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The map label for this gene is rpoE [H]

Identifier: 42522452

GI number: 42522452

Start: 832285

End: 832773

Strand: Direct

Name: rpoE [H]

Synonym: Bd0881

Alternate gene names: 42522452

Gene position: 832285-832773 (Clockwise)

Preceding gene: 42522451

Following gene: 42522453

Centisome position: 22.0

GC content: 50.72

Gene sequence:

>489_bases
GTGAGTTTTTCTGATGCCGCTGACTTTGCGAAGTTCTATGAGGCCCATGCACCCAAAGTGCGGGGCCTGTTGTTTCGTTT
GGTTGGTGAGTCCGCCTTGAGTGACCTGACTCAGGAGGCATTTATGAAAGCCTGGGAACATCGAAACAAGTTCCGTGCGG
AAAGTGAGGCCTCAACCTGGCTTTATCGTATTGCCTATAACTGCGCTGTGGATCATCTGCGCAAGGCGGGGCGCAAGGAA
GAAGTCAGTCCCGAGCAAGTGGAAGAAAGTCTGGAAAAGAATCTTTCCAACCGAGAACTGGTTGATCTGGCCTTGGGCAC
ATTGGAGATGGATATGCGTGCGGTGGTGGTTCTTTTTTATCTGGAGGATCAATCCTTGAAGGATATTGCGCTGGCACTGG
AGATCCCCGAGGGAACAGTGAAATCCCGTTTAAGCCTGGCTCGTCAGAAGATGAGCGATTTACTGGGTAAGAAAGGAGTG
AGTCTATGA

Upstream 100 bases:

>100_bases
GCCTGGACACGTTGCTGTCGGCCCGCGATGTTTTGACGGAGGAGCAGAGAGCCAAGTTATTCAGCCATGGGTCCCAAGGA
TCTGAGGAGTAGGCGCTTTT

Downstream 100 bases:

>100_bases
GTGATGATTCATTCAAAAATTTTCTTAAAGAAAATGCGGCCCCGGTGCCGGACGCCCCTTTGGGAGAGTCCTCGCGGATC
TGGCGCCACATCGAAGATCG

Product: RNA polymerase sigma-E factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MSFSDAADFAKFYEAHAPKVRGLLFRLVGESALSDLTQEAFMKAWEHRNKFRAESEASTWLYRIAYNCAVDHLRKAGRKE
EVSPEQVEESLEKNLSNRELVDLALGTLEMDMRAVVVLFYLEDQSLKDIALALEIPEGTVKSRLSLARQKMSDLLGKKGV
SL

Sequences:

>Translated_162_residues
MSFSDAADFAKFYEAHAPKVRGLLFRLVGESALSDLTQEAFMKAWEHRNKFRAESEASTWLYRIAYNCAVDHLRKAGRKE
EVSPEQVEESLEKNLSNRELVDLALGTLEMDMRAVVVLFYLEDQSLKDIALALEIPEGTVKSRLSLARQKMSDLLGKKGV
SL
>Mature_161_residues
SFSDAADFAKFYEAHAPKVRGLLFRLVGESALSDLTQEAFMKAWEHRNKFRAESEASTWLYRIAYNCAVDHLRKAGRKEE
VSPEQVEESLEKNLSNRELVDLALGTLEMDMRAVVVLFYLEDQSLKDIALALEIPEGTVKSRLSLARQKMSDLLGKKGVS
L

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=152, Percent_Identity=34.2105263157895, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18326; Mature: 18195

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSDAADFAKFYEAHAPKVRGLLFRLVGESALSDLTQEAFMKAWEHRNKFRAESEASTW
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LYRIAYNCAVDHLRKAGRKEEVSPEQVEESLEKNLSNRELVDLALGTLEMDMRAVVVLFY
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LEDQSLKDIALALEIPEGTVKSRLSLARQKMSDLLGKKGVSL
CCCCCHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SFSDAADFAKFYEAHAPKVRGLLFRLVGESALSDLTQEAFMKAWEHRNKFRAESEASTW
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LYRIAYNCAVDHLRKAGRKEEVSPEQVEESLEKNLSNRELVDLALGTLEMDMRAVVVLFY
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LEDQSLKDIALALEIPEGTVKSRLSLARQKMSDLLGKKGVSL
CCCCCHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]