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The map label for this gene is smpB

Identifier: 42522228

GI number: 42522228

Start: 594398

End: 594856

Strand: Direct

Name: smpB

Synonym: Bd0638

Alternate gene names: 42522228

Gene position: 594398-594856 (Clockwise)

Preceding gene: 42522227

Following gene: 42522229

Centisome position: 15.71

GC content: 47.93

Gene sequence:

>459_bases
ATGAGCGAAAACATCCTGATTGTTCATGAGAACAAAAAAGCACGCTTTGACTACACGATCGTGGAAACCTACGAGGCGGG
TCTGCAGCTTATGGGCAGCGAGGTGAAATCCCTGCGCAATAAGGATGTTCAGTTGAAGGATTCCTACATCTCTTTCAAAG
GGGATGAGGCGTACCTGCAAAACGCGCACATCGCGGAATACAAAGCTTCCAGTTACAACAATCACGTTCCGGAAAGACAT
CGCAAGCTTCTGATGCACAGAAATGAGCTGGACGAAATCTTCGAGGCTTTGCGTGAAAAAGGCTATTCCTGCGTGCCGCT
GAAGATCTACTTCAAAAACGGCCGCGCCAAACTTCAGATTGCATTGGTTAAGGGTAAAAAGACCCACGACAAGCGCGAGG
CGATCAAGAAACGCGACGTTTCTGATCAAATTCGTTCATCTCTGCGACGTTCAAGATAG

Upstream 100 bases:

>100_bases
CGGCTGGTTGGCCGAGCTGGGCTTTAAAGAAACGGCCCGTGCTGAGGAGCTTTCTCCGAAGCAGTTTGTGGCCCTGTATA
AGCATTTTGGATTTGAGTAA

Downstream 100 bases:

>100_bases
CGTCCGGAATGTCCGAAATCCAATAAATCGGACTGTAAAAAACTCAAAAAATGGATTTATCGCCCTCATTCCCTGTTTAA
ATGGATTTGAGGCCTGCTTT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MSENILIVHENKKARFDYTIVETYEAGLQLMGSEVKSLRNKDVQLKDSYISFKGDEAYLQNAHIAEYKASSYNNHVPERH
RKLLMHRNELDEIFEALREKGYSCVPLKIYFKNGRAKLQIALVKGKKTHDKREAIKKRDVSDQIRSSLRRSR

Sequences:

>Translated_152_residues
MSENILIVHENKKARFDYTIVETYEAGLQLMGSEVKSLRNKDVQLKDSYISFKGDEAYLQNAHIAEYKASSYNNHVPERH
RKLLMHRNELDEIFEALREKGYSCVPLKIYFKNGRAKLQIALVKGKKTHDKREAIKKRDVSDQIRSSLRRSR
>Mature_151_residues
SENILIVHENKKARFDYTIVETYEAGLQLMGSEVKSLRNKDVQLKDSYISFKGDEAYLQNAHIAEYKASSYNNHVPERHR
KLLMHRNELDEIFEALREKGYSCVPLKIYFKNGRAKLQIALVKGKKTHDKREAIKKRDVSDQIRSSLRRSR

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=132, Percent_Identity=44.6969696969697, Blast_Score=110, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_BDEBA (Q6MQ46)

Other databases:

- EMBL:   BX842647
- RefSeq:   NP_967608.1
- ProteinModelPortal:   Q6MQ46
- SMR:   Q6MQ46
- GeneID:   2734459
- GenomeReviews:   BX842601_GR
- KEGG:   bba:Bd0638
- NMPDR:   fig|264462.1.peg.578
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   BBAC264462:BD0638-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17827; Mature: 17695

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENILIVHENKKARFDYTIVETYEAGLQLMGSEVKSLRNKDVQLKDSYISFKGDEAYLQ
CCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCHHHHC
NAHIAEYKASSYNNHVPERHRKLLMHRNELDEIFEALREKGYSCVPLKIYFKNGRAKLQI
CCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEE
ALVKGKKTHDKREAIKKRDVSDQIRSSLRRSR
EEECCCCCCHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SENILIVHENKKARFDYTIVETYEAGLQLMGSEVKSLRNKDVQLKDSYISFKGDEAYLQ
CCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEECCCHHHHC
NAHIAEYKASSYNNHVPERHRKLLMHRNELDEIFEALREKGYSCVPLKIYFKNGRAKLQI
CCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEE
ALVKGKKTHDKREAIKKRDVSDQIRSSLRRSR
EEECCCCCCHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA