| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42522147
Identifier: 42522147
GI number: 42522147
Start: 508534
End: 509526
Strand: Direct
Name: 42522147
Synonym: Bd0547
Alternate gene names: NA
Gene position: 508534-509526 (Clockwise)
Preceding gene: 42522146
Following gene: 42522148
Centisome position: 13.44
GC content: 52.57
Gene sequence:
>993_bases TTGATCAAGATCAGCTACAGCCCCTACACTCTGAAACCTGTCCAGTCCCTGAATGCCGCTACAGCGGCCACCGCGCGTGA AGGGGTCTTGCTGAAGGTTGAGTGGAATGACGGGCTGTATGGCTTTGCGGATCTTCATCCGTGGCCTGAGCTGGGAGATC TGTCCCTGGAAGAACAGCTTTCTGATCTGCGTATGGGGCGCATGACCACACAGATTGAGCAAAGCATCTGGCTGGCCCGT CGGGACGCGCTTCTTCGCAAAGAAAAGAAACACGTCTTTGATGGCGGCGAAAAAATCAAAAACAACTATCTGCTTTCGCA CTTTCAGGACCTGAAGCCCGGGTTTTTGGATGGACTGAAAAACGAAGGCTACAACACGGTCAAAGTCAAAATGGGCCGTG ATCTGCAAAAAGAAGCCGACATGTTAACCCATATCGCCGCTTCGGGCATGCGCATGCGCCTGGATTTCAATGCGTTGGGA AGCTGGCAGACTTTTGAAAAGTTCATGGTGAACCTGCCGCTGACGGTGCGTCCGCTGATTGAATACGTTGAAGATCCCTT TCCGTTTGATTTTCACGCCTGGGGCGAAGCCCGCAAGCTGGCCAAAATCGCGTTGGACAATCAGTACGACAAAGTGCCGT GGGGTAAGATTGCTTCAGCGCCTTTTGATGTGATCGTGATTAAGCCCGCAAAGACCGACGTCGACAAGGCGGTCGCCCAA TGCCAGAAGTGGAACCTGAAACTGGCGGTGACCAGCTATATGGATCATCCGGTGGGTGTTGTGCATGCCGTGGGTGTGGC GATGGAATTAAAAGACAAGTATGGGGACATGATTCTTGAATCCGGCTGTCTGACTCATCGCCTGTACCAGATGGATTCTT TTGCCGCCGAGCTTTCCACGCAAGGACCGTATCTTTTGAAGAACAAAGGCACGGGAGTGGGCTTTGATAAACTGCTGGAG GCCCTGACGTGGTATCAGCTCAAAGTCCGATAG
Upstream 100 bases:
>100_bases TTTTCGCCACGGAGCCAAGTCCGGCATACAATAAATTCCTGGGGCAGGCAGCGGGATTGCATCTGCTCTTTGGACTTCTT ATTGCGATTGGATTTGCTTT
Downstream 100 bases:
>100_bases ATCTTCATTCTGAATCTAACGAAATCCTGCTGAACCCGCGCTGGCCTGAAATCGACTATCAGGCTTTGTACCGTCTTGCG GAAGAAAGTCAGATTGAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MIKISYSPYTLKPVQSLNAATAATAREGVLLKVEWNDGLYGFADLHPWPELGDLSLEEQLSDLRMGRMTTQIEQSIWLAR RDALLRKEKKHVFDGGEKIKNNYLLSHFQDLKPGFLDGLKNEGYNTVKVKMGRDLQKEADMLTHIAASGMRMRLDFNALG SWQTFEKFMVNLPLTVRPLIEYVEDPFPFDFHAWGEARKLAKIALDNQYDKVPWGKIASAPFDVIVIKPAKTDVDKAVAQ CQKWNLKLAVTSYMDHPVGVVHAVGVAMELKDKYGDMILESGCLTHRLYQMDSFAAELSTQGPYLLKNKGTGVGFDKLLE ALTWYQLKVR
Sequences:
>Translated_330_residues MIKISYSPYTLKPVQSLNAATAATAREGVLLKVEWNDGLYGFADLHPWPELGDLSLEEQLSDLRMGRMTTQIEQSIWLAR RDALLRKEKKHVFDGGEKIKNNYLLSHFQDLKPGFLDGLKNEGYNTVKVKMGRDLQKEADMLTHIAASGMRMRLDFNALG SWQTFEKFMVNLPLTVRPLIEYVEDPFPFDFHAWGEARKLAKIALDNQYDKVPWGKIASAPFDVIVIKPAKTDVDKAVAQ CQKWNLKLAVTSYMDHPVGVVHAVGVAMELKDKYGDMILESGCLTHRLYQMDSFAAELSTQGPYLLKNKGTGVGFDKLLE ALTWYQLKVR >Mature_330_residues MIKISYSPYTLKPVQSLNAATAATAREGVLLKVEWNDGLYGFADLHPWPELGDLSLEEQLSDLRMGRMTTQIEQSIWLAR RDALLRKEKKHVFDGGEKIKNNYLLSHFQDLKPGFLDGLKNEGYNTVKVKMGRDLQKEADMLTHIAASGMRMRLDFNALG SWQTFEKFMVNLPLTVRPLIEYVEDPFPFDFHAWGEARKLAKIALDNQYDKVPWGKIASAPFDVIVIKPAKTDVDKAVAQ CQKWNLKLAVTSYMDHPVGVVHAVGVAMELKDKYGDMILESGCLTHRLYQMDSFAAELSTQGPYLLKNKGTGVGFDKLLE ALTWYQLKVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37402; Mature: 37402
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKISYSPYTLKPVQSLNAATAATAREGVLLKVEWNDGLYGFADLHPWPELGDLSLEEQL CEEEECCCCEECHHHHCCHHHHHHHCCCEEEEEEECCCCEEECCCCCCCCCCCCCHHHHH SDLRMGRMTTQIEQSIWLARRDALLRKEKKHVFDGGEKIKNNYLLSHFQDLKPGFLDGLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH NEGYNTVKVKMGRDLQKEADMLTHIAASGMRMRLDFNALGSWQTFEKFMVNLPLTVRPLI CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCCHHHHHH EYVEDPFPFDFHAWGEARKLAKIALDNQYDKVPWGKIASAPFDVIVIKPAKTDVDKAVAQ HHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHH CQKWNLKLAVTSYMDHPVGVVHAVGVAMELKDKYGDMILESGCLTHRLYQMDSFAAELST HHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC QGPYLLKNKGTGVGFDKLLEALTWYQLKVR CCCEEEECCCCCCCHHHHHHHHHHEEEEEC >Mature Secondary Structure MIKISYSPYTLKPVQSLNAATAATAREGVLLKVEWNDGLYGFADLHPWPELGDLSLEEQL CEEEECCCCEECHHHHCCHHHHHHHCCCEEEEEEECCCCEEECCCCCCCCCCCCCHHHHH SDLRMGRMTTQIEQSIWLARRDALLRKEKKHVFDGGEKIKNNYLLSHFQDLKPGFLDGLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH NEGYNTVKVKMGRDLQKEADMLTHIAASGMRMRLDFNALGSWQTFEKFMVNLPLTVRPLI CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCCHHHHHH EYVEDPFPFDFHAWGEARKLAKIALDNQYDKVPWGKIASAPFDVIVIKPAKTDVDKAVAQ HHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHH CQKWNLKLAVTSYMDHPVGVVHAVGVAMELKDKYGDMILESGCLTHRLYQMDSFAAELST HHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC QGPYLLKNKGTGVGFDKLLEALTWYQLKVR CCCEEEECCCCCCCHHHHHHHHHHEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA