTTGTTTAAGGAATACGATGCGCAAAAGATCTTCCTGAACGAAAAGCTGGAAAAAGA AAAGACCCAGATGGCGAAGTCCGAAGAGGAGCGTCTGGAAGAAATGCGTCTGGATATGTCCAAACGCCTGCAGAAAATGG AGCGCGATCTGCTGGATGATGTGATCCGCAAGAAGAACTCCATGGTGAAGGACATCCACTCGGCTATTGAAAAAGAGATC GTGATGCTGATGGAGCCTGAAAAATGGCGCAACGTCAGCCAGTCCGTGGAAAATCATATTGCTGAAGCCATCGACGGTAA AGTGGCGTCCCTGTCCCAGTCGTCAATGAGTGAAAAACCGGTCGATCTGATGAAAAAACGCAAAAGCGAAAAACTTCGCT GGGTCACCATGGGTCTTGCCATGGGGGCCGTGGGTTATTTCGTCAGTCAGATTGTCGTGGACCGTGTCGTGAAAGACCAG AGTCCCATGCAGACCATGGTCAGCAACGAAGCGAAGAAACGTCAGGACGATCTGGAAAAACGCAAATTCAATCCTCCGCA GGCGGAGGAGATCAAAGACTCTTATACAGATGCAGTTATTTACACGCGTAACTATATGGATATCTATACCGATGCCCAGT TCCAGCAGAAGCTTTACAAGGCGGCTTCCCAGTATCTGCTGAAAACCTGGCGTGTGGATGAAGACAAGTCCATTCAGGTC ATTTCATCCGCCAATGCCTTGGTGAAGGAACTGGCCGACAAGAAATCAAAAATCCATCCGGACTTTATCAAAGAAGGTAT CGAAAAGATGCGCGAGCTGGAAAACCAGACTTTGGCGCGCATGAAAGATGTCCTGGGTACCGAAGTCCGCCTGGAATCCT ATCGCCGTTTCGAGCGCAATTTCTATAAAGAAGAAGTCCAACGCCGCCGCATGGCCAACTATTGA
Upstream 100 bases:
>100_bases GCGCCCATTTGATGAACATCGTGATGCCGTTGAAGCTTTGGCCGAAGATGCCCTGAACAAGGAAATCGGAAAAACTGCGG CGGTGGTCAGAGGAGCTTAA
Downstream 100 bases:
>100_bases TATAACGGCACTTTCATTTGTCGGATGATCTTCCAGTACTCGGCAGGTTTGTCTTTCTGGGCATTTTCACTGAAAAGATA TGCATTCAGCTGGCGGGCCT
Product: large Ala/Glu-rich protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 794; Mature: 794
Protein sequence:
>794_residues MNKFIVTIHRKDQVLSREVNKDSFTMGRSLDCDLSLNDNNISRVHLVVSRRWNQIWIEDKNSSNGTFINGTRIVQGTPVN VVPSDRIQLGRSEYILNLDLFVEEPAPEPEPEPSISQSAATVPEEEDAPLEATVAMPAPNMAPFQAEKILHEAKRKAAQI IMEGETQAERRVQVIYQKAREAQAQAELFYQTRMAEAHKEADAILADFQKQGQSLLHEARNMSQELREEVDSYVQSLRQK ARKDTEDIISEATLAAEKMKDEAIAHGRELARQESEALLKTSREEADRILDFSKLQIEETQARIRTDLENAQELNQRTLQ EAQAEAERLLNESRMQIRDAEARLREESEQARNDNASLIATAKETADQLLQKAKADCEQQIQMANEKVQEITAVSNEKQT VLNELMNNVAARTAELQKATEELSKTRTDNSDLLSQVEKGQALLKELQTSHTELEKQKAALEASLKGLQEKQAHLTMDVH DIESKKAHLFKEYDAQKIFLNEKLEKEKTQMAKSEEERLEEMRLDMSKRLQKMERDLLDDVIRKKNSMVKDIHSAIEKEI VMLMEPEKWRNVSQSVENHIAEAIDGKVASLSQSSMSEKPVDLMKKRKSEKLRWVTMGLAMGAVGYFVSQIVVDRVVKDQ SPMQTMVSNEAKKRQDDLEKRKFNPPQAEEIKDSYTDAVIYTRNYMDIYTDAQFQQKLYKAASQYLLKTWRVDEDKSIQV ISSANALVKELADKKSKIHPDFIKEGIEKMRELENQTLARMKDVLGTEVRLESYRRFERNFYKEEVQRRRMANY
Sequences:
>Translated_794_residues MNKFIVTIHRKDQVLSREVNKDSFTMGRSLDCDLSLNDNNISRVHLVVSRRWNQIWIEDKNSSNGTFINGTRIVQGTPVN VVPSDRIQLGRSEYILNLDLFVEEPAPEPEPEPSISQSAATVPEEEDAPLEATVAMPAPNMAPFQAEKILHEAKRKAAQI IMEGETQAERRVQVIYQKAREAQAQAELFYQTRMAEAHKEADAILADFQKQGQSLLHEARNMSQELREEVDSYVQSLRQK ARKDTEDIISEATLAAEKMKDEAIAHGRELARQESEALLKTSREEADRILDFSKLQIEETQARIRTDLENAQELNQRTLQ EAQAEAERLLNESRMQIRDAEARLREESEQARNDNASLIATAKETADQLLQKAKADCEQQIQMANEKVQEITAVSNEKQT VLNELMNNVAARTAELQKATEELSKTRTDNSDLLSQVEKGQALLKELQTSHTELEKQKAALEASLKGLQEKQAHLTMDVH DIESKKAHLFKEYDAQKIFLNEKLEKEKTQMAKSEEERLEEMRLDMSKRLQKMERDLLDDVIRKKNSMVKDIHSAIEKEI VMLMEPEKWRNVSQSVENHIAEAIDGKVASLSQSSMSEKPVDLMKKRKSEKLRWVTMGLAMGAVGYFVSQIVVDRVVKDQ SPMQTMVSNEAKKRQDDLEKRKFNPPQAEEIKDSYTDAVIYTRNYMDIYTDAQFQQKLYKAASQYLLKTWRVDEDKSIQV ISSANALVKELADKKSKIHPDFIKEGIEKMRELENQTLARMKDVLGTEVRLESYRRFERNFYKEEVQRRRMANY >Mature_794_residues MNKFIVTIHRKDQVLSREVNKDSFTMGRSLDCDLSLNDNNISRVHLVVSRRWNQIWIEDKNSSNGTFINGTRIVQGTPVN VVPSDRIQLGRSEYILNLDLFVEEPAPEPEPEPSISQSAATVPEEEDAPLEATVAMPAPNMAPFQAEKILHEAKRKAAQI IMEGETQAERRVQVIYQKAREAQAQAELFYQTRMAEAHKEADAILADFQKQGQSLLHEARNMSQELREEVDSYVQSLRQK ARKDTEDIISEATLAAEKMKDEAIAHGRELARQESEALLKTSREEADRILDFSKLQIEETQARIRTDLENAQELNQRTLQ EAQAEAERLLNESRMQIRDAEARLREESEQARNDNASLIATAKETADQLLQKAKADCEQQIQMANEKVQEITAVSNEKQT VLNELMNNVAARTAELQKATEELSKTRTDNSDLLSQVEKGQALLKELQTSHTELEKQKAALEASLKGLQEKQAHLTMDVH DIESKKAHLFKEYDAQKIFLNEKLEKEKTQMAKSEEERLEEMRLDMSKRLQKMERDLLDDVIRKKNSMVKDIHSAIEKEI VMLMEPEKWRNVSQSVENHIAEAIDGKVASLSQSSMSEKPVDLMKKRKSEKLRWVTMGLAMGAVGYFVSQIVVDRVVKDQ SPMQTMVSNEAKKRQDDLEKRKFNPPQAEEIKDSYTDAVIYTRNYMDIYTDAQFQQKLYKAASQYLLKTWRVDEDKSIQV ISSANALVKELADKKSKIHPDFIKEGIEKMRELENQTLARMKDVLGTEVRLESYRRFERNFYKEEVQRRRMANY
Specific function: Unknown
COG id: COG1716
COG function: function code T; FOG: FHA domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91391; Mature: 91391
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS50006 FHA_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKFIVTIHRKDQVLSREVNKDSFTMGRSLDCDLSLNDNNISRVHLVVSRRWNQIWIEDK CCCEEEEEECHHHHHHHHCCCCHHCCCCCCCCEEEECCCCCCEEEEEEECCCCEEEEECC NSSNGTFINGTRIVQGTPVNVVPSDRIQLGRSEYILNLDLFVEEPAPEPEPEPSISQSAA CCCCCCEEECCEEEECCCCCCCCCHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHC TVPEEEDAPLEATVAMPAPNMAPFQAEKILHEAKRKAAQIIMEGETQAERRVQVIYQKAR CCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH EAQAQAELFYQTRMAEAHKEADAILADFQKQGQSLLHEARNMSQELREEVDSYVQSLRQK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARKDTEDIISEATLAAEKMKDEAIAHGRELARQESEALLKTSREEADRILDFSKLQIEET HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QARIRTDLENAQELNQRTLQEAQAEAERLLNESRMQIRDAEARLREESEQARNDNASLIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE TAKETADQLLQKAKADCEQQIQMANEKVQEITAVSNEKQTVLNELMNNVAARTAELQKAT EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH EELSKTRTDNSDLLSQVEKGQALLKELQTSHTELEKQKAALEASLKGLQEKQAHLTMDVH HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHH DIESKKAHLFKEYDAQKIFLNEKLEKEKTQMAKSEEERLEEMRLDMSKRLQKMERDLLDD HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIRKKNSMVKDIHSAIEKEIVMLMEPEKWRNVSQSVENHIAEAIDGKVASLSQSSMSEKP HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC VDLMKKRKSEKLRWVTMGLAMGAVGYFVSQIVVDRVVKDQSPMQTMVSNEAKKRQDDLEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH RKFNPPQAEEIKDSYTDAVIYTRNYMDIYTDAQFQQKLYKAASQYLLKTWRVDEDKSIQV HCCCCCCHHHHHHHHCCEEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH ISSANALVKELADKKSKIHPDFIKEGIEKMRELENQTLARMKDVLGTEVRLESYRRFERN HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FYKEEVQRRRMANY HHHHHHHHHHCCCC >Mature Secondary Structure MNKFIVTIHRKDQVLSREVNKDSFTMGRSLDCDLSLNDNNISRVHLVVSRRWNQIWIEDK CCCEEEEEECHHHHHHHHCCCCHHCCCCCCCCEEEECCCCCCEEEEEEECCCCEEEEECC NSSNGTFINGTRIVQGTPVNVVPSDRIQLGRSEYILNLDLFVEEPAPEPEPEPSISQSAA CCCCCCEEECCEEEECCCCCCCCCHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHC TVPEEEDAPLEATVAMPAPNMAPFQAEKILHEAKRKAAQIIMEGETQAERRVQVIYQKAR CCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH EAQAQAELFYQTRMAEAHKEADAILADFQKQGQSLLHEARNMSQELREEVDSYVQSLRQK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARKDTEDIISEATLAAEKMKDEAIAHGRELARQESEALLKTSREEADRILDFSKLQIEET HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QARIRTDLENAQELNQRTLQEAQAEAERLLNESRMQIRDAEARLREESEQARNDNASLIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE TAKETADQLLQKAKADCEQQIQMANEKVQEITAVSNEKQTVLNELMNNVAARTAELQKAT EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH EELSKTRTDNSDLLSQVEKGQALLKELQTSHTELEKQKAALEASLKGLQEKQAHLTMDVH HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHH DIESKKAHLFKEYDAQKIFLNEKLEKEKTQMAKSEEERLEEMRLDMSKRLQKMERDLLDD HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIRKKNSMVKDIHSAIEKEIVMLMEPEKWRNVSQSVENHIAEAIDGKVASLSQSSMSEKP HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC VDLMKKRKSEKLRWVTMGLAMGAVGYFVSQIVVDRVVKDQSPMQTMVSNEAKKRQDDLEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH RKFNPPQAEEIKDSYTDAVIYTRNYMDIYTDAQFQQKLYKAASQYLLKTWRVDEDKSIQV HCCCCCCHHHHHHHHCCEEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH ISSANALVKELADKKSKIHPDFIKEGIEKMRELENQTLARMKDVLGTEVRLESYRRFERN HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FYKEEVQRRRMANY HHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA