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The map label for this gene is rsbU

Identifier: 42522159

GI number: 42522159

Start: 519425

End: 520318

Strand: Direct

Name: rsbU

Synonym: Bd0561

Alternate gene names: NA

Gene position: 519425-520318 (Clockwise)

Preceding gene: 42522158

Following gene: 42522160

Centisome position: 13.73

GC content: 54.92

Gene sequence:

>894_bases
ATGGCAAAAGAACAAGACGAACTCAAAGAGCGAATTTCAGAACTGGAACACGAACTGGCGGTGAAAGAGGCGGAACTTCA
CCGCTATCGCCTTGAGCTGTCCAAAGCCAACGGCGCTCTGGAAAAAATGATTGCGCAGATCAGCCAGGAGCTGAAGCTGG
CGCAGGTCATGCAAAAGTTTCTTTCGCCCACCGAGCTTCCCAATGTCCAGGGCTTTGAGTTCAGCACCAAATTCCTTCCC
GGCACGCGGTCGGGGGGGGACTACTTCGATATCTTTGAACACGAAGACAAACTCAAATTCGGCATTCTGATTTCCAGTGC
CAGCGGTTATTCGCTGTCTTCGGTGCTGCTTTCCGTGATCATCAAAATCTCTTCGCAGATCGAGGCCCGCCGGGGCTTGG
AGGCTCACAAGGTGCTGGCGTTGCTGGCCAAGGAAGTGGTGCCGTCCATTCAGAATGAAGACAAGGCCAGCGTGTTTTAC
GGGATCGTGGATCGCCGCAGCTTCGAAATGCAGTACTGCTCTGTCGGAAACATCGACGGCTTCATGCAGGTCTATGGTCA
GGACAGTTTGGTGGAGCTTCTGCCGACCGGTCCTAGCCTTGGTAAGGACTTTAACACGGAGCCACAAAGCCGGGTGATCC
AGCTCAATCCGCGGGATCGCCTGATACTGGCGACCGAAGGTTTGAAGCTGTCCCAAAACTCCCTGGGTGTGAACTGGGGT
GGACACGGGATTTCCGAGGCGATTTCTCGGGCCCCGAAGCAGGGTGTGCACGAGCTGCGCAACGAGATTCTGCTCTCGAA
TGAGCGGTACTCAGGCAAACAGGATCCCGTCCGGGATCAGACTTTGATCGTCACGGAAGTGAAGGATCGGGTCATTAAAC
TGGCGTCCCGCTAA

Upstream 100 bases:

>100_bases
AGGTGCCCGAACACATTCAAGCCCGACTAAAGGCCGAAGAAGAACAACTGAATCTGTTCCTTCACGACTGGGCGTAAAAA
AGAATTTATTATAAGCCGTC

Downstream 100 bases:

>100_bases
TCTGATTTTTACTATGTTTTCAGTGGCCTGGTTTGTAAGACCTAGGATCGGGAACCGCGTGACAACTTGTGAAAACTCCT
GTTAAGTCTACAATGTTTAA

Product: sigmaB regulation protein RsbU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MAKEQDELKERISELEHELAVKEAELHRYRLELSKANGALEKMIAQISQELKLAQVMQKFLSPTELPNVQGFEFSTKFLP
GTRSGGDYFDIFEHEDKLKFGILISSASGYSLSSVLLSVIIKISSQIEARRGLEAHKVLALLAKEVVPSIQNEDKASVFY
GIVDRRSFEMQYCSVGNIDGFMQVYGQDSLVELLPTGPSLGKDFNTEPQSRVIQLNPRDRLILATEGLKLSQNSLGVNWG
GHGISEAISRAPKQGVHELRNEILLSNERYSGKQDPVRDQTLIVTEVKDRVIKLASR

Sequences:

>Translated_297_residues
MAKEQDELKERISELEHELAVKEAELHRYRLELSKANGALEKMIAQISQELKLAQVMQKFLSPTELPNVQGFEFSTKFLP
GTRSGGDYFDIFEHEDKLKFGILISSASGYSLSSVLLSVIIKISSQIEARRGLEAHKVLALLAKEVVPSIQNEDKASVFY
GIVDRRSFEMQYCSVGNIDGFMQVYGQDSLVELLPTGPSLGKDFNTEPQSRVIQLNPRDRLILATEGLKLSQNSLGVNWG
GHGISEAISRAPKQGVHELRNEILLSNERYSGKQDPVRDQTLIVTEVKDRVIKLASR
>Mature_296_residues
AKEQDELKERISELEHELAVKEAELHRYRLELSKANGALEKMIAQISQELKLAQVMQKFLSPTELPNVQGFEFSTKFLPG
TRSGGDYFDIFEHEDKLKFGILISSASGYSLSSVLLSVIIKISSQIEARRGLEAHKVLALLAKEVVPSIQNEDKASVFYG
IVDRRSFEMQYCSVGNIDGFMQVYGQDSLVELLPTGPSLGKDFNTEPQSRVIQLNPRDRLILATEGLKLSQNSLGVNWGG
HGISEAISRAPKQGVHELRNEILLSNERYSGKQDPVRDQTLIVTEVKDRVIKLASR

Specific function: Unknown

COG id: COG2208

COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33228; Mature: 33097

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEQDELKERISELEHELAVKEAELHRYRLELSKANGALEKMIAQISQELKLAQVMQKF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LSPTELPNVQGFEFSTKFLPGTRSGGDYFDIFEHEDKLKFGILISSASGYSLSSVLLSVI
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHH
IKISSQIEARRGLEAHKVLALLAKEVVPSIQNEDKASVFYGIVDRRSFEMQYCSVGNIDG
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEECCCCCCHH
FMQVYGQDSLVELLPTGPSLGKDFNTEPQSRVIQLNPRDRLILATEGLKLSQNSLGVNWG
HHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCEECCCCCCCCCC
GHGISEAISRAPKQGVHELRNEILLSNERYSGKQDPVRDQTLIVTEVKDRVIKLASR
CCCHHHHHHHCHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC
>Mature Secondary Structure 
AKEQDELKERISELEHELAVKEAELHRYRLELSKANGALEKMIAQISQELKLAQVMQKF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LSPTELPNVQGFEFSTKFLPGTRSGGDYFDIFEHEDKLKFGILISSASGYSLSSVLLSVI
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHH
IKISSQIEARRGLEAHKVLALLAKEVVPSIQNEDKASVFYGIVDRRSFEMQYCSVGNIDG
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEECCCCCCHH
FMQVYGQDSLVELLPTGPSLGKDFNTEPQSRVIQLNPRDRLILATEGLKLSQNSLGVNWG
HHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCEECCCCCCCCCC
GHGISEAISRAPKQGVHELRNEILLSNERYSGKQDPVRDQTLIVTEVKDRVIKLASR
CCCHHHHHHHCHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA