| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522303
Identifier: 42522303
GI number: 42522303
Start: 675456
End: 677192
Strand: Direct
Name: 42522303
Synonym: Bd0718
Alternate gene names: NA
Gene position: 675456-677192 (Clockwise)
Preceding gene: 42522296
Following gene: 42522305
Centisome position: 17.86
GC content: 52.73
Gene sequence:
>1737_bases GTGGTTCTTTTTGACCACAATGGGCCTATGCTTCAGTCGTGGTTTAGCCTATTTAGCGTCCTATTATTCAGTCCCCAACT TTATGCCGAAAGCCCGCAAAGAGCTTTTATGGAGCAGTTCCAAAGCTCCCGAATCAGCTTCCCGGCGGAGGACTCTCCGT TACTGGGTGACAGCCCGGGGCGTTATCCAGAGCCTTTGAATTTTATCATGACCAATCTCATCAGCTGGATTCCCACCGGT GAACCCAAGCTGATGTCCTCAGGCTGTGCCCCGGAAGTTTGGGCGGCACGCATGCAAGACACGCGGGTTCAGAAGTCCGC CCAGTTGCAGGGGGCCTTGGTGCAGAAATACTTCCAGGACTGCCGGTCCGAACTTGAAACCGGAGACAACGGTTCGTTAG TCAATCTGCGCCGGATGATGACAATGAAGTACGACCCACAGGGGCATCCGTTCCTGCGCCGGGTGGTGGTCAATCTGCCA GGCAACGTAAAACTGAAAGGTCTGCTGGGCTTGAAGGGCGACATGAAACGCCGTCCGCTGGTGATTGTGCGTCTGGGGAT TTTTTCCAACGTTGAGGACTTCAAACCAGAGCGTGCGTGGCTGATGATGTTATTTGAACAGTCGCCGTTTAATGTTTTGA TGCTTGAAAACATGTCCAGCCCGGACTTTGTTGCCAATAACAGCCGCTTCTCTTTCGGGGGGTATGACGAAGGCATTCAG AATATTCTGGTGGCGCGACTGCTGCAGGACCCGATTGAACCTCTGTCGCAGATGGTGGACAGTGTACACGTGTTTGGCAT CAGTCTGGGGGGGCATGGGGTGCTCTATTCCTCCCTTCTGAACAAATACAATTCACCGAAGCGCGGCCCGTTGATCAACA GTTTCACGGCACTGTGTCCGGTGGTGAACCTGCGCTCGACGATGCAGTCCCTGACCCACAGTGGGGTGAAGTCCGCGTTT GTGGATCTGTGGAGCCGCCAGCGCCTGAAAGGCCTTGAGCAGAAAATCCCTTCGCTGGTCACGTATGACAACTTTGCTTT CCTGAGCAAGGCCATCTCTGAAATCGCCCGCACCTATCATGGCGGTCTTTCGTACGTGAAAGCCGTGAATCTGCCACCGG GGCAGGAGGACAGCATTCATTTTTGGGATCTGAATGATTTCTGGCGCCACTACAAGCAGGTCGAAGAGCCGGTGATGATC TATGCAACCGAGCAGGATCCGGCGGTGCCTTATGATCTGAATGCCCAGATGCTTTTGAATAAAGACCTGAAGGTGGACAG CAAAAATATCCGCGTGGTGGAGTTGCCTCAGGGGATGCACTGCACTTTGCCGATTCCTTACGACTGGAGTGCTTTGACCT CGTTGTTCCAGTCTTATATTTTGTCTCATTCCCCGAACTTTAAAATGACCGAACAAAAACTGGAGATGGATCTTTCCGAC GAGGAGTGGACCGGGTTCTTTGACTCCGGCTCTCGCGTGAAGTTTGAAGTCGAAGAGCCAGGCAAAAAACAGGGCTTCGT GACGGTCGGTTTGGAAGTGGAAAATGCCAAGGGCAAAACCAAGTCCATGAGTCTGAGTCTGCCGCTGTCGCAGTTTGATT TCCGTTTCTTCAACAAAGACATGACCGGATCTGAGCAGGAAATGATCGTGCGCTGGCTGAATCAAAATTTGAAAGTGCGC ATTGACCAAAGCAAAGGCAAAGCATTGCTCGTGGCCTCATGGCCGGTGGCCCTTTGA
Upstream 100 bases:
>100_bases GGCTCTATCTTGTGTTCCATGGTATGTGTCTCCTTAAGTACACGGTGAAATTTTAGTGAAGTAAATACTCAAAGTCACTC CGGAAAAAGGTGATGACTCA
Downstream 100 bases:
>100_bases TTATTTCGACAGTTCTTCTTTGAAGAAGTCGGAATGCTCCGCCAGCTTTTCCATATAGCCCTGCACATCCTCTTTTGCCT CTGCGGACAGGCGGTGGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 578; Mature: 578
Protein sequence:
>578_residues MVLFDHNGPMLQSWFSLFSVLLFSPQLYAESPQRAFMEQFQSSRISFPAEDSPLLGDSPGRYPEPLNFIMTNLISWIPTG EPKLMSSGCAPEVWAARMQDTRVQKSAQLQGALVQKYFQDCRSELETGDNGSLVNLRRMMTMKYDPQGHPFLRRVVVNLP GNVKLKGLLGLKGDMKRRPLVIVRLGIFSNVEDFKPERAWLMMLFEQSPFNVLMLENMSSPDFVANNSRFSFGGYDEGIQ NILVARLLQDPIEPLSQMVDSVHVFGISLGGHGVLYSSLLNKYNSPKRGPLINSFTALCPVVNLRSTMQSLTHSGVKSAF VDLWSRQRLKGLEQKIPSLVTYDNFAFLSKAISEIARTYHGGLSYVKAVNLPPGQEDSIHFWDLNDFWRHYKQVEEPVMI YATEQDPAVPYDLNAQMLLNKDLKVDSKNIRVVELPQGMHCTLPIPYDWSALTSLFQSYILSHSPNFKMTEQKLEMDLSD EEWTGFFDSGSRVKFEVEEPGKKQGFVTVGLEVENAKGKTKSMSLSLPLSQFDFRFFNKDMTGSEQEMIVRWLNQNLKVR IDQSKGKALLVASWPVAL
Sequences:
>Translated_578_residues MVLFDHNGPMLQSWFSLFSVLLFSPQLYAESPQRAFMEQFQSSRISFPAEDSPLLGDSPGRYPEPLNFIMTNLISWIPTG EPKLMSSGCAPEVWAARMQDTRVQKSAQLQGALVQKYFQDCRSELETGDNGSLVNLRRMMTMKYDPQGHPFLRRVVVNLP GNVKLKGLLGLKGDMKRRPLVIVRLGIFSNVEDFKPERAWLMMLFEQSPFNVLMLENMSSPDFVANNSRFSFGGYDEGIQ NILVARLLQDPIEPLSQMVDSVHVFGISLGGHGVLYSSLLNKYNSPKRGPLINSFTALCPVVNLRSTMQSLTHSGVKSAF VDLWSRQRLKGLEQKIPSLVTYDNFAFLSKAISEIARTYHGGLSYVKAVNLPPGQEDSIHFWDLNDFWRHYKQVEEPVMI YATEQDPAVPYDLNAQMLLNKDLKVDSKNIRVVELPQGMHCTLPIPYDWSALTSLFQSYILSHSPNFKMTEQKLEMDLSD EEWTGFFDSGSRVKFEVEEPGKKQGFVTVGLEVENAKGKTKSMSLSLPLSQFDFRFFNKDMTGSEQEMIVRWLNQNLKVR IDQSKGKALLVASWPVAL >Mature_578_residues MVLFDHNGPMLQSWFSLFSVLLFSPQLYAESPQRAFMEQFQSSRISFPAEDSPLLGDSPGRYPEPLNFIMTNLISWIPTG EPKLMSSGCAPEVWAARMQDTRVQKSAQLQGALVQKYFQDCRSELETGDNGSLVNLRRMMTMKYDPQGHPFLRRVVVNLP GNVKLKGLLGLKGDMKRRPLVIVRLGIFSNVEDFKPERAWLMMLFEQSPFNVLMLENMSSPDFVANNSRFSFGGYDEGIQ NILVARLLQDPIEPLSQMVDSVHVFGISLGGHGVLYSSLLNKYNSPKRGPLINSFTALCPVVNLRSTMQSLTHSGVKSAF VDLWSRQRLKGLEQKIPSLVTYDNFAFLSKAISEIARTYHGGLSYVKAVNLPPGQEDSIHFWDLNDFWRHYKQVEEPVMI YATEQDPAVPYDLNAQMLLNKDLKVDSKNIRVVELPQGMHCTLPIPYDWSALTSLFQSYILSHSPNFKMTEQKLEMDLSD EEWTGFFDSGSRVKFEVEEPGKKQGFVTVGLEVENAKGKTKSMSLSLPLSQFDFRFFNKDMTGSEQEMIVRWLNQNLKVR IDQSKGKALLVASWPVAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65577; Mature: 65577
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLFDHNGPMLQSWFSLFSVLLFSPQLYAESPQRAFMEQFQSSRISFPAEDSPLLGDSPG CEEECCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC RYPEPLNFIMTNLISWIPTGEPKLMSSGCAPEVWAARMQDTRVQKSAQLQGALVQKYFQD CCCCHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CRSELETGDNGSLVNLRRMMTMKYDPQGHPFLRRVVVNLPGNVKLKGLLGLKGDMKRRPL HHHHHCCCCCCCEEEEEHHHEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCE VIVRLGIFSNVEDFKPERAWLMMLFEQSPFNVLMLENMSSPDFVANNSRFSFGGYDEGIQ EEEEECCCCCHHHCCCCHHHEEEEECCCCCEEEEEECCCCCCEEECCCEEECCCHHHHHH NILVARLLQDPIEPLSQMVDSVHVFGISLGGHGVLYSSLLNKYNSPKRGPLINSFTALCP HHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH VVNLRSTMQSLTHSGVKSAFVDLWSRQRLKGLEQKIPSLVTYDNFAFLSKAISEIARTYH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHH GGLSYVKAVNLPPGQEDSIHFWDLNDFWRHYKQVEEPVMIYATEQDPAVPYDLNAQMLLN CCCCEEEEECCCCCCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEC KDLKVDSKNIRVVELPQGMHCTLPIPYDWSALTSLFQSYILSHSPNFKMTEQKLEMDLSD CCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCC EEWTGFFDSGSRVKFEVEEPGKKQGFVTVGLEVENAKGKTKSMSLSLPLSQFDFRFFNKD CCCCCEECCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHCCC MTGSEQEMIVRWLNQNLKVRIDQSKGKALLVASWPVAL CCCCHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCC >Mature Secondary Structure MVLFDHNGPMLQSWFSLFSVLLFSPQLYAESPQRAFMEQFQSSRISFPAEDSPLLGDSPG CEEECCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC RYPEPLNFIMTNLISWIPTGEPKLMSSGCAPEVWAARMQDTRVQKSAQLQGALVQKYFQD CCCCHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CRSELETGDNGSLVNLRRMMTMKYDPQGHPFLRRVVVNLPGNVKLKGLLGLKGDMKRRPL HHHHHCCCCCCCEEEEEHHHEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCE VIVRLGIFSNVEDFKPERAWLMMLFEQSPFNVLMLENMSSPDFVANNSRFSFGGYDEGIQ EEEEECCCCCHHHCCCCHHHEEEEECCCCCEEEEEECCCCCCEEECCCEEECCCHHHHHH NILVARLLQDPIEPLSQMVDSVHVFGISLGGHGVLYSSLLNKYNSPKRGPLINSFTALCP HHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH VVNLRSTMQSLTHSGVKSAFVDLWSRQRLKGLEQKIPSLVTYDNFAFLSKAISEIARTYH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHH GGLSYVKAVNLPPGQEDSIHFWDLNDFWRHYKQVEEPVMIYATEQDPAVPYDLNAQMLLN CCCCEEEEECCCCCCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEC KDLKVDSKNIRVVELPQGMHCTLPIPYDWSALTSLFQSYILSHSPNFKMTEQKLEMDLSD CCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCC EEWTGFFDSGSRVKFEVEEPGKKQGFVTVGLEVENAKGKTKSMSLSLPLSQFDFRFFNKD CCCCCEECCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHCCC MTGSEQEMIVRWLNQNLKVRIDQSKGKALLVASWPVAL CCCCHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA