Click here to switch to the map view.

The map label for this gene is ybjY [C]

Identifier: 42522294

GI number: 42522294

Start: 666557

End: 667522

Strand: Direct

Name: ybjY [C]

Synonym: Bd0708

Alternate gene names: 42522294

Gene position: 666557-667522 (Clockwise)

Preceding gene: 42522293

Following gene: 42522295

Centisome position: 17.62

GC content: 54.55

Gene sequence:

>966_bases
ATGAAATCATCAACCAAGAAACTAAGCTGGATCCTGGGGGGCCTTGTCGTCGTTGTCGCTGCGGGCTTTTACCTTTGGAA
AAAGGAAGATGGCAATGCGCCGGCCTTTCGTGAAATCCCGGTCACCGCAGGTGATTTGGACGTGACGATTCTTTCCACGG
GCACGGTGCAACCGAAAAACCGCCTTGAAATCAAAGCTCCGGTTGCGGGCCGCATTGAACAGATTCTGGCCAAAGAGGGC
CAGCAGATCCGCAAGGGTCAGATCCTGGCCTGGATGAGTTCCACCGAACGAGCCGCCATGTTGGACGCCGCCCGCGCACA
AGGGGCGGCAGAGTACAAAAAATGGTCGGAACTTTATCTGGCAACGCCGGTGATTGCGCCGATTGCAGGAACTTTGATTC
TGAAAAACGTCGAACCCGGCCAGACCTTCACCAACACCGATGCCATTTTTGTGATGTCCGACCGTTTGACGGTGAAAGCA
CAGGTGGATGAAACGGATATCGCACAAATCAAGCTGAAGGAAAAGGCGACCATCGTTCTGGATGCGTATCCGCAAAGCCC
ATTGCCCGCGACCGTGGATCAGATCGCCTTTGATGCGACCACGGTTAATAACGTCACCACTTATCTGGTGGATGTGATCC
CGGACAAAACCCCGGACTTCATGCGAAGCGGGATGACGGCGAATGTGACTTTTACGATCGCTTCAAAGAAGGGTATTTTG
CTGGTGCCAAGTGAAGCCTTGCGTGTCAGTCAGGGGCGCACCGAAGTTCTGGTGAAAGTACCAGGCTCCAAGCCTGCTCT
GCGTGAAGTTCGCACGGGCATCACCGATGGTCGCAATACCGAAGTGGTGGAAGGCTTGGATGAAGGTGATGTGGTTTTGG
TGACTCAGTTCAAGCTGGGCGAAAAATCTGCCGGTGGTTCCAATCCATTTGGTCCGCCGTCAACTCCACGCCGGGGCCGC
CAATGA

Upstream 100 bases:

>100_bases
ATGATCTGATTTCCTATCAAAAGGATCAGACCTTAAAACGCCGTGATCGGGTGGTGGCGGAAGCCAACTGGGAAAAAACA
CAAGGTGTAGGAGTGCTGCC

Downstream 100 bases:

>100_bases
TCGATATCAAAGGCATACGTAAATCCTATCAGATGGGCGACACGAAAGTGGACGTTCTGAAGGGCATCAGTCTGAAGATT
GAGCGGGGGGATTTCGTGGC

Product: macrolide-specific efflux protein

Products: NA

Alternate protein names: RND Family Efflux Transporter MFP Subunit; Secretion Protein HlyD; Membrane Fusion Protein; Periplasmic Component Of Efflux System; Membrane-Fusion Protein; Efflux Transporter Rnd Family Mfp Subunit; Macrolide-Specific Efflux Protein; HlyD Family Secretion Protein; Biotin/Lipoyl Attachment Domain-Containing Protein; Macrolide-Specific Efflux Protein MacA; Membrane Permease Cation Efflux Pumps; Protein Secretion Protein HylD Family; Permease; ABC-Type Macrolide Exporter Membrane Component; Efflux Transporter; RND Family Efflux Transporter Subunit MFP; RND-Type Efflux Transporter Membrane-Fusion Protein; Membrane Fusion Protein HlyD Family; Transmembrane Efflux Protein; RND Efflux Transporter; ABC Transporter ; Macrolide-Specific Efflux Protein Maca; Multidrug Efflux System Transmembrane Protein; RND Family Efflux Pump Membrane Fusion Protein

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MKSSTKKLSWILGGLVVVVAAGFYLWKKEDGNAPAFREIPVTAGDLDVTILSTGTVQPKNRLEIKAPVAGRIEQILAKEG
QQIRKGQILAWMSSTERAAMLDAARAQGAAEYKKWSELYLATPVIAPIAGTLILKNVEPGQTFTNTDAIFVMSDRLTVKA
QVDETDIAQIKLKEKATIVLDAYPQSPLPATVDQIAFDATTVNNVTTYLVDVIPDKTPDFMRSGMTANVTFTIASKKGIL
LVPSEALRVSQGRTEVLVKVPGSKPALREVRTGITDGRNTEVVEGLDEGDVVLVTQFKLGEKSAGGSNPFGPPSTPRRGR
Q

Sequences:

>Translated_321_residues
MKSSTKKLSWILGGLVVVVAAGFYLWKKEDGNAPAFREIPVTAGDLDVTILSTGTVQPKNRLEIKAPVAGRIEQILAKEG
QQIRKGQILAWMSSTERAAMLDAARAQGAAEYKKWSELYLATPVIAPIAGTLILKNVEPGQTFTNTDAIFVMSDRLTVKA
QVDETDIAQIKLKEKATIVLDAYPQSPLPATVDQIAFDATTVNNVTTYLVDVIPDKTPDFMRSGMTANVTFTIASKKGIL
LVPSEALRVSQGRTEVLVKVPGSKPALREVRTGITDGRNTEVVEGLDEGDVVLVTQFKLGEKSAGGSNPFGPPSTPRRGR
Q
>Mature_321_residues
MKSSTKKLSWILGGLVVVVAAGFYLWKKEDGNAPAFREIPVTAGDLDVTILSTGTVQPKNRLEIKAPVAGRIEQILAKEG
QQIRKGQILAWMSSTERAAMLDAARAQGAAEYKKWSELYLATPVIAPIAGTLILKNVEPGQTFTNTDAIFVMSDRLTVKA
QVDETDIAQIKLKEKATIVLDAYPQSPLPATVDQIAFDATTVNNVTTYLVDVIPDKTPDFMRSGMTANVTFTIASKKGIL
LVPSEALRVSQGRTEVLVKVPGSKPALREVRTGITDGRNTEVVEGLDEGDVVLVTQFKLGEKSAGGSNPFGPPSTPRRGR
Q

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34589; Mature: 34589

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSTKKLSWILGGLVVVVAAGFYLWKKEDGNAPAFREIPVTAGDLDVTILSTGTVQPKN
CCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEECCCCCCCEEEEEEECCCCCCCC
RLEIKAPVAGRIEQILAKEGQQIRKGQILAWMSSTERAAMLDAARAQGAAEYKKWSELYL
CEEEECCHHHHHHHHHHHCCCHHHCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHEE
ATPVIAPIAGTLILKNVEPGQTFTNTDAIFVMSDRLTVKAQVDETDIAQIKLKEKATIVL
ECCHHHHHCCEEEEECCCCCCCCCCCCEEEEEECCEEEEEECCCCCEEEEEEECCEEEEE
DAYPQSPLPATVDQIAFDATTVNNVTTYLVDVIPDKTPDFMRSGMTANVTFTIASKKGIL
ECCCCCCCCCCHHHHEECCEECCCCEEEEEEECCCCCHHHHHCCCEEEEEEEEECCCCEE
LVPSEALRVSQGRTEVLVKVPGSKPALREVRTGITDGRNTEVVEGLDEGDVVLVTQFKLG
EECHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEEEEECC
EKSAGGSNPFGPPSTPRRGRQ
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKSSTKKLSWILGGLVVVVAAGFYLWKKEDGNAPAFREIPVTAGDLDVTILSTGTVQPKN
CCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEECCCCCCCEEEEEEECCCCCCCC
RLEIKAPVAGRIEQILAKEGQQIRKGQILAWMSSTERAAMLDAARAQGAAEYKKWSELYL
CEEEECCHHHHHHHHHHHCCCHHHCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHEE
ATPVIAPIAGTLILKNVEPGQTFTNTDAIFVMSDRLTVKAQVDETDIAQIKLKEKATIVL
ECCHHHHHCCEEEEECCCCCCCCCCCCEEEEEECCEEEEEECCCCCEEEEEEECCEEEEE
DAYPQSPLPATVDQIAFDATTVNNVTTYLVDVIPDKTPDFMRSGMTANVTFTIASKKGIL
ECCCCCCCCCCHHHHEECCEECCCCEEEEEEECCCCCHHHHHCCCEEEEEEEEECCCCEE
LVPSEALRVSQGRTEVLVKVPGSKPALREVRTGITDGRNTEVVEGLDEGDVVLVTQFKLG
EECHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEEEEECC
EKSAGGSNPFGPPSTPRRGRQ
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA