| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42522128
Identifier: 42522128
GI number: 42522128
Start: 489744
End: 491129
Strand: Direct
Name: 42522128
Synonym: Bd0524
Alternate gene names: NA
Gene position: 489744-491129 (Clockwise)
Preceding gene: 42522127
Following gene: 42522130
Centisome position: 12.95
GC content: 56.06
Gene sequence:
>1386_bases TTGGAATTACCGAACAGTTTATTTATGGGAATGAGATCTTTTCTATCAATCAGCATGTTGTTCGCGCTTTCGATAAGTCT CTTCTCTGTGGAGGCCGAGGCTCGCCGGTGCAGGGCTCAGTGTGCCCAGGGCTACACCTGTTTTATGCCGGATCCGACGG ATCCCAATGGTCGCAACGACATGTGTGTGGCCTCCAACCAGGTCAGCAACACAGATTGTGTTTCGCAGTACAACCAGCTT GCTGAGCAGTGCCGTGCGCAGGTTACTGACACCACTTATACTTGTGATGAAAAGAATGACTCGGGCATGAGTGGTATTGC CAATTCAGCCTCCCAGCTTAGTTTGATGTTCGGTCAGCAGACCGCGGGAAGCATTCAGGCAGCGTGTTCAAAAATGGCTT CCTTCAGTTCGGCGGCGAATGCAGCAGTGGCGGCATACCGTTTGACCTGTCAATCCTCGATCACCAGCTGCCATTCGGCC TGTGATCAGGTTGTCGAATATGTCAGCAGCAATTCAGCTTGTTTGGATGCGGCAGGTGGCGCCGGGTCTTCGGCTCAGAT GAGATCCTCTGCAGAAAGTGCGGCCGGGCGCTGCAATGACTTCGATGCGAAGGTGGCGGAAGCCAATCAGGCGATCAATA ATTTCGCGGGCACCATGCAGAACGCGGCCCAGTGTGCATCTTTGACTTCCGGTGACAGCACGGCTTTGCCAGAGCTGTGC AAAGCCAATCCTTCTTTGCCAGGCTGTGAAGGCGTGGCGGCGGTGGATTGTACAAATCCCGCGATGTCGGGAAATAAAGT CTGTGTGTGTGCGAAGAATCCTTCCGATCCTGTTTGTATGAGTGAAAAAAGCTCTGCGGGTTCCACTTTTATCAGCAGCA CCAATCCGGGTTCTCGCCTTTCAACTAATGGCGCGGACCTTTCCGGTGGCGATCTGCCAAGTCTTCCTTCCATTCTTCCG GGCAAACCAGGTTCTGGTGGTGCCGGTGAAGCTGTCGACGGAAAACAAGGCGGCGGCGCAGGCATTTCCAGCATGGGTGG CGGCGGCGGAGGCGGGGCTTCCGGTGGCGCTGCAGGCGAAGAGGGCCTTGAAGACGGTGTTCAGGTGAATGCCGGATTCT ATGGTGGTGGCGGATCCTTTGGGGGTTCCGGCATGGGCAGTGGTGGTGGTGAGCGCGGAGCTGCCGGCATGGCTGGTGCG GCGGGCGCAGCCAAAGGCAAGGGGGCGCCGGATCTGCGCCAGTTCCTGCCTGGTGGTAAGTTCGATCCCAAATCCCGCGG TCTTGCTGGCAACGGCGGACCGGATGGAATTACGGGGCCTCATTCCAATATCTGGCTGAAAATTCAGAACAGATACCAGG TATTGAGTCCGACTTTGATGCCTTAG
Upstream 100 bases:
>100_bases ATATCTGGAAGAAAATTCAGAATCGTTATCAGGTTCTGGCTCCGACGTTGATTCCATAATCTCACTCTGAGACTTCGTTA TACTTTGGTAAAGTTCCCAT
Downstream 100 bases:
>100_bases TCTTAAATTGAGACGATTCTCTACCTTGGTAAAGTTCTCATGTTGAAATGCCGATCAGGCTTCCATGAGATTCAGTGCAT TGCTCGCGATAAAATCTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 461; Mature: 461
Protein sequence:
>461_residues MELPNSLFMGMRSFLSISMLFALSISLFSVEAEARRCRAQCAQGYTCFMPDPTDPNGRNDMCVASNQVSNTDCVSQYNQL AEQCRAQVTDTTYTCDEKNDSGMSGIANSASQLSLMFGQQTAGSIQAACSKMASFSSAANAAVAAYRLTCQSSITSCHSA CDQVVEYVSSNSACLDAAGGAGSSAQMRSSAESAAGRCNDFDAKVAEANQAINNFAGTMQNAAQCASLTSGDSTALPELC KANPSLPGCEGVAAVDCTNPAMSGNKVCVCAKNPSDPVCMSEKSSAGSTFISSTNPGSRLSTNGADLSGGDLPSLPSILP GKPGSGGAGEAVDGKQGGGAGISSMGGGGGGGASGGAAGEEGLEDGVQVNAGFYGGGGSFGGSGMGSGGGERGAAGMAGA AGAAKGKGAPDLRQFLPGGKFDPKSRGLAGNGGPDGITGPHSNIWLKIQNRYQVLSPTLMP
Sequences:
>Translated_461_residues MELPNSLFMGMRSFLSISMLFALSISLFSVEAEARRCRAQCAQGYTCFMPDPTDPNGRNDMCVASNQVSNTDCVSQYNQL AEQCRAQVTDTTYTCDEKNDSGMSGIANSASQLSLMFGQQTAGSIQAACSKMASFSSAANAAVAAYRLTCQSSITSCHSA CDQVVEYVSSNSACLDAAGGAGSSAQMRSSAESAAGRCNDFDAKVAEANQAINNFAGTMQNAAQCASLTSGDSTALPELC KANPSLPGCEGVAAVDCTNPAMSGNKVCVCAKNPSDPVCMSEKSSAGSTFISSTNPGSRLSTNGADLSGGDLPSLPSILP GKPGSGGAGEAVDGKQGGGAGISSMGGGGGGGASGGAAGEEGLEDGVQVNAGFYGGGGSFGGSGMGSGGGERGAAGMAGA AGAAKGKGAPDLRQFLPGGKFDPKSRGLAGNGGPDGITGPHSNIWLKIQNRYQVLSPTLMP >Mature_461_residues MELPNSLFMGMRSFLSISMLFALSISLFSVEAEARRCRAQCAQGYTCFMPDPTDPNGRNDMCVASNQVSNTDCVSQYNQL AEQCRAQVTDTTYTCDEKNDSGMSGIANSASQLSLMFGQQTAGSIQAACSKMASFSSAANAAVAAYRLTCQSSITSCHSA CDQVVEYVSSNSACLDAAGGAGSSAQMRSSAESAAGRCNDFDAKVAEANQAINNFAGTMQNAAQCASLTSGDSTALPELC KANPSLPGCEGVAAVDCTNPAMSGNKVCVCAKNPSDPVCMSEKSSAGSTFISSTNPGSRLSTNGADLSGGDLPSLPSILP GKPGSGGAGEAVDGKQGGGAGISSMGGGGGGGASGGAAGEEGLEDGVQVNAGFYGGGGSFGGSGMGSGGGERGAAGMAGA AGAAKGKGAPDLRQFLPGGKFDPKSRGLAGNGGPDGITGPHSNIWLKIQNRYQVLSPTLMP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45874; Mature: 45874
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.3 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 8.0 %Cys+Met (Translated Protein) 4.3 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 8.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELPNSLFMGMRSFLSISMLFALSISLFSVEAEARRCRAQCAQGYTCFMPDPTDPNGRND CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCC MCVASNQVSNTDCVSQYNQLAEQCRAQVTDTTYTCDEKNDSGMSGIANSASQLSLMFGQQ EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHCCHHHHHHHHCCC TAGSIQAACSKMASFSSAANAAVAAYRLTCQSSITSCHSACDQVVEYVSSNSACLDAAGG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC AGSSAQMRSSAESAAGRCNDFDAKVAEANQAINNFAGTMQNAAQCASLTSGDSTALPELC CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH KANPSLPGCEGVAAVDCTNPAMSGNKVCVCAKNPSDPVCMSEKSSAGSTFISSTNPGSRL HCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCC STNGADLSGGDLPSLPSILPGKPGSGGAGEAVDGKQGGGAGISSMGGGGGGGASGGAAGE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH EGLEDGVQVNAGFYGGGGSFGGSGMGSGGGERGAAGMAGAAGAAKGKGAPDLRQFLPGGK HHHHCCEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC FDPKSRGLAGNGGPDGITGPHSNIWLKIQNRYQVLSPTLMP CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEECCCCCCC >Mature Secondary Structure MELPNSLFMGMRSFLSISMLFALSISLFSVEAEARRCRAQCAQGYTCFMPDPTDPNGRND CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCC MCVASNQVSNTDCVSQYNQLAEQCRAQVTDTTYTCDEKNDSGMSGIANSASQLSLMFGQQ EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHCCHHHHHHHHCCC TAGSIQAACSKMASFSSAANAAVAAYRLTCQSSITSCHSACDQVVEYVSSNSACLDAAGG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC AGSSAQMRSSAESAAGRCNDFDAKVAEANQAINNFAGTMQNAAQCASLTSGDSTALPELC CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH KANPSLPGCEGVAAVDCTNPAMSGNKVCVCAKNPSDPVCMSEKSSAGSTFISSTNPGSRL HCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCC STNGADLSGGDLPSLPSILPGKPGSGGAGEAVDGKQGGGAGISSMGGGGGGGASGGAAGE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH EGLEDGVQVNAGFYGGGGSFGGSGMGSGGGERGAAGMAGAAGAAKGKGAPDLRQFLPGGK HHHHCCEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC FDPKSRGLAGNGGPDGITGPHSNIWLKIQNRYQVLSPTLMP CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA