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The map label for this gene is dppC [H]

Identifier: 42521977

GI number: 42521977

Start: 336870

End: 337889

Strand: Direct

Name: dppC [H]

Synonym: Bd0360

Alternate gene names: 42521977

Gene position: 336870-337889 (Clockwise)

Preceding gene: 42521976

Following gene: 42521978

Centisome position: 8.9

GC content: 50.29

Gene sequence:

>1020_bases
ATGATCGAAAAATATCTTATTCGCAATGAATTGACGCTGAAGAGATATAAGCGATTTAAGCGCGATCGTGTCGCTGTTGT
CTCTGTTTGGATTCTTTTGGCTATGTTCTTCGTGAGCTTCACGGCAGAACTTTGGGCCAACAATCACCCGCACGTGATGA
GCTACAACGGGAAGTTGTTCTTCCCATTGTTCAAGGACTATCACCCAACTGCCTTCGGCCGTGATGACATCTATGTGATG
GATTATCGTGAGCTTGAAATGAAAGAGGGCGACTGGGCGGTATGGCCGGTTATTCAGTGGGACCCGTATGAAAGCAACAA
ACTTGTAGACACGTATCCATCCCCTCCAACCCAGGTAAATTGGTTGGGTACGGATGAGAGCGGTCGTGACGTGATGACTC
GTCTGTTGTACGGCTTCCGTTACACGATGTTGTTCGCGATCGGTTCTTGGCTGGCGACCTATGCGATTGGTATCACCATG
GGTGCTATCATGGGTTACATGGGTGGCAAGACCGACTTGGTAGGTCAGCGTCTGGTTGAGATCGTGGAAAGCACCCCGAT
CCTGATCGTTCTTTTGACCATCATTTCTATCTTTACTCCAAGCTTGCCGTTGTTGATCGGGTTCTTCGCGATCTTCAGCT
GGACCGGGATCTCTGCTTATATGCGTGCCCAGTTCCTGTCTTTGAGAAAGCGTGAGTACGTTGAGGCAGCTAAAGCGATT
GGTGCGGATCACACCCGTATCATTGGTAAACACATCCTGCCGAACGGTTTGACTCCGATTGTGACTTTTGCGCCGTTCTT
TATCGCAGGTGGCGTGAATACATTGTCTTTCCTGGATTACCTGGGCTTGGGTCTTCGTCCGCCGACTCCTTCTTGGGGTG
AGTTGCTGGCTCAGGCTCAAAAATGGTTCACGATTGCAGAGTGGATTGTTTGGGGCCCGATGGTGGCTCTGGTTCTGACT
CTGACCCTGTTGATCAACATCGGTCTTGCAGTCCGCGACGCCTTCGACTCCAAAATGTAG

Upstream 100 bases:

>100_bases
TGATCATGGGTCTGACATTTATTTCGTCTTTGCTTTTGATGTTCGGACGTATTTTCTCTGACATCATTTATGTTCTTATT
GATCCAAGGATTGACTTCAA

Downstream 100 bases:

>100_bases
ATAAAAAACAGGTGGCTTAAGGCCACCTTTTTTTATCCCCAAAAAGGTGCCTGGTGACTTTTTACACCTACACCGCATCA
TTCTTTCTGTCTTTAAAGTT

Product: peptide ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MIEKYLIRNELTLKRYKRFKRDRVAVVSVWILLAMFFVSFTAELWANNHPHVMSYNGKLFFPLFKDYHPTAFGRDDIYVM
DYRELEMKEGDWAVWPVIQWDPYESNKLVDTYPSPPTQVNWLGTDESGRDVMTRLLYGFRYTMLFAIGSWLATYAIGITM
GAIMGYMGGKTDLVGQRLVEIVESTPILIVLLTIISIFTPSLPLLIGFFAIFSWTGISAYMRAQFLSLRKREYVEAAKAI
GADHTRIIGKHILPNGLTPIVTFAPFFIAGGVNTLSFLDYLGLGLRPPTPSWGELLAQAQKWFTIAEWIVWGPMVALVLT
LTLLINIGLAVRDAFDSKM

Sequences:

>Translated_339_residues
MIEKYLIRNELTLKRYKRFKRDRVAVVSVWILLAMFFVSFTAELWANNHPHVMSYNGKLFFPLFKDYHPTAFGRDDIYVM
DYRELEMKEGDWAVWPVIQWDPYESNKLVDTYPSPPTQVNWLGTDESGRDVMTRLLYGFRYTMLFAIGSWLATYAIGITM
GAIMGYMGGKTDLVGQRLVEIVESTPILIVLLTIISIFTPSLPLLIGFFAIFSWTGISAYMRAQFLSLRKREYVEAAKAI
GADHTRIIGKHILPNGLTPIVTFAPFFIAGGVNTLSFLDYLGLGLRPPTPSWGELLAQAQKWFTIAEWIVWGPMVALVLT
LTLLINIGLAVRDAFDSKM
>Mature_339_residues
MIEKYLIRNELTLKRYKRFKRDRVAVVSVWILLAMFFVSFTAELWANNHPHVMSYNGKLFFPLFKDYHPTAFGRDDIYVM
DYRELEMKEGDWAVWPVIQWDPYESNKLVDTYPSPPTQVNWLGTDESGRDVMTRLLYGFRYTMLFAIGSWLATYAIGITM
GAIMGYMGGKTDLVGQRLVEIVESTPILIVLLTIISIFTPSLPLLIGFFAIFSWTGISAYMRAQFLSLRKREYVEAAKAI
GADHTRIIGKHILPNGLTPIVTFAPFFIAGGVNTLSFLDYLGLGLRPPTPSWGELLAQAQKWFTIAEWIVWGPMVALVLT
LTLLINIGLAVRDAFDSKM

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4239

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788505, Length=327, Percent_Identity=37.6146788990826, Blast_Score=231, Evalue=6e-62,
Organism=Escherichia coli, GI1787054, Length=240, Percent_Identity=28.75, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787498, Length=244, Percent_Identity=31.5573770491803, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789964, Length=248, Percent_Identity=32.258064516129, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787760, Length=224, Percent_Identity=30.8035714285714, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=25.9259259259259, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787549, Length=219, Percent_Identity=28.7671232876712, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38607; Mature: 38607

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEKYLIRNELTLKRYKRFKRDRVAVVSVWILLAMFFVSFTAELWANNHPHVMSYNGKLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEE
FPLFKDYHPTAFGRDDIYVMDYRELEMKEGDWAVWPVIQWDPYESNKLVDTYPSPPTQVN
EEHHHCCCCCCCCCCCEEEEEHHHHHCCCCCEEEEEEEEECCCCCCCEEECCCCCCCEEE
WLGTDESGRDVMTRLLYGFRYTMLFAIGSWLATYAIGITMGAIMGYMGGKTDLVGQRLVE
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IVESTPILIVLLTIISIFTPSLPLLIGFFAIFSWTGISAYMRAQFLSLRKREYVEAAKAI
HHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GADHTRIIGKHILPNGLTPIVTFAPFFIAGGVNTLSFLDYLGLGLRPPTPSWGELLAQAQ
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH
KWFTIAEWIVWGPMVALVLTLTLLINIGLAVRDAFDSKM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC
>Mature Secondary Structure
MIEKYLIRNELTLKRYKRFKRDRVAVVSVWILLAMFFVSFTAELWANNHPHVMSYNGKLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEE
FPLFKDYHPTAFGRDDIYVMDYRELEMKEGDWAVWPVIQWDPYESNKLVDTYPSPPTQVN
EEHHHCCCCCCCCCCCEEEEEHHHHHCCCCCEEEEEEEEECCCCCCCEEECCCCCCCEEE
WLGTDESGRDVMTRLLYGFRYTMLFAIGSWLATYAIGITMGAIMGYMGGKTDLVGQRLVE
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IVESTPILIVLLTIISIFTPSLPLLIGFFAIFSWTGISAYMRAQFLSLRKREYVEAAKAI
HHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GADHTRIIGKHILPNGLTPIVTFAPFFIAGGVNTLSFLDYLGLGLRPPTPSWGELLAQAQ
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH
KWFTIAEWIVWGPMVALVLTLTLLINIGLAVRDAFDSKM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]