| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522208
Identifier: 42522208
GI number: 42522208
Start: 574695
End: 576203
Strand: Direct
Name: 42522208
Synonym: Bd0616
Alternate gene names: NA
Gene position: 574695-576203 (Clockwise)
Preceding gene: 42522207
Following gene: 42522209
Centisome position: 15.19
GC content: 49.5
Gene sequence:
>1509_bases ATGAAGATTCTGGTTGTCTCTCTTCTGAGGCTTGGTGACATCATCCAGCAGGAACCTCTGCTGCGCGGACTGCGGGAAAA ACATCCCACTGCCGAGATTCATCTGCTGATGAACCGTCAATTTGCAAATGTCGAACGCATCCTTCACGGCGTGGTGGATA AGTACATCCATTTTGACCGGGAAACTTTGCAACGGGGCTTGGGCGAGAGCGGCTTTAATATTCTGTATTCCTATTCTGTG CTGGAAGAACTTGTGCAATCGTTGAATGGCGAGAAGTACGATCTGGCTTATAATTTTACGCACAATAGGCTGAGTGCCTA TTTGCTGGGGGCTTTGGAAATCCCGGAAAAGCGCGGTCTTCATCAAGAAGACGGCCGCTTCCGTGGTATGGACAACCGCT GGCTTAAGTACTTTAACGACCGTTTTTCAGGAAGCCAAAAGTCTCTGTTCCATTATGTGGAGCTTTTGGGCAATTCCTTC AACCTTCCGGTTCGCCCTCAGGCGGCCGGGGTTCGCAAGAAAAGCAAATCCATTTTGTTCCAGTGTCTGACCAGTCAGAC TGCGAAAAACTGGGGCCTGGATAATTTCGTTCAGCTGAAAAGAACCATTGAAATGGCCCTCGTGGATTACAAGGTTCAGA TTCTTGGGGCACCGTTTGAACGGGAGACTTTGTTAACTGCATTTTCTGAAAAAGATCTTTTGATCTGCGATCTATCTGAA GCCCGCAAACATCTGCAAGACTGTGCTTTGCTGGTCACCGGCGACACCAGTATCAAACATCTGGCGGCGCAAATGGGCGT TCCTTTGGTGGAACTGGTTCTGGGCACCAGCGATGCCGTGAAGACCGGTGCATTTTCTGAAAACGCAAGAATCCTGACTG AAGACATCACCGTCGAGCGCGTGTTTGGTGAAGTCTGGGATGAACTCAGTGGTGAATCCAAAAACATTGAAAACACCGCA GGCTCTTTGGAGCGAGTGACTTGGAAGCTCTATTTGGATAAAGGCTCCCGAGATGCAGAGCCGGCGTATGTCGCGGCTTT GCAACAGCTCTTGGATTCTCATCCGGAAAAGAACCTGTTGCAGGCTTTGTCCGGCTATCAGGAAAAGACGCAAGTTTATC TTTCCTGGCAAAAACGCATCATCGCGGCGCTACCGTCGCGGGAAGTGCTGGCCAGCCGCAAGGCGGTTTCGGCAAACGAT GTGGCTGAACTGATTTTGGTGGCTCAGGATATAATTAAAAGTAAAAAAGATGACGCGGGTTATTTCCAGGGGTTCGTAGA GTCCCTGTTGGCCCGGTATTCACAGGCGACCCAGATTCTGGATCGCGTGCAGGCGGACCTGGAAGATCAAGCCGAGCTTC TGGCAATTCGTGAAACATTGACTCGTCATTTGCAATCTCTCTCCATGGAAGGAGCGTACTATGCAAAAGGAATTGGACAA CTATCTATCAGTGGCTTTGAAGAGACTGGAAAAAGCCTACAGCGAGATCTTGAAGACGCAAAGTTATAG
Upstream 100 bases:
>100_bases GTTGTTGTCCATCAACGATGTGATTCCGGTGATAGAGGCTTCTGCGATGCCTGAAACTAATAAACAGATTTTCCGCGTGC TCGGTGAATTGGTGAAATAA
Downstream 100 bases:
>100_bases TAAGGAAGCTGAAAAAGTTCAGTTGTTGAAAGAACTCGTCAAGGAACAGATTAAAAATGAAAATACTCATCCTGCAACTC GCTAGGCTCGGGGATATCTA
Product: putative lipopolysaccharide heptosyltransferase-I
Products: NA
Alternate protein names: Lipopolysaccharide Biosynthesis Protein; Lipopolysaccharide Heptosyltransferase
Number of amino acids: Translated: 502; Mature: 502
Protein sequence:
>502_residues MKILVVSLLRLGDIIQQEPLLRGLREKHPTAEIHLLMNRQFANVERILHGVVDKYIHFDRETLQRGLGESGFNILYSYSV LEELVQSLNGEKYDLAYNFTHNRLSAYLLGALEIPEKRGLHQEDGRFRGMDNRWLKYFNDRFSGSQKSLFHYVELLGNSF NLPVRPQAAGVRKKSKSILFQCLTSQTAKNWGLDNFVQLKRTIEMALVDYKVQILGAPFERETLLTAFSEKDLLICDLSE ARKHLQDCALLVTGDTSIKHLAAQMGVPLVELVLGTSDAVKTGAFSENARILTEDITVERVFGEVWDELSGESKNIENTA GSLERVTWKLYLDKGSRDAEPAYVAALQQLLDSHPEKNLLQALSGYQEKTQVYLSWQKRIIAALPSREVLASRKAVSAND VAELILVAQDIIKSKKDDAGYFQGFVESLLARYSQATQILDRVQADLEDQAELLAIRETLTRHLQSLSMEGAYYAKGIGQ LSISGFEETGKSLQRDLEDAKL
Sequences:
>Translated_502_residues MKILVVSLLRLGDIIQQEPLLRGLREKHPTAEIHLLMNRQFANVERILHGVVDKYIHFDRETLQRGLGESGFNILYSYSV LEELVQSLNGEKYDLAYNFTHNRLSAYLLGALEIPEKRGLHQEDGRFRGMDNRWLKYFNDRFSGSQKSLFHYVELLGNSF NLPVRPQAAGVRKKSKSILFQCLTSQTAKNWGLDNFVQLKRTIEMALVDYKVQILGAPFERETLLTAFSEKDLLICDLSE ARKHLQDCALLVTGDTSIKHLAAQMGVPLVELVLGTSDAVKTGAFSENARILTEDITVERVFGEVWDELSGESKNIENTA GSLERVTWKLYLDKGSRDAEPAYVAALQQLLDSHPEKNLLQALSGYQEKTQVYLSWQKRIIAALPSREVLASRKAVSAND VAELILVAQDIIKSKKDDAGYFQGFVESLLARYSQATQILDRVQADLEDQAELLAIRETLTRHLQSLSMEGAYYAKGIGQ LSISGFEETGKSLQRDLEDAKL >Mature_502_residues MKILVVSLLRLGDIIQQEPLLRGLREKHPTAEIHLLMNRQFANVERILHGVVDKYIHFDRETLQRGLGESGFNILYSYSV LEELVQSLNGEKYDLAYNFTHNRLSAYLLGALEIPEKRGLHQEDGRFRGMDNRWLKYFNDRFSGSQKSLFHYVELLGNSF NLPVRPQAAGVRKKSKSILFQCLTSQTAKNWGLDNFVQLKRTIEMALVDYKVQILGAPFERETLLTAFSEKDLLICDLSE ARKHLQDCALLVTGDTSIKHLAAQMGVPLVELVLGTSDAVKTGAFSENARILTEDITVERVFGEVWDELSGESKNIENTA GSLERVTWKLYLDKGSRDAEPAYVAALQQLLDSHPEKNLLQALSGYQEKTQVYLSWQKRIIAALPSREVLASRKAVSAND VAELILVAQDIIKSKKDDAGYFQGFVESLLARYSQATQILDRVQADLEDQAELLAIRETLTRHLQSLSMEGAYYAKGIGQ LSISGFEETGKSLQRDLEDAKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56626; Mature: 56626
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKILVVSLLRLGDIIQQEPLLRGLREKHPTAEIHLLMNRQFANVERILHGVVDKYIHFDR CHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCH ETLQRGLGESGFNILYSYSVLEELVQSLNGEKYDLAYNFTHNRLSAYLLGALEIPEKRGL HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCHHCCC HQEDGRFRGMDNRWLKYFNDRFSGSQKSLFHYVELLGNSFNLPVRPQAAGVRKKSKSILF CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHCHHHHHHHHHH QCLTSQTAKNWGLDNFVQLKRTIEMALVDYKVQILGAPFERETLLTAFSEKDLLICDLSE HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCEEEEEHHH ARKHLQDCALLVTGDTSIKHLAAQMGVPLVELVLGTSDAVKTGAFSENARILTEDITVER HHHHHHHCEEEEECCHHHHHHHHHHCCHHHHHHHCCCHHHHCCCCCCCCEEEEHHHHHHH VFGEVWDELSGESKNIENTAGSLERVTWKLYLDKGSRDAEPAYVAALQQLLDSHPEKNLL HHHHHHHHHCCCCCCCHHHHCHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHH QALSGYQEKTQVYLSWQKRIIAALPSREVLASRKAVSANDVAELILVAQDIIKSKKDDAG HHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHH YFQGFVESLLARYSQATQILDRVQADLEDQAELLAIRETLTRHLQSLSMEGAYYAKGIGQ HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC LSISGFEETGKSLQRDLEDAKL EEECCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKILVVSLLRLGDIIQQEPLLRGLREKHPTAEIHLLMNRQFANVERILHGVVDKYIHFDR CHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCH ETLQRGLGESGFNILYSYSVLEELVQSLNGEKYDLAYNFTHNRLSAYLLGALEIPEKRGL HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCHHCCC HQEDGRFRGMDNRWLKYFNDRFSGSQKSLFHYVELLGNSFNLPVRPQAAGVRKKSKSILF CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHCHHHHHHHHHH QCLTSQTAKNWGLDNFVQLKRTIEMALVDYKVQILGAPFERETLLTAFSEKDLLICDLSE HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCEEEEEHHH ARKHLQDCALLVTGDTSIKHLAAQMGVPLVELVLGTSDAVKTGAFSENARILTEDITVER HHHHHHHCEEEEECCHHHHHHHHHHCCHHHHHHHCCCHHHHCCCCCCCCEEEEHHHHHHH VFGEVWDELSGESKNIENTAGSLERVTWKLYLDKGSRDAEPAYVAALQQLLDSHPEKNLL HHHHHHHHHCCCCCCCHHHHCHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHH QALSGYQEKTQVYLSWQKRIIAALPSREVLASRKAVSANDVAELILVAQDIIKSKKDDAG HHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHH YFQGFVESLLARYSQATQILDRVQADLEDQAELLAIRETLTRHLQSLSMEGAYYAKGIGQ HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC LSISGFEETGKSLQRDLEDAKL EEECCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA