| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is cheB [H]
Identifier: 42522175
GI number: 42522175
Start: 537923
End: 539485
Strand: Direct
Name: cheB [H]
Synonym: Bd0580
Alternate gene names: 42522175
Gene position: 537923-539485 (Clockwise)
Preceding gene: 42522174
Following gene: 42522176
Centisome position: 14.22
GC content: 55.09
Gene sequence:
>1563_bases TTGATGAACACTCATTATCTTTTTCCCGGTAAGCTGGCGGCCTTCAAAGAAGAGACCGTGATTTCCACTTTGCTGGGCTC TTGCGTGGCGGTGGCTTTGCATGACCCCACAACCCGCATCGGCGGCTTGAATCACTATCTGCTTGCCGATGGCATGCCGG ACGAACGCGAGAACACGCGCTATGGGGCGCATGCCATTCCGTTGCTGATTGAAGAGTGTGTTCATCTGGGAGCCAATCGC GGCCGCCTGCAGGCCAAGATTTACGGCGGCGGGAATGTGATCAGTGTTTCCCAGATTGGGGAAGGCATTGGCAAGCGCAA CATCGAGTTCGCGGAAAAGATCCTGCGTGATCACGGCATTCCGATCCTGGAAAGAAATGTCGCCGGTGAATCGGCGCGCA CAATTAAAATGAACACGGCCACTTTTGAAGTGCTGCACAACTCCTCGCAAGGGGGCAGTGTTGATAAACCTGTGGATGTC TCGGGCTTCAGACCCTTGGCTGTGGCCAAAAGCGTGAAGGTTCTGGTCGTCGATGACTCGGCAACCGTGCGAACTCTGTT CACGAATATCTTCACCAAAAGCGGACTGGAAGTTGTCGGTTCTGCGGCGGACGCCTATCAGGCGCGTGAAATGATTTTGA GCAAGAAACCCGACGTTCTGACTCTGGACATCGAGATGCCGAAGATGTCGGGTGTGATGTTCCTGGAAAAGCTGATGAAG CATCACCCGATCCCGGTGGTGATGGTTTCCTCTTTGGCCAGTACCGGTGAAGCGGCGATGAAATCCCTGGAGCTGGGTGC TGTGGAGTTCGTGCACAAGCCTTCGCAGTTTGACCCGGCGGTTTTAAAGGACCTGGCGGGAATGCTGGTGGACAAAGTCC GCGCGGCGGCTTCGGTGAATATTTTGAAGAAACTTAAAGAGACTCCGGCCCCTCAGGAAATCAAGACCACCACCTTTGCG ACTCCGACCCGTCGTCGTGCGGCTGAGTTGAAAGTGGTGGTGCTGGGCGGAAATGCCGGCAGTGCGGAAGCGCTGGAAAA GTTTGTCAAAGGCCTTGCGGCGGACACGCCTCCGGTGGTGGTGGCCTGCAGTACGGTGGCGAACTTTGTGACGGCTTTCA TCAGCAAGCTGAAGGTGGGATCCAAAGTCACGCCGGTGGTGGGTAAAGACGGTGATTTCCTCAGAATGGGGCATGTTTAT TTTGTGCCAGCCGAACACCATGGGAAAATCGTCACCGGTCCTCAGGGACCCGTGCTGAATCTTTCCAAAGGAGCTCCGGT TTCCTCACAATTGCCTTCGGCGAACGTGCTTTTCAACTCGGCGGCGCAGTCTTATGGGCAGGGTGTTTATGCCCTGCTGT TGGGTGGGTTTGGCACCGACGGAGTCGATGGACTGGTGGAAGTGCAAAAACGCGGTGGCGCCAGCGTGGTGCAGCACCCG GAAGAAGCTCAATTTCCCTATGCTCCTCAAAAAGCGATTGAACTGGGAGTGGCGGATGAGATACTTAAAGCCGACATGTT GGCGCATCACCTGATGCAGTATCGAAACCAAAACTTATACTAG
Upstream 100 bases:
>100_bases TTGAAAACCAATCCTCCATGATGTCTGCGAACTTTGTTCACCAGTTTTTCATCAAAGACCGCCGCAGTATCATGGTTCTG GATCTTGAAAAACTGGTGGC
Downstream 100 bases:
>100_bases GATCTTCGTTGGAACTGCAAAATTTTATCGGAGGGGCCTTTGTCCCTTCCGACAGTCAGAAAACCTTCGCAAAAATTTCT CCTTTTGATGGCACGGAACT
Product: cheB, glutamate methylesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 520; Mature: 520
Protein sequence:
>520_residues MMNTHYLFPGKLAAFKEETVISTLLGSCVAVALHDPTTRIGGLNHYLLADGMPDERENTRYGAHAIPLLIEECVHLGANR GRLQAKIYGGGNVISVSQIGEGIGKRNIEFAEKILRDHGIPILERNVAGESARTIKMNTATFEVLHNSSQGGSVDKPVDV SGFRPLAVAKSVKVLVVDDSATVRTLFTNIFTKSGLEVVGSAADAYQAREMILSKKPDVLTLDIEMPKMSGVMFLEKLMK HHPIPVVMVSSLASTGEAAMKSLELGAVEFVHKPSQFDPAVLKDLAGMLVDKVRAAASVNILKKLKETPAPQEIKTTTFA TPTRRRAAELKVVVLGGNAGSAEALEKFVKGLAADTPPVVVACSTVANFVTAFISKLKVGSKVTPVVGKDGDFLRMGHVY FVPAEHHGKIVTGPQGPVLNLSKGAPVSSQLPSANVLFNSAAQSYGQGVYALLLGGFGTDGVDGLVEVQKRGGASVVQHP EEAQFPYAPQKAIELGVADEILKADMLAHHLMQYRNQNLY
Sequences:
>Translated_520_residues MMNTHYLFPGKLAAFKEETVISTLLGSCVAVALHDPTTRIGGLNHYLLADGMPDERENTRYGAHAIPLLIEECVHLGANR GRLQAKIYGGGNVISVSQIGEGIGKRNIEFAEKILRDHGIPILERNVAGESARTIKMNTATFEVLHNSSQGGSVDKPVDV SGFRPLAVAKSVKVLVVDDSATVRTLFTNIFTKSGLEVVGSAADAYQAREMILSKKPDVLTLDIEMPKMSGVMFLEKLMK HHPIPVVMVSSLASTGEAAMKSLELGAVEFVHKPSQFDPAVLKDLAGMLVDKVRAAASVNILKKLKETPAPQEIKTTTFA TPTRRRAAELKVVVLGGNAGSAEALEKFVKGLAADTPPVVVACSTVANFVTAFISKLKVGSKVTPVVGKDGDFLRMGHVY FVPAEHHGKIVTGPQGPVLNLSKGAPVSSQLPSANVLFNSAAQSYGQGVYALLLGGFGTDGVDGLVEVQKRGGASVVQHP EEAQFPYAPQKAIELGVADEILKADMLAHHLMQYRNQNLY >Mature_520_residues MMNTHYLFPGKLAAFKEETVISTLLGSCVAVALHDPTTRIGGLNHYLLADGMPDERENTRYGAHAIPLLIEECVHLGANR GRLQAKIYGGGNVISVSQIGEGIGKRNIEFAEKILRDHGIPILERNVAGESARTIKMNTATFEVLHNSSQGGSVDKPVDV SGFRPLAVAKSVKVLVVDDSATVRTLFTNIFTKSGLEVVGSAADAYQAREMILSKKPDVLTLDIEMPKMSGVMFLEKLMK HHPIPVVMVSSLASTGEAAMKSLELGAVEFVHKPSQFDPAVLKDLAGMLVDKVRAAASVNILKKLKETPAPQEIKTTTFA TPTRRRAAELKVVVLGGNAGSAEALEKFVKGLAADTPPVVVACSTVANFVTAFISKLKVGSKVTPVVGKDGDFLRMGHVY FVPAEHHGKIVTGPQGPVLNLSKGAPVSSQLPSANVLFNSAAQSYGQGVYALLLGGFGTDGVDGLVEVQKRGGASVVQHP EEAQFPYAPQKAIELGVADEILKADMLAHHLMQYRNQNLY
Specific function: Involved in the modulation of the chemotaxis system; catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR [H]
COG id: COG2201
COG function: function code NT; Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788192, Length=343, Percent_Identity=31.1953352769679, Blast_Score=174, Evalue=1e-44, Organism=Escherichia coli, GI1790299, Length=108, Percent_Identity=32.4074074074074, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR008248 - InterPro: IPR000673 - InterPro: IPR001789 [H]
Pfam domain/function: PF01339 CheB_methylest; PF00072 Response_reg [H]
EC number: =3.1.1.61 [H]
Molecular weight: Translated: 55513; Mature: 55513
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50122 CHEB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNTHYLFPGKLAAFKEETVISTLLGSCVAVALHDPTTRIGGLNHYLLADGMPDERENTR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCHHHCCCCEEEEECCCCCCCCCCC YGAHAIPLLIEECVHLGANRGRLQAKIYGGGNVISVSQIGEGIGKRNIEFAEKILRDHGI CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEHHHHHCCCCCCCHHHHHHHHHHCCC PILERNVAGESARTIKMNTATFEVLHNSSQGGSVDKPVDVSGFRPLAVAKSVKVLVVDDS CEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHEECCCEEEEEEECC ATVRTLFTNIFTKSGLEVVGSAADAYQAREMILSKKPDVLTLDIEMPKMSGVMFLEKLMK HHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH HHPIPVVMVSSLASTGEAAMKSLELGAVEFVHKPSQFDPAVLKDLAGMLVDKVRAAASVN HCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ILKKLKETPAPQEIKTTTFATPTRRRAAELKVVVLGGNAGSAEALEKFVKGLAADTPPVV HHHHHHHCCCCCCCCCCCCCCCCHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCEE VACSTVANFVTAFISKLKVGSKVTPVVGKDGDFLRMGHVYFVPAEHHGKIVTGPQGPVLN EEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEEEECCCCCEEEECCCCCEEE LSKGAPVSSQLPSANVLFNSAAQSYGQGVYALLLGGFGTDGVDGLVEVQKRGGASVVQHP CCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCHHHCCC EEAQFPYAPQKAIELGVADEILKADMLAHHLMQYRNQNLY CCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MMNTHYLFPGKLAAFKEETVISTLLGSCVAVALHDPTTRIGGLNHYLLADGMPDERENTR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCHHHCCCCEEEEECCCCCCCCCCC YGAHAIPLLIEECVHLGANRGRLQAKIYGGGNVISVSQIGEGIGKRNIEFAEKILRDHGI CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEHHHHHCCCCCCCHHHHHHHHHHCCC PILERNVAGESARTIKMNTATFEVLHNSSQGGSVDKPVDVSGFRPLAVAKSVKVLVVDDS CEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHEECCCEEEEEEECC ATVRTLFTNIFTKSGLEVVGSAADAYQAREMILSKKPDVLTLDIEMPKMSGVMFLEKLMK HHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH HHPIPVVMVSSLASTGEAAMKSLELGAVEFVHKPSQFDPAVLKDLAGMLVDKVRAAASVN HCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ILKKLKETPAPQEIKTTTFATPTRRRAAELKVVVLGGNAGSAEALEKFVKGLAADTPPVV HHHHHHHCCCCCCCCCCCCCCCCHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCEE VACSTVANFVTAFISKLKVGSKVTPVVGKDGDFLRMGHVYFVPAEHHGKIVTGPQGPVLN EEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEEEECCCCCEEEECCCCCEEE LSKGAPVSSQLPSANVLFNSAAQSYGQGVYALLLGGFGTDGVDGLVEVQKRGGASVVQHP CCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCHHHCCC EEAQFPYAPQKAIELGVADEILKADMLAHHLMQYRNQNLY CCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA