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The map label for this gene is ybiF [H]

Identifier: 42522043

GI number: 42522043

Start: 407793

End: 408650

Strand: Direct

Name: ybiF [H]

Synonym: Bd0433

Alternate gene names: 42522043

Gene position: 407793-408650 (Clockwise)

Preceding gene: 42522042

Following gene: 42522049

Centisome position: 10.78

GC content: 53.5

Gene sequence:

>858_bases
GTGACGGAGAGTACCCGAGTGCAACCGCTGTATAAATCCATCTATCTCATTTTGATCGCCATGCTTTCCATTCAGTTTGG
CGCCTCGGTTGCTAAAGGTCTTTTCCCGGTGGCGGGCCCGGCGGGCACAACGGCCCTGAGGGTGTTCATTTCCGCGCTGA
TATTGGTTCTGGTGATGCGCCCGTGGCGGGAAAAATTCACAGCCTCCGGTCTTCGGCGAATTGCCGCCTATGGTATTTCG
CTGGGGCTGATGAATCTGCTGTTCTATTTCGCTCTTGAGCGCATTCCCCTGGGAATCGCGGTGGCCTTGGAGTTCACCGG
GCCTTTAACCGTGGCGTTGCTTTCCTCCAAACGAGTTTTGGATCTGGTGTGGGCGGTGCTTGCCGGGTTGGGAATATACC
TGATTCTGCCTTTGTCTGAAGTCAGTCAGGCATTGGATATGGTCGGCGTATTGTTGGCATTGGGCGCGGGCTTCTTTTGG
GCACTTTACATCGTGTTTGGCAAGGCGACGGGGAAAGAAAACTCCTCTTCAGCCACTTCTGCCGTCGGAATGTGTTTTGC
TGCGGCTGTGGCTTTCCCGGTGGGCCTCTACACGAACTTTGAACAAGTGGTGGATCCTTCGCTTTGGATGATGGGTTTTT
TGATTGCGATTCTTTCAAGCGCACTGCCGTACTCACTTGAAATGAAAGCCATGCAAAACATGCCGGCAAAGACTTTTGGA
ATTCTGATGAGCTTAGAACCCGCTTTTGCAACGTTGATCGGCATCTTGTTCTTAAGTGAATCCCTGATGCCATCCCAGTG
GGTGGCCATCGGCTGCATTATGGCGGCCTCGGCAGGAAGCACGATCACCGCCCGCTAA

Upstream 100 bases:

>100_bases
AGAATCCTTCGACCTGCTGTCAGGCACTTAGCACGTGCGATTCTCAGTGTGAGACCGGCCTGACACTTTCGGCCCAAGAG
CGCGCGCGCCTGTTAGAAAA

Downstream 100 bases:

>100_bases
AAAAAAAGCCCCGGGGTTTTTCCGGGGCTTCTGTGCATTAAATGATTCTTTTGTTTCGCTATTAGTATCTTAGCTCGGGG
TGAACACGCAGACCCTGAAT

Product: putative transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MTESTRVQPLYKSIYLILIAMLSIQFGASVAKGLFPVAGPAGTTALRVFISALILVLVMRPWREKFTASGLRRIAAYGIS
LGLMNLLFYFALERIPLGIAVALEFTGPLTVALLSSKRVLDLVWAVLAGLGIYLILPLSEVSQALDMVGVLLALGAGFFW
ALYIVFGKATGKENSSSATSAVGMCFAAAVAFPVGLYTNFEQVVDPSLWMMGFLIAILSSALPYSLEMKAMQNMPAKTFG
ILMSLEPAFATLIGILFLSESLMPSQWVAIGCIMAASAGSTITAR

Sequences:

>Translated_285_residues
MTESTRVQPLYKSIYLILIAMLSIQFGASVAKGLFPVAGPAGTTALRVFISALILVLVMRPWREKFTASGLRRIAAYGIS
LGLMNLLFYFALERIPLGIAVALEFTGPLTVALLSSKRVLDLVWAVLAGLGIYLILPLSEVSQALDMVGVLLALGAGFFW
ALYIVFGKATGKENSSSATSAVGMCFAAAVAFPVGLYTNFEQVVDPSLWMMGFLIAILSSALPYSLEMKAMQNMPAKTFG
ILMSLEPAFATLIGILFLSESLMPSQWVAIGCIMAASAGSTITAR
>Mature_284_residues
TESTRVQPLYKSIYLILIAMLSIQFGASVAKGLFPVAGPAGTTALRVFISALILVLVMRPWREKFTASGLRRIAAYGISL
GLMNLLFYFALERIPLGIAVALEFTGPLTVALLSSKRVLDLVWAVLAGLGIYLILPLSEVSQALDMVGVLLALGAGFFWA
LYIVFGKATGKENSSSATSAVGMCFAAAVAFPVGLYTNFEQVVDPSLWMMGFLIAILSSALPYSLEMKAMQNMPAKTFGI
LMSLEPAFATLIGILFLSESLMPSQWVAIGCIMAASAGSTITAR

Specific function: Unknown

COG id: COG5006

COG function: function code R; Predicted permease, DMT superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1787033, Length=285, Percent_Identity=49.4736842105263, Blast_Score=254, Evalue=6e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 30398; Mature: 30267

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESTRVQPLYKSIYLILIAMLSIQFGASVAKGLFPVAGPAGTTALRVFISALILVLVMR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
PWREKFTASGLRRIAAYGISLGLMNLLFYFALERIPLGIAVALEFTGPLTVALLSSKRVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCHHH
DLVWAVLAGLGIYLILPLSEVSQALDMVGVLLALGAGFFWALYIVFGKATGKENSSSATS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
AVGMCFAAAVAFPVGLYTNFEQVVDPSLWMMGFLIAILSSALPYSLEMKAMQNMPAKTFG
HHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHH
ILMSLEPAFATLIGILFLSESLMPSQWVAIGCIMAASAGSTITAR
HHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TESTRVQPLYKSIYLILIAMLSIQFGASVAKGLFPVAGPAGTTALRVFISALILVLVMR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
PWREKFTASGLRRIAAYGISLGLMNLLFYFALERIPLGIAVALEFTGPLTVALLSSKRVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCHHH
DLVWAVLAGLGIYLILPLSEVSQALDMVGVLLALGAGFFWALYIVFGKATGKENSSSATS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
AVGMCFAAAVAFPVGLYTNFEQVVDPSLWMMGFLIAILSSALPYSLEMKAMQNMPAKTFG
HHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHH
ILMSLEPAFATLIGILFLSESLMPSQWVAIGCIMAASAGSTITAR
HHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]