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The map label for this gene is ycbB [H]

Identifier: 42522163

GI number: 42522163

Start: 524417

End: 525934

Strand: Direct

Name: ycbB [H]

Synonym: Bd0566

Alternate gene names: 42522163

Gene position: 524417-525934 (Clockwise)

Preceding gene: 42522160

Following gene: 42522166

Centisome position: 13.86

GC content: 49.74

Gene sequence:

>1518_bases
ATGGAGCTGGTGCGTCTCATGGGTTTCTTGACTGTTCTGAGCCTTGCTTTGAGTGCGAACGCGCAGAATTCAAAGGACTA
CTTGGTCGTTGTGGACAGAATTCCGGTAAGTGAACTGCGCTGGGTGATGACACAGTCAGGGGATCATGGAGTCAATGCGA
AGAGCTACTGGTCGGATTCAATGGAGCAAACTTTTTTGGTTGATCCACTCAATCCCACTCTGCGAAATCAGGCGAGCGTT
AACTATCTGCGCCTGCTGCAGAATGTTTCCACTGGAATTGTCGATCCGGCCCTGGTGGGTGTGGATGTGAAACTGACCAA
GAAAAAATTCCCGACAGCCCTGGAGCTCGAGACTGCGTTGGCTGCCGCCGGACAAAATCCCAATGTGCTGCTGGAATCAA
TGTCCCCGCAGTCTCCTCAATATCTGGCGTTGCGCGACAGTCTTCGCAAATTGAACAATGCCTGTGTAAACAACCTGTGG
CCAGCCTTGCCCAAAGTCAAAAAGACTTTGAAGCTGGGGAGTAAAGACGCCATTTTGATTCCTTTAAAAACACGCATGAC
TCAACTGGGATATCCCATGACCAGTCTGGACAATGTCTTTGATGACAAAGTGGTGGCGGCGGTGAATGACATTCAGTGGA
ACCTGCGTTTTAAACCGGACAGCAAAATTTCCCCAGGCGGCAAAACTTGGAAGTACCTGAATGTGTCCTGTCAGGATCGT
ATGCGCCAGATCCGTCTGGATATGGAAAAGCTGCGCTGGTTCCCTCAGCACTTTGAAGACCGCTATATCTTTATCAATCT
GGCGATGTCCTATTTTAGCCTGGTCGACAAGAGTGGAGGGGGCTTTTATTCAATGAGTTTCCGCACGATCAACGGTCGAC
CAGAAAGAAAGTCTCCGACGATGAAAGACAAGATCGTCTACATCGTGATCAATCCATTCTGGGTGGTGCCTCCGACGATC
TTCCGCGAAGACAAGGTCGAAGAGATCAAGAATTTATGGCCTTGGGAGATCCGCGAATACTTTGATACCCGTCATTATCA
GGTTTGGAACAAGTCCTTCACTCAAAGGTTCGATCCGGCCAGTATTGACTGGTACAACATGGATCCAAATCAGGATGCCA
ATATTTATATTCGTCAAAGCCCGCATCGCATGAATGCCCTGGGCTCATTGAAGTTTATGATGACCAATTCCTATGCGATC
TATCTGCATGATACGAATCAGCGGGAATTGTTCGCCGAGCCTCATCGACTGCTTAGTTCCGGTTGTGTGCGGGTGGAAAA
GCCCGTGGATCTTGCCGAATACCTGCTGAAGGGGACTGAATGGGACCGCGCTGCGATCGAGCGTTATATGGCAAAACCCG
GGGAAGTGCTGGATAAAGACACCAAGGTTCAACTGAAACAGCAGATGCCGGTCTATATGGTGTTCCTGACGTCGCAGCTG
AGTTCTGATGGAATTCTGCGCTTTGCCGAGGACTCTTACAGACAAGGCACCCGTTTGTTAAGACTGGGTGCCTGGTAG

Upstream 100 bases:

>100_bases
TTTTGTTTTGGAAATCTTCAAGTCCGTCGACCAGACCCAGCCTAACAATGCCGCAAGAACGGAGACAAAATTAATTTAAA
AGAAGACATGAGGAGGGGTT

Downstream 100 bases:

>100_bases
GTTCTTGAATATTAACGTCCGGCTGGAATCGTTGTGGTGGTTGTAGAATTGATGATCGGTACCGGTGCCAGGGAACTGGT
GCCGGTGGAGTAGATCGGTG

Product: putative periplamic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 505; Mature: 505

Protein sequence:

>505_residues
MELVRLMGFLTVLSLALSANAQNSKDYLVVVDRIPVSELRWVMTQSGDHGVNAKSYWSDSMEQTFLVDPLNPTLRNQASV
NYLRLLQNVSTGIVDPALVGVDVKLTKKKFPTALELETALAAAGQNPNVLLESMSPQSPQYLALRDSLRKLNNACVNNLW
PALPKVKKTLKLGSKDAILIPLKTRMTQLGYPMTSLDNVFDDKVVAAVNDIQWNLRFKPDSKISPGGKTWKYLNVSCQDR
MRQIRLDMEKLRWFPQHFEDRYIFINLAMSYFSLVDKSGGGFYSMSFRTINGRPERKSPTMKDKIVYIVINPFWVVPPTI
FREDKVEEIKNLWPWEIREYFDTRHYQVWNKSFTQRFDPASIDWYNMDPNQDANIYIRQSPHRMNALGSLKFMMTNSYAI
YLHDTNQRELFAEPHRLLSSGCVRVEKPVDLAEYLLKGTEWDRAAIERYMAKPGEVLDKDTKVQLKQQMPVYMVFLTSQL
SSDGILRFAEDSYRQGTRLLRLGAW

Sequences:

>Translated_505_residues
MELVRLMGFLTVLSLALSANAQNSKDYLVVVDRIPVSELRWVMTQSGDHGVNAKSYWSDSMEQTFLVDPLNPTLRNQASV
NYLRLLQNVSTGIVDPALVGVDVKLTKKKFPTALELETALAAAGQNPNVLLESMSPQSPQYLALRDSLRKLNNACVNNLW
PALPKVKKTLKLGSKDAILIPLKTRMTQLGYPMTSLDNVFDDKVVAAVNDIQWNLRFKPDSKISPGGKTWKYLNVSCQDR
MRQIRLDMEKLRWFPQHFEDRYIFINLAMSYFSLVDKSGGGFYSMSFRTINGRPERKSPTMKDKIVYIVINPFWVVPPTI
FREDKVEEIKNLWPWEIREYFDTRHYQVWNKSFTQRFDPASIDWYNMDPNQDANIYIRQSPHRMNALGSLKFMMTNSYAI
YLHDTNQRELFAEPHRLLSSGCVRVEKPVDLAEYLLKGTEWDRAAIERYMAKPGEVLDKDTKVQLKQQMPVYMVFLTSQL
SSDGILRFAEDSYRQGTRLLRLGAW
>Mature_505_residues
MELVRLMGFLTVLSLALSANAQNSKDYLVVVDRIPVSELRWVMTQSGDHGVNAKSYWSDSMEQTFLVDPLNPTLRNQASV
NYLRLLQNVSTGIVDPALVGVDVKLTKKKFPTALELETALAAAGQNPNVLLESMSPQSPQYLALRDSLRKLNNACVNNLW
PALPKVKKTLKLGSKDAILIPLKTRMTQLGYPMTSLDNVFDDKVVAAVNDIQWNLRFKPDSKISPGGKTWKYLNVSCQDR
MRQIRLDMEKLRWFPQHFEDRYIFINLAMSYFSLVDKSGGGFYSMSFRTINGRPERKSPTMKDKIVYIVINPFWVVPPTI
FREDKVEEIKNLWPWEIREYFDTRHYQVWNKSFTQRFDPASIDWYNMDPNQDANIYIRQSPHRMNALGSLKFMMTNSYAI
YLHDTNQRELFAEPHRLLSSGCVRVEKPVDLAEYLLKGTEWDRAAIERYMAKPGEVLDKDTKVQLKQQMPVYMVFLTSQL
SSDGILRFAEDSYRQGTRLLRLGAW

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=418, Percent_Identity=29.6650717703349, Blast_Score=156, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 58312; Mature: 58312

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELVRLMGFLTVLSLALSANAQNSKDYLVVVDRIPVSELRWVMTQSGDHGVNAKSYWSDS
CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCHHHHCCC
MEQTFLVDPLNPTLRNQASVNYLRLLQNVSTGIVDPALVGVDVKLTKKKFPTALELETAL
CCCEEEECCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCCHHHHHHHH
AAAGQNPNVLLESMSPQSPQYLALRDSLRKLNNACVNNLWPALPKVKKTLKLGSKDAILI
HHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
PLKTRMTQLGYPMTSLDNVFDDKVVAAVNDIQWNLRFKPDSKISPGGKTWKYLNVSCQDR
EHHHHHHHHCCCHHHHHHHHCCHHHEEEECEEEEEEECCCCCCCCCCCCEEEEECCHHHH
MRQIRLDMEKLRWFPQHFEDRYIFINLAMSYFSLVDKSGGGFYSMSFRTINGRPERKSPT
HHHHHHCHHHHHHCHHHCCCCEEEEEHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCC
MKDKIVYIVINPFWVVPPTIFREDKVEEIKNLWPWEIREYFDTRHYQVWNKSFTQRFDPA
CCCCEEEEEECCEEECCCHHHCCCHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCCCC
SIDWYNMDPNQDANIYIRQSPHRMNALGSLKFMMTNSYAIYLHDTNQRELFAEPHRLLSS
CCEEEECCCCCCCEEEEECCCCHHHHHHCEEEEEECCEEEEEEECCCHHHHHHHHHHHHC
GCVRVEKPVDLAEYLLKGTEWDRAAIERYMAKPGEVLDKDTKVQLKQQMPVYMVFLTSQL
CCEEECCCCHHHHHHHCCCCCCHHHHHHHHCCCCHHHCCCHHHHHHHCCCEEEEEEEHHC
SSDGILRFAEDSYRQGTRLLRLGAW
CCCCCEEECCHHHHCCCEEEEECCC
>Mature Secondary Structure
MELVRLMGFLTVLSLALSANAQNSKDYLVVVDRIPVSELRWVMTQSGDHGVNAKSYWSDS
CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCHHHHCCC
MEQTFLVDPLNPTLRNQASVNYLRLLQNVSTGIVDPALVGVDVKLTKKKFPTALELETAL
CCCEEEECCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHCCCHHHHHHHH
AAAGQNPNVLLESMSPQSPQYLALRDSLRKLNNACVNNLWPALPKVKKTLKLGSKDAILI
HHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
PLKTRMTQLGYPMTSLDNVFDDKVVAAVNDIQWNLRFKPDSKISPGGKTWKYLNVSCQDR
EHHHHHHHHCCCHHHHHHHHCCHHHEEEECEEEEEEECCCCCCCCCCCCEEEEECCHHHH
MRQIRLDMEKLRWFPQHFEDRYIFINLAMSYFSLVDKSGGGFYSMSFRTINGRPERKSPT
HHHHHHCHHHHHHCHHHCCCCEEEEEHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCC
MKDKIVYIVINPFWVVPPTIFREDKVEEIKNLWPWEIREYFDTRHYQVWNKSFTQRFDPA
CCCCEEEEEECCEEECCCHHHCCCHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCCCC
SIDWYNMDPNQDANIYIRQSPHRMNALGSLKFMMTNSYAIYLHDTNQRELFAEPHRLLSS
CCEEEECCCCCCCEEEEECCCCHHHHHHCEEEEEECCEEEEEEECCCHHHHHHHHHHHHC
GCVRVEKPVDLAEYLLKGTEWDRAAIERYMAKPGEVLDKDTKVQLKQQMPVYMVFLTSQL
CCEEECCCCHHHHHHHCCCCCCHHHHHHHHCCCCHHHCCCHHHHHHHCCCEEEEEEEHHC
SSDGILRFAEDSYRQGTRLLRLGAW
CCCCCEEECCHHHHCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]