| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522530
Identifier: 42522530
GI number: 42522530
Start: 912547
End: 913446
Strand: Direct
Name: 42522530
Synonym: Bd0965
Alternate gene names: NA
Gene position: 912547-913446 (Clockwise)
Preceding gene: 42522529
Following gene: 42522531
Centisome position: 24.12
GC content: 48.56
Gene sequence:
>900_bases ATGAGCGACAGTCCCCTGAAGGGACAATTGGAGTTAGGAATCAACCGTTCCAAGGAGAAGGATAGAAACTTCCACCTTGG CGGTCGCAGTTTCTATTTCTTCGATTTCGACGACAACATCGCCTTTTTGACGACGCCGCTGATTCTTTTCCATAAAAACG ACAAATCTGAAGTGCAGATCTCCAGCGGGGACTTTGCCCAGCACCATCAAACTATTGGCAGCAGTGGTCCCTTTGCGGAC TATAATATCGACTATTGCGATGTGACCGGCACCTTCCGTAATTTCCGTGACCACCATGTGGATGAACTGGAAAAACTGGA AGGCAAAAAGCAAATTTTCGTGCAAGACGTGGCCGCGGCTTTGGGTTATCCCGACTTCCAATGGAAGGGGCCTTCCTGGG AGTGTTTCTATCACGCGGCCTTTAATCAGCGCCCGCTGTCTGTGATCACGGCCCGTGGTCACCATCCGGAAACAATGAAA GACGGTATTCGGGTCTTTGTTCAGAAAAAAGTTCTGCCATTGGAGCCCAACTATCTTAGTGTGTATCCGGTGAGTCATAA AGAGACACGTCAGCTTCTGGGTGATTCGGACTTCAAAGAAGGCACTGCAGAATTAAAACAAAGAGCCATCCGCGCCAGCG TGGAGCAGGCCATTGATCTTTATGGTTACAATCCGCATCACCGCTTCGGGATGTCGGATGATGATCCAAAGAATATCCAG CTGATTGTTGAGGAAATGACTCGACTAAAGGCGAGATTCCCCGAGATGTCGTTCTTTATGATCGAGACTCAGCATGGCAG TTTCATCAAGCATGAGGTCAAATTGAACGGCCTTCGTGGCGACAAAGTGGAAAACCTTTCCCAGCTATCCTTCTTCGAAG AAGATCGACGAAAGTCTTAA
Upstream 100 bases:
>100_bases AAGAAGTAATTTGTTCACCCCCCTTTTCCGAGGGGGGAATCTCTGATAAATTCGTTCCGCATAGTTACAGATCCCATCAC TGGGCATCGAAAGGTGTGTT
Downstream 100 bases:
>100_bases GAATCCTTTCTACGTCCTAATTTATGACGTGCTTCATAAATTGAATGCTCTCAGCTAATTATTTGATAATCTAATGCAAT TAGGACTGCTCCCGTTCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MSDSPLKGQLELGINRSKEKDRNFHLGGRSFYFFDFDDNIAFLTTPLILFHKNDKSEVQISSGDFAQHHQTIGSSGPFAD YNIDYCDVTGTFRNFRDHHVDELEKLEGKKQIFVQDVAAALGYPDFQWKGPSWECFYHAAFNQRPLSVITARGHHPETMK DGIRVFVQKKVLPLEPNYLSVYPVSHKETRQLLGDSDFKEGTAELKQRAIRASVEQAIDLYGYNPHHRFGMSDDDPKNIQ LIVEEMTRLKARFPEMSFFMIETQHGSFIKHEVKLNGLRGDKVENLSQLSFFEEDRRKS
Sequences:
>Translated_299_residues MSDSPLKGQLELGINRSKEKDRNFHLGGRSFYFFDFDDNIAFLTTPLILFHKNDKSEVQISSGDFAQHHQTIGSSGPFAD YNIDYCDVTGTFRNFRDHHVDELEKLEGKKQIFVQDVAAALGYPDFQWKGPSWECFYHAAFNQRPLSVITARGHHPETMK DGIRVFVQKKVLPLEPNYLSVYPVSHKETRQLLGDSDFKEGTAELKQRAIRASVEQAIDLYGYNPHHRFGMSDDDPKNIQ LIVEEMTRLKARFPEMSFFMIETQHGSFIKHEVKLNGLRGDKVENLSQLSFFEEDRRKS >Mature_298_residues SDSPLKGQLELGINRSKEKDRNFHLGGRSFYFFDFDDNIAFLTTPLILFHKNDKSEVQISSGDFAQHHQTIGSSGPFADY NIDYCDVTGTFRNFRDHHVDELEKLEGKKQIFVQDVAAALGYPDFQWKGPSWECFYHAAFNQRPLSVITARGHHPETMKD GIRVFVQKKVLPLEPNYLSVYPVSHKETRQLLGDSDFKEGTAELKQRAIRASVEQAIDLYGYNPHHRFGMSDDDPKNIQL IVEEMTRLKARFPEMSFFMIETQHGSFIKHEVKLNGLRGDKVENLSQLSFFEEDRRKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34541; Mature: 34410
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSPLKGQLELGINRSKEKDRNFHLGGRSFYFFDFDDNIAFLTTPLILFHKNDKSEVQI CCCCCCCCEEEECCCCCCCCCCCEEECCCEEEEEEECCCEEEEEEEEEEEECCCCCEEEE SSGDFAQHHQTIGSSGPFADYNIDYCDVTGTFRNFRDHHVDELEKLEGKKQIFVQDVAAA CCCCHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LGYPDFQWKGPSWECFYHAAFNQRPLSVITARGHHPETMKDGIRVFVQKKVLPLEPNYLS HCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEE VYPVSHKETRQLLGDSDFKEGTAELKQRAIRASVEQAIDLYGYNPHHRFGMSDDDPKNIQ EEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH LIVEEMTRLKARFPEMSFFMIETQHGSFIKHEVKLNGLRGDKVENLSQLSFFEEDRRKS HHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure SDSPLKGQLELGINRSKEKDRNFHLGGRSFYFFDFDDNIAFLTTPLILFHKNDKSEVQI CCCCCCCEEEECCCCCCCCCCCEEECCCEEEEEEECCCEEEEEEEEEEEECCCCCEEEE SSGDFAQHHQTIGSSGPFADYNIDYCDVTGTFRNFRDHHVDELEKLEGKKQIFVQDVAAA CCCCHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LGYPDFQWKGPSWECFYHAAFNQRPLSVITARGHHPETMKDGIRVFVQKKVLPLEPNYLS HCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEE VYPVSHKETRQLLGDSDFKEGTAELKQRAIRASVEQAIDLYGYNPHHRFGMSDDDPKNIQ EEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH LIVEEMTRLKARFPEMSFFMIETQHGSFIKHEVKLNGLRGDKVENLSQLSFFEEDRRKS HHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA