| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522193
Identifier: 42522193
GI number: 42522193
Start: 557561
End: 558634
Strand: Direct
Name: 42522193
Synonym: Bd0600
Alternate gene names: NA
Gene position: 557561-558634 (Clockwise)
Preceding gene: 42522192
Following gene: 42522194
Centisome position: 14.74
GC content: 54.56
Gene sequence:
>1074_bases TTGCCAAGGCCCAGAGCCTTTGTTACTTCCAGCTGCATGAAAAAAATCGCTCTGTTCATTTCAGTTCTTCTGGTATCACT GACAGCCGCGGCAAAGGTTCAGCATCTTCGTTTGGGAACCGGCAAGGTGATTGCCTATGAGCACATCCAAACCAACAAAG CCTCTTCGACATTGATTTTACTTCCTGGGGTCAATCGCTCCCTCAGCGCCGACGATCGCTCCGTGCAACTGCTGGCAGAG CAGGGCTGGAATTTGTTGTTGCCGTCACTTCCTGCGCATCCGCTTTCCATTGAGGGGCTTTCCGCGGGTGAAACGCCGTA CTTCTTGTATGACTCTTCACTTCGCGCAGTGGATTTCGCCTCGGACATTGAAAAGCTTGTCGCGGCTTTGAAAATCAAAC AGGCCATTCCGGTGACGTTGTCTTACACGTCAACTGTGGGTGCTTACTTGAATCCAAAACTTTTTCCGCATGTGATTGAA ACAGTGCCGTTGGGCATCCCCACGGAAACAAATCCTGAAGCCGCCCGCAATGCCCAGCTGTGGGAAAACTGGCTGCGTAT GAATCCGGTGATGGCTCCCTTTTGGATTCGTCAGTCCCGCGACCAGGCATACAGCAAACACTGGGGGGCGGTGGTGGATG CGAACCTTGCCAGGGATCCGGACTATTACGGGGCAAATCCGCGCATCGCGGATATCAAGTCGGGATATGTGACGATTGCC CGGGCCGCCGAGGACTTTGATCTGACGAAGGTGGATTATAAGGCGAACGCTGTGACTCGGGACTTTGTTCTGGCGGGTCA GGAAAATTCAGAACGTCTAAAAAATCAGATTGTGGCTTTGAAGAACTATCTGCGCTCGGGAAAACCCGCGCGTGTGATGG TGGTGGCGAATGCGGGGCATGTGCTGCCGTCGGAGTCTCCGTCAGTGTATGCGGCGGCGATCGGGGTGCTGGCGCAGCAG CCTGTGTCTGCGGGAGTGTCGTTCATGGTTGTGCGCAAGGCTGCGGATGTGCACAAAGCCCAGTGGCAGGGGGCTTCGGA ATTGGAAGCCTGGATGGATGGGATCGTGAAATAG
Upstream 100 bases:
>100_bases AGAAGCGGCCCGTGCGCGCGAGCGCCGAGGTTTCCCAGGACTTAAAAAGTCCATTCTGGAAGAGCAGCAAGAATAGCATA AAAGCTCTATTTTTTAGCTG
Downstream 100 bases:
>100_bases CGGCTTTAAATGTCGCTGTGTCAAAGTGATACACAGTTTATTCTGCTGAAATCGTTTATATTGCATTTTGACTAGCATCG AAATTGCTGAATGAAGACCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 357; Mature: 356
Protein sequence:
>357_residues MPRPRAFVTSSCMKKIALFISVLLVSLTAAAKVQHLRLGTGKVIAYEHIQTNKASSTLILLPGVNRSLSADDRSVQLLAE QGWNLLLPSLPAHPLSIEGLSAGETPYFLYDSSLRAVDFASDIEKLVAALKIKQAIPVTLSYTSTVGAYLNPKLFPHVIE TVPLGIPTETNPEAARNAQLWENWLRMNPVMAPFWIRQSRDQAYSKHWGAVVDANLARDPDYYGANPRIADIKSGYVTIA RAAEDFDLTKVDYKANAVTRDFVLAGQENSERLKNQIVALKNYLRSGKPARVMVVANAGHVLPSESPSVYAAAIGVLAQQ PVSAGVSFMVVRKAADVHKAQWQGASELEAWMDGIVK
Sequences:
>Translated_357_residues MPRPRAFVTSSCMKKIALFISVLLVSLTAAAKVQHLRLGTGKVIAYEHIQTNKASSTLILLPGVNRSLSADDRSVQLLAE QGWNLLLPSLPAHPLSIEGLSAGETPYFLYDSSLRAVDFASDIEKLVAALKIKQAIPVTLSYTSTVGAYLNPKLFPHVIE TVPLGIPTETNPEAARNAQLWENWLRMNPVMAPFWIRQSRDQAYSKHWGAVVDANLARDPDYYGANPRIADIKSGYVTIA RAAEDFDLTKVDYKANAVTRDFVLAGQENSERLKNQIVALKNYLRSGKPARVMVVANAGHVLPSESPSVYAAAIGVLAQQ PVSAGVSFMVVRKAADVHKAQWQGASELEAWMDGIVK >Mature_356_residues PRPRAFVTSSCMKKIALFISVLLVSLTAAAKVQHLRLGTGKVIAYEHIQTNKASSTLILLPGVNRSLSADDRSVQLLAEQ GWNLLLPSLPAHPLSIEGLSAGETPYFLYDSSLRAVDFASDIEKLVAALKIKQAIPVTLSYTSTVGAYLNPKLFPHVIET VPLGIPTETNPEAARNAQLWENWLRMNPVMAPFWIRQSRDQAYSKHWGAVVDANLARDPDYYGANPRIADIKSGYVTIAR AAEDFDLTKVDYKANAVTRDFVLAGQENSERLKNQIVALKNYLRSGKPARVMVVANAGHVLPSESPSVYAAAIGVLAQQP VSAGVSFMVVRKAADVHKAQWQGASELEAWMDGIVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38973; Mature: 38842
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRPRAFVTSSCMKKIALFISVLLVSLTAAAKVQHLRLGTGKVIAYEHIQTNKASSTLIL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEECCCCCCEEEE LPGVNRSLSADDRSVQLLAEQGWNLLLPSLPAHPLSIEGLSAGETPYFLYDSSLRAVDFA ECCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHH SDIEKLVAALKIKQAIPVTLSYTSTVGAYLNPKLFPHVIETVPLGIPTETNPEAARNAQL HHHHHHHHHHHHHHCCCEEEEECCHHCHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH WENWLRMNPVMAPFWIRQSRDQAYSKHWGAVVDANLARDPDYYGANPRIADIKSGYVTIA HHHHHHCCCCCCHHHHHCCHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEECCCCEEEEE RAAEDFDLTKVDYKANAVTRDFVLAGQENSERLKNQIVALKNYLRSGKPARVMVVANAGH ECCCCCCCEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC VLPSESPSVYAAAIGVLAQQPVSAGVSFMVVRKAADVHKAQWQGASELEAWMDGIVK CCCCCCCCHHHHHHHHHHHCHHHCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHCC >Mature Secondary Structure PRPRAFVTSSCMKKIALFISVLLVSLTAAAKVQHLRLGTGKVIAYEHIQTNKASSTLIL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEECCCCCCEEEE LPGVNRSLSADDRSVQLLAEQGWNLLLPSLPAHPLSIEGLSAGETPYFLYDSSLRAVDFA ECCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCEECCCCCCCCCEEEECCCCCCHHHH SDIEKLVAALKIKQAIPVTLSYTSTVGAYLNPKLFPHVIETVPLGIPTETNPEAARNAQL HHHHHHHHHHHHHHCCCEEEEECCHHCHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH WENWLRMNPVMAPFWIRQSRDQAYSKHWGAVVDANLARDPDYYGANPRIADIKSGYVTIA HHHHHHCCCCCCHHHHHCCHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEECCCCEEEEE RAAEDFDLTKVDYKANAVTRDFVLAGQENSERLKNQIVALKNYLRSGKPARVMVVANAGH ECCCCCCCEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC VLPSESPSVYAAAIGVLAQQPVSAGVSFMVVRKAADVHKAQWQGASELEAWMDGIVK CCCCCCCCHHHHHHHHHHHCHHHCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA