| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is rbp [H]
Identifier: 42521960
GI number: 42521960
Start: 322390
End: 322752
Strand: Direct
Name: rbp [H]
Synonym: Bd0339
Alternate gene names: 42521960
Gene position: 322390-322752 (Clockwise)
Preceding gene: 42521959
Following gene: 42521961
Centisome position: 8.52
GC content: 56.47
Gene sequence:
>363_bases GTGGCTAAGAAACTTTACGTAGGCAACTTGCCTTACTCTGTAGACGATGAGGCACTTCATCAACACTTCGCACAGTTCGG TGCGGTAGATTCAGCAAAAGTGATCATGGATAGAGAAACCGGTCGCTCTAAAGGCTTCGGCTTTGTAGAGATGTCCGATG ACTCTGCTGCTGATCAAGCTATCGAAAGAGGCAACGGTATTGAGTTGGGCGGTCGTCCTATCAATATCTCTGAGGCTCGT CCTCAGGCTCCTCGTGAAGGCGGCCCACGTCGTGGTGGTGGCGGCTTCGGTGGTGGTCGCGGCGGTGGCGGCGGCGAAAG ACGTGGTGGCTTCGGCGGCGGTGGTCGCGGTGGTCCTCGCTAA
Upstream 100 bases:
>100_bases CTAGCGTTATTGGTAGTTAAAAGTCCCCGTGTGAGTGTACTCGATTTCATCTTGTTCGAAGGCTTCCTCGGGTATTATGG CCCAACCATAGGAGGTCTTT
Downstream 100 bases:
>100_bases GCAGCCCATACTTTGACGAAGCTGGACTTGTCATTGTCTTAAAAACTAAGGTCTCATAGGAACCCTATGAGACCTTTTTT ATTTTCACTCATTCTTCTTT
Product: RNA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 120; Mature: 119
Protein sequence:
>120_residues MAKKLYVGNLPYSVDDEALHQHFAQFGAVDSAKVIMDRETGRSKGFGFVEMSDDSAADQAIERGNGIELGGRPINISEAR PQAPREGGPRRGGGGFGGGRGGGGGERRGGFGGGGRGGPR
Sequences:
>Translated_120_residues MAKKLYVGNLPYSVDDEALHQHFAQFGAVDSAKVIMDRETGRSKGFGFVEMSDDSAADQAIERGNGIELGGRPINISEAR PQAPREGGPRRGGGGFGGGRGGGGGERRGGFGGGGRGGPR >Mature_119_residues AKKLYVGNLPYSVDDEALHQHFAQFGAVDSAKVIMDRETGRSKGFGFVEMSDDSAADQAIERGNGIELGGRPINISEARP QAPREGGPRRGGGGFGGGRGGGGGERRGGFGGGGRGGPR
Specific function: Unknown
COG id: COG0724
COG function: function code R; RNA-binding proteins (RRM domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RRM (RNA recognition motif) domain [H]
Homologues:
Organism=Homo sapiens, GI4757926, Length=73, Percent_Identity=45.2054794520548, Blast_Score=77, Evalue=4e-15, Organism=Homo sapiens, GI35493811, Length=73, Percent_Identity=45.2054794520548, Blast_Score=77, Evalue=4e-15, Organism=Homo sapiens, GI116734694, Length=73, Percent_Identity=42.4657534246575, Blast_Score=71, Evalue=2e-13, Organism=Homo sapiens, GI116734696, Length=73, Percent_Identity=42.4657534246575, Blast_Score=71, Evalue=2e-13, Organism=Homo sapiens, GI116734698, Length=73, Percent_Identity=42.4657534246575, Blast_Score=71, Evalue=2e-13, Organism=Homo sapiens, GI221139802, Length=77, Percent_Identity=44.1558441558442, Blast_Score=70, Evalue=3e-13, Organism=Homo sapiens, GI34577105, Length=76, Percent_Identity=44.7368421052632, Blast_Score=70, Evalue=4e-13, Organism=Homo sapiens, GI34577107, Length=77, Percent_Identity=44.1558441558442, Blast_Score=69, Evalue=8e-13, Organism=Homo sapiens, GI5803137, Length=76, Percent_Identity=42.1052631578947, Blast_Score=68, Evalue=1e-12, Organism=Homo sapiens, GI289547743, Length=78, Percent_Identity=41.025641025641, Blast_Score=67, Evalue=2e-12, Organism=Homo sapiens, GI289547741, Length=78, Percent_Identity=41.025641025641, Blast_Score=67, Evalue=3e-12, Organism=Homo sapiens, GI70780381, Length=78, Percent_Identity=41.025641025641, Blast_Score=67, Evalue=3e-12, Organism=Homo sapiens, GI303305009, Length=88, Percent_Identity=42.0454545454545, Blast_Score=67, Evalue=3e-12, Organism=Homo sapiens, GI5174637, Length=88, Percent_Identity=42.0454545454545, Blast_Score=67, Evalue=3e-12, Organism=Homo sapiens, GI14149675, Length=77, Percent_Identity=38.961038961039, Blast_Score=67, Evalue=3e-12, Organism=Homo sapiens, GI45439316, Length=88, Percent_Identity=42.0454545454545, Blast_Score=67, Evalue=3e-12, Organism=Homo sapiens, GI208431833, Length=83, Percent_Identity=40.9638554216867, Blast_Score=67, Evalue=4e-12, Organism=Homo sapiens, GI4504715, Length=83, Percent_Identity=40.9638554216867, Blast_Score=67, Evalue=4e-12, Organism=Homo sapiens, GI4557493, Length=77, Percent_Identity=38.961038961039, Blast_Score=67, Evalue=4e-12, Organism=Homo sapiens, GI208431836, Length=76, Percent_Identity=43.421052631579, Blast_Score=66, Evalue=5e-12, Organism=Homo sapiens, GI24762232, Length=80, Percent_Identity=38.75, Blast_Score=66, Evalue=6e-12, Organism=Homo sapiens, GI46367787, Length=83, Percent_Identity=42.1686746987952, Blast_Score=62, Evalue=8e-11, Organism=Homo sapiens, GI4502847, Length=76, Percent_Identity=38.1578947368421, Blast_Score=62, Evalue=9e-11, Organism=Caenorhabditis elegans, GI212648574, Length=79, Percent_Identity=44.3037974683544, Blast_Score=74, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17569937, Length=79, Percent_Identity=44.3037974683544, Blast_Score=74, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17508585, Length=75, Percent_Identity=38.6666666666667, Blast_Score=74, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17508567, Length=75, Percent_Identity=41.3333333333333, Blast_Score=72, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17508587, Length=77, Percent_Identity=37.6623376623377, Blast_Score=72, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17553656, Length=77, Percent_Identity=40.2597402597403, Blast_Score=66, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17567131, Length=76, Percent_Identity=40.7894736842105, Blast_Score=63, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17567133, Length=76, Percent_Identity=40.7894736842105, Blast_Score=63, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6321599, Length=79, Percent_Identity=43.0379746835443, Blast_Score=70, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6321013, Length=76, Percent_Identity=46.0526315789474, Blast_Score=65, Evalue=4e-12, Organism=Drosophila melanogaster, GI17137710, Length=77, Percent_Identity=41.5584415584416, Blast_Score=70, Evalue=2e-13, Organism=Drosophila melanogaster, GI19920866, Length=73, Percent_Identity=42.4657534246575, Blast_Score=69, Evalue=9e-13, Organism=Drosophila melanogaster, GI24582412, Length=73, Percent_Identity=42.4657534246575, Blast_Score=69, Evalue=9e-13, Organism=Drosophila melanogaster, GI24582417, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI45550943, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24582419, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24582423, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24582421, Length=78, Percent_Identity=42.3076923076923, Blast_Score=68, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012677 - InterPro: IPR000504 - InterPro: IPR015465 [H]
Pfam domain/function: PF00076 RRM_1 [H]
EC number: NA
Molecular weight: Translated: 12332; Mature: 12201
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: PS50102 RRM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKKLYVGNLPYSVDDEALHQHFAQFGAVDSAKVIMDRETGRSKGFGFVEMSDDSAADQA CCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCCCHHHHH IERGNGIELGGRPINISEARPQAPREGGPRRGGGGFGGGRGGGGGERRGGFGGGGRGGPR HHCCCCEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AKKLYVGNLPYSVDDEALHQHFAQFGAVDSAKVIMDRETGRSKGFGFVEMSDDSAADQA CCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCCCHHHHH IERGNGIELGGRPINISEARPQAPREGGPRRGGGGFGGGRGGGGGERRGGFGGGGRGGPR HHCCCCEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]