| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522169
Identifier: 42522169
GI number: 42522169
Start: 529926
End: 530951
Strand: Direct
Name: 42522169
Synonym: Bd0573
Alternate gene names: NA
Gene position: 529926-530951 (Clockwise)
Preceding gene: 42522168
Following gene: 42522170
Centisome position: 14.01
GC content: 51.95
Gene sequence:
>1026_bases GTGCCTGAAGCCCACTGGAAGCTGACAGAGGTCCCCGTAATCCAAGGCCCCATGGCGGGAGGCTACACCACAGCCGAGCT GGTTTCTGCTGTCAGTAACAGCGGGGGGCTGGGCTCGATCGGTGCTGGATACATGTCACCGGATTCCTTGCGCTTGCTCA TTCAAAAAGTAAAAAATTTGACCACAAGACCTTTTGCGGTGAATCTGTTCATTCCAACGTCCCCGGCGGTGGATCTGCTG CAGGTCGAAAGAATGAAGAAACTTCTGCTGCCATTCTATCGGGAACTGGGGATGGATTCCGTTCCTGAGCTTTCCTATGA CCCTGATCTTTTCCAAAAACAATTTGCCGTTGTGCTGGAAGAAAAAGTCCCTGCTTTCAGTTTCACCTTCGGGTGCCTGA AGCCGTCAGAGATGGCGGCGCTGAAATCTCTGAACGTGTTTGTCATGGGGACTGCCACCAGTTTGGAAGAGGCAGAGTAT TTGCAAAAGCAGGGTTGTGATGCGGTGGTGGCGCAGGGCCTGGAGGCCGGAGGTCATCGCGGGTCTTTTTTGGATGGAAA GTTTCCGCTGTTGCCTGCGAAAAATCTGGTTCAGGAGATATCGGAAAGGTTTCAGATCCCGGTGATCGCCGCTGGTGGAA TTGTGAGCAAAGCAGACATGCAAACGATGCTTTCTGCCGGTGCGGTTGCGGTTCAAATCGGCACGGCTTTCCTGGTCTGT CACGAAAGCGGAGCTTCACAGGAATACCGGGACCTTTTGCTCAAAGGAAAACCCAAAGATACAGAACTAATTAAAGTCTT CAGTGGTCGCTGGTCTCGAGGATTGAGCAATCGGTTTTCCCGGGAAATGAAAATTCACGAAACTGATACTCCGGACTATC CAATTCAACACTGGCTGACGACTCCGTTGCGAAAAAAAGCGCAGGAAAGCGGTCGTCCTGAGTTTCAGTCACTGTGGTCA GGACAAGGTTTGGGCTCTCTGAGGGCGTGTTCTGTGGCTGAGTATATGGCCACATTAAGTCGGTAG
Upstream 100 bases:
>100_bases GTCTGTGGTGCCGACCCTTGCCGATGTGGAATGAAATTGTTGAAGTTGAAGGGCAGAAAGTTCCGCGTTTCAAATTCCTG TTCAAGTAACGAGGTCAATT
Downstream 100 bases:
>100_bases AATTTTCAGATTATTCAGGAGTTTCCGCCACCTAGGGTGGGGTTATCAGTAAGCTTTCAGTTGGCGTTCAAGGCCTTCTC ATTTATCGCTAAATAAGGTG
Product: 2-nitropropane dioxygenase
Products: NA
Alternate protein names: Nitroalkane oxidase [H]
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MPEAHWKLTEVPVIQGPMAGGYTTAELVSAVSNSGGLGSIGAGYMSPDSLRLLIQKVKNLTTRPFAVNLFIPTSPAVDLL QVERMKKLLLPFYRELGMDSVPELSYDPDLFQKQFAVVLEEKVPAFSFTFGCLKPSEMAALKSLNVFVMGTATSLEEAEY LQKQGCDAVVAQGLEAGGHRGSFLDGKFPLLPAKNLVQEISERFQIPVIAAGGIVSKADMQTMLSAGAVAVQIGTAFLVC HESGASQEYRDLLLKGKPKDTELIKVFSGRWSRGLSNRFSREMKIHETDTPDYPIQHWLTTPLRKKAQESGRPEFQSLWS GQGLGSLRACSVAEYMATLSR
Sequences:
>Translated_341_residues MPEAHWKLTEVPVIQGPMAGGYTTAELVSAVSNSGGLGSIGAGYMSPDSLRLLIQKVKNLTTRPFAVNLFIPTSPAVDLL QVERMKKLLLPFYRELGMDSVPELSYDPDLFQKQFAVVLEEKVPAFSFTFGCLKPSEMAALKSLNVFVMGTATSLEEAEY LQKQGCDAVVAQGLEAGGHRGSFLDGKFPLLPAKNLVQEISERFQIPVIAAGGIVSKADMQTMLSAGAVAVQIGTAFLVC HESGASQEYRDLLLKGKPKDTELIKVFSGRWSRGLSNRFSREMKIHETDTPDYPIQHWLTTPLRKKAQESGRPEFQSLWS GQGLGSLRACSVAEYMATLSR >Mature_340_residues PEAHWKLTEVPVIQGPMAGGYTTAELVSAVSNSGGLGSIGAGYMSPDSLRLLIQKVKNLTTRPFAVNLFIPTSPAVDLLQ VERMKKLLLPFYRELGMDSVPELSYDPDLFQKQFAVVLEEKVPAFSFTFGCLKPSEMAALKSLNVFVMGTATSLEEAEYL QKQGCDAVVAQGLEAGGHRGSFLDGKFPLLPAKNLVQEISERFQIPVIAAGGIVSKADMQTMLSAGAVAVQIGTAFLVCH ESGASQEYRDLLLKGKPKDTELIKVFSGRWSRGLSNRFSREMKIHETDTPDYPIQHWLTTPLRKKAQESGRPEFQSLWSG QGLGSLRACSVAEYMATLSR
Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitronate monooxygenase family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322609, Length=362, Percent_Identity=28.4530386740331, Blast_Score=99, Evalue=7e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004136 - InterPro: IPR013785 [H]
Pfam domain/function: PF03060 NPD [H]
EC number: =1.13.12.16 [H]
Molecular weight: Translated: 37250; Mature: 37119
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEAHWKLTEVPVIQGPMAGGYTTAELVSAVSNSGGLGSIGAGYMSPDSLRLLIQKVKNL CCCCCCEEECCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCC TTRPFAVNLFIPTSPAVDLLQVERMKKLLLPFYRELGMDSVPELSYDPDLFQKQFAVVLE CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH EKVPAFSFTFGCLKPSEMAALKSLNVFVMGTATSLEEAEYLQKQGCDAVVAQGLEAGGHR HCCCCEEEEECCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHCCCCC GSFLDGKFPLLPAKNLVQEISERFQIPVIAAGGIVSKADMQTMLSAGAVAVQIGTAFLVC CCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHCCCEEEEECEEEEEE HESGASQEYRDLLLKGKPKDTELIKVFSGRWSRGLSNRFSREMKIHETDTPDYPIQHWLT ECCCCCHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHCCEEEECCCCCCCCHHHHHC TPLRKKAQESGRPEFQSLWSGQGLGSLRACSVAEYMATLSR CHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure PEAHWKLTEVPVIQGPMAGGYTTAELVSAVSNSGGLGSIGAGYMSPDSLRLLIQKVKNL CCCCCEEECCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCC TTRPFAVNLFIPTSPAVDLLQVERMKKLLLPFYRELGMDSVPELSYDPDLFQKQFAVVLE CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH EKVPAFSFTFGCLKPSEMAALKSLNVFVMGTATSLEEAEYLQKQGCDAVVAQGLEAGGHR HCCCCEEEEECCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHCCCCC GSFLDGKFPLLPAKNLVQEISERFQIPVIAAGGIVSKADMQTMLSAGAVAVQIGTAFLVC CCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHCCCEEEEECEEEEEE HESGASQEYRDLLLKGKPKDTELIKVFSGRWSRGLSNRFSREMKIHETDTPDYPIQHWLT ECCCCCHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHCCEEEECCCCCCCCHHHHHC TPLRKKAQESGRPEFQSLWSGQGLGSLRACSVAEYMATLSR CHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA