| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522641
Identifier: 42522641
GI number: 42522641
Start: 1030460
End: 1031452
Strand: Direct
Name: 42522641
Synonym: Bd1089
Alternate gene names: NA
Gene position: 1030460-1031452 (Clockwise)
Preceding gene: 42522640
Following gene: 42522642
Centisome position: 27.24
GC content: 49.14
Gene sequence:
>993_bases ATGGCATTTTTTTTGGTCTTCTTATTTTCCTGGAATGTCTTTGCTGGAGAGCCGGATAACTTTTCCGCCCGCCGTGATAA AAACGCGGTGGTAGCCAATGCGGAAATCAACCGCGTTGTGAATGCTCTTTTGGTGATGGCGCTTGATAACTACAACTACA GCAGCAAATCCTGTGATCGCAAAAGATTTTTGAAATATCTGGAAGACGATCTGGATCGCAACCTTCCGCAAATCACCAAA GCGTTGTATTTCAATGTGCCGCAGGCGGGGCCGAAAGTTCACACCGAGGTCCCTTATGGATCAGGCAAGCCGTACACGCA GCTTTATTTTTCTCAAAGCGCCAAAGTACAGGTGAAGGATGCCACCTTCATTGTCGGATTTGACAAGATCGACCACTTCT TTTCTCACGGTTCCATGTATTGGGACATGGTCGGACAGGATCCTAAGCTTCCGGCTGACAAAGTGAAAAAGGCGCTGGAA GTTGGGATCATGCAGGAAAATGCGACGTGGGGGCTGCAGCGACCCGGTGTGAAATCCTATGCCGATCTGATGGCCAACTA TAAAGGCCTTTATTTCTGGCGTGATCTGTTTGATGGAGCTCCCCCCTTGATCGTGTGCAAAGACGGAAAGTTTGTGCAAA ACCGCGAATTTGATCTGGCCAATTACTTTGAACCGGCCATGGATGAAACCATCAATTGCAGCAGCTTCGCCACCCAGGAA ATTCATGACCGGATCACCGCGGTCACAAAAAAATGGAATATGAATTGTCCGGTGGATGCAAATGCCTGCGAGACGGCCAA AAAAGTCCATGCGGACAAAGCCGCCTTGCTGCTGCATCCGAAGTGTCGTGGCACGGGAAATTCCCAAATTGAAAAAGCCT CTCCGATGACCACCAAAGATGTGATCGACACCGCGCAAGCCGCAATGTCCGGCGGCGGGGACTATCTGCTGTTTAAGCTT TTTGGTGAAAAGAAAAAGAAAGGGGCGCAATAA
Upstream 100 bases:
>100_bases AGCGTGGCCAGCAGCCCTAGCCGTAGTACCAAGGTCTGATTCTGTTTAGGGCCTTGCAACAAACTGGGAAAAATGACGAT GCCATTGGATAATAGAACCA
Downstream 100 bases:
>100_bases TGATTTATCTGCTGTTGCTGTCCCTGGCCTGGTCGGCAGGTGAAAAGGTCGATGTGTCGGAAGCCCGTAAAACCTGGAAG ACCTTCCGTGCTTGCGAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MAFFLVFLFSWNVFAGEPDNFSARRDKNAVVANAEINRVVNALLVMALDNYNYSSKSCDRKRFLKYLEDDLDRNLPQITK ALYFNVPQAGPKVHTEVPYGSGKPYTQLYFSQSAKVQVKDATFIVGFDKIDHFFSHGSMYWDMVGQDPKLPADKVKKALE VGIMQENATWGLQRPGVKSYADLMANYKGLYFWRDLFDGAPPLIVCKDGKFVQNREFDLANYFEPAMDETINCSSFATQE IHDRITAVTKKWNMNCPVDANACETAKKVHADKAALLLHPKCRGTGNSQIEKASPMTTKDVIDTAQAAMSGGGDYLLFKL FGEKKKKGAQ
Sequences:
>Translated_330_residues MAFFLVFLFSWNVFAGEPDNFSARRDKNAVVANAEINRVVNALLVMALDNYNYSSKSCDRKRFLKYLEDDLDRNLPQITK ALYFNVPQAGPKVHTEVPYGSGKPYTQLYFSQSAKVQVKDATFIVGFDKIDHFFSHGSMYWDMVGQDPKLPADKVKKALE VGIMQENATWGLQRPGVKSYADLMANYKGLYFWRDLFDGAPPLIVCKDGKFVQNREFDLANYFEPAMDETINCSSFATQE IHDRITAVTKKWNMNCPVDANACETAKKVHADKAALLLHPKCRGTGNSQIEKASPMTTKDVIDTAQAAMSGGGDYLLFKL FGEKKKKGAQ >Mature_329_residues AFFLVFLFSWNVFAGEPDNFSARRDKNAVVANAEINRVVNALLVMALDNYNYSSKSCDRKRFLKYLEDDLDRNLPQITKA LYFNVPQAGPKVHTEVPYGSGKPYTQLYFSQSAKVQVKDATFIVGFDKIDHFFSHGSMYWDMVGQDPKLPADKVKKALEV GIMQENATWGLQRPGVKSYADLMANYKGLYFWRDLFDGAPPLIVCKDGKFVQNREFDLANYFEPAMDETINCSSFATQEI HDRITAVTKKWNMNCPVDANACETAKKVHADKAALLLHPKCRGTGNSQIEKASPMTTKDVIDTAQAAMSGGGDYLLFKLF GEKKKKGAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37102; Mature: 36970
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFFLVFLFSWNVFAGEPDNFSARRDKNAVVANAEINRVVNALLVMALDNYNYSSKSCDR CCEEEEEEHHCCEECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCH KRFLKYLEDDLDRNLPQITKALYFNVPQAGPKVHTEVPYGSGKPYTQLYFSQSAKVQVKD HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEEC ATFIVGFDKIDHFFSHGSMYWDMVGQDPKLPADKVKKALEVGIMQENATWGLQRPGVKSY EEEEEEHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCEEECCCCCCCCCCCHHHH ADLMANYKGLYFWRDLFDGAPPLIVCKDGKFVQNREFDLANYFEPAMDETINCSSFATQE HHHHHCCCHHHHHHHHHCCCCCEEEECCCCEECCCCCCHHHHCCHHHCCCCCCHHHHHHH IHDRITAVTKKWNMNCPVDANACETAKKVHADKAALLLHPKCRGTGNSQIEKASPMTTKD HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHH VIDTAQAAMSGGGDYLLFKLFGEKKKKGAQ HHHHHHHHHCCCCCEEEEEEECHHHHCCCC >Mature Secondary Structure AFFLVFLFSWNVFAGEPDNFSARRDKNAVVANAEINRVVNALLVMALDNYNYSSKSCDR CEEEEEEHHCCEECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCH KRFLKYLEDDLDRNLPQITKALYFNVPQAGPKVHTEVPYGSGKPYTQLYFSQSAKVQVKD HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEEC ATFIVGFDKIDHFFSHGSMYWDMVGQDPKLPADKVKKALEVGIMQENATWGLQRPGVKSY EEEEEEHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCEEECCCCCCCCCCCHHHH ADLMANYKGLYFWRDLFDGAPPLIVCKDGKFVQNREFDLANYFEPAMDETINCSSFATQE HHHHHCCCHHHHHHHHHCCCCCEEEECCCCEECCCCCCHHHHCCHHHCCCCCCHHHHHHH IHDRITAVTKKWNMNCPVDANACETAKKVHADKAALLLHPKCRGTGNSQIEKASPMTTKD HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHH VIDTAQAAMSGGGDYLLFKLFGEKKKKGAQ HHHHHHHHHCCCCCEEEEEEECHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA