| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42522638
Identifier: 42522638
GI number: 42522638
Start: 1028932
End: 1029300
Strand: Direct
Name: 42522638
Synonym: Bd1085
Alternate gene names: NA
Gene position: 1028932-1029300 (Clockwise)
Preceding gene: 42522637
Following gene: 42522640
Centisome position: 27.2
GC content: 48.51
Gene sequence:
>369_bases ATGAGCCTGCTGGGAGTTTGGATTTTTGTGGGTCTGCTTTATCAGGGACAGGAGTTGCCACCCCCGAATCCGGCTTTGCA AATCGTCTATCACTTCAGTTCCGACACTGAAAACACTTTGCGCTATTGGCGCGAAGGGGAGCAGGGGTTTTGTGAAAGAC GGGCTCAGTATTCTTTTAATCAGGAGCAACTTTATCAGAAGGTGATTGAAGTTCATCCTGACAATGCACCCTGGTGCTCT CAGGATTCTGACATGCGCTTGGGTTTTGAAAGCTGGACCGTCCTTCGCCAGATGAACGGCCGCCTGTATTTGAAAGTTTT GATGGGGGAAGAGGACCTGTCATTTATCTGGAAACGAAAGATCGAATAG
Upstream 100 bases:
>100_bases TTGCCGACTTCGGCACGACCCTGAAAGACGTGTGTGCCCAGAAACTTTCGTCCGAGGAGGCGCGGAAAGTGAATGGGATT CTTTCCAAACGAGGGTGGTT
Downstream 100 bases:
>100_bases TTGCCTGCTAGTTGAATCGATTCGCACAGGCCTGCTTCAGCAGATAAGCCTCGCGCCAGGTGTCGGCGCTGCGAAGGGCA CCTTTGAGATACCAGTAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 122; Mature: 121
Protein sequence:
>122_residues MSLLGVWIFVGLLYQGQELPPPNPALQIVYHFSSDTENTLRYWREGEQGFCERRAQYSFNQEQLYQKVIEVHPDNAPWCS QDSDMRLGFESWTVLRQMNGRLYLKVLMGEEDLSFIWKRKIE
Sequences:
>Translated_122_residues MSLLGVWIFVGLLYQGQELPPPNPALQIVYHFSSDTENTLRYWREGEQGFCERRAQYSFNQEQLYQKVIEVHPDNAPWCS QDSDMRLGFESWTVLRQMNGRLYLKVLMGEEDLSFIWKRKIE >Mature_121_residues SLLGVWIFVGLLYQGQELPPPNPALQIVYHFSSDTENTLRYWREGEQGFCERRAQYSFNQEQLYQKVIEVHPDNAPWCSQ DSDMRLGFESWTVLRQMNGRLYLKVLMGEEDLSFIWKRKIE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14523; Mature: 14391
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLGVWIFVGLLYQGQELPPPNPALQIVYHFSSDTENTLRYWREGEQGFCERRAQYSFN CCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHCCCC QEQLYQKVIEVHPDNAPWCSQDSDMRLGFESWTVLRQMNGRLYLKVLMGEEDLSFIWKRK HHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHC IE CC >Mature Secondary Structure SLLGVWIFVGLLYQGQELPPPNPALQIVYHFSSDTENTLRYWREGEQGFCERRAQYSFN CHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHCCCC QEQLYQKVIEVHPDNAPWCSQDSDMRLGFESWTVLRQMNGRLYLKVLMGEEDLSFIWKRK HHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHC IE CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA