| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42521907
Identifier: 42521907
GI number: 42521907
Start: 270170
End: 270706
Strand: Direct
Name: 42521907
Synonym: Bd0284
Alternate gene names: NA
Gene position: 270170-270706 (Clockwise)
Preceding gene: 42521906
Following gene: 42521908
Centisome position: 7.14
GC content: 46.55
Gene sequence:
>537_bases ATGTCTGAGCCTAGAGATGAGTATAACCGTAGTGGTCTGCTGGCGTTTGCCTTTTCAATGGTATTCGTCTGTGCATTCTT CGTTTACATCGTTGCGATCAATAAAGGTGTTGATCTTGGCGAGAACGTTGTAGATCCAAATGCCCCTGCAGTAGAGGGCG CTGTTCCTGTCTTTGATATCACCAAAGTTCCAGATCCTTGGGTTTCCACTCCGGAAATGGTTGCTTACGGTAAAAAGTTC TACGCTACAAACTGCGCTATGTGCCACGGTAACGAAGGCAAAGGCGACGGTGCTGCGGGTGCAGCTTTGAATCCAAAACC ACGCAACTTGGTTGAGGGTAAATGGACTCAAGGTGAAGGCGTTATTGCTCACTTTAAAGTTCTGCAAAATGGTATCAAAG GTTCCTCTATGGCGGCGTACTCTCATTTCAAGCCTGCTGACCGCTGGGCCGTGATCCATTTCATCGATTCTATCACTGAA AATAAATCTAAAGACGATCCTGCTGCAGTTGCTGAGTTTGCAAAAACCGCACAATAA
Upstream 100 bases:
>100_bases CGTAATAGGTTGCCCATCTGCCTGTTTTCGGTTAGTTATCGTTTAATATATTACAATACTGTGACAAAACTACTTTGCGT CCCCCAGGGAGTGCCAACCT
Downstream 100 bases:
>100_bases TTAAGGATTTAATTAATGCTTGCCAATGAGCTGGTATTGAAAACAAAGACAATGGGAGCGGTACTGACAACGGCCGTTCT TGTTTTGTTTTCAGCAAGTG
Product: hypothetical protein
Products: NA
Alternate protein names: Cytochrome C Class I; High-Affinity Fe2+/Pb2+ Permease; PbrT Protein
Number of amino acids: Translated: 178; Mature: 177
Protein sequence:
>178_residues MSEPRDEYNRSGLLAFAFSMVFVCAFFVYIVAINKGVDLGENVVDPNAPAVEGAVPVFDITKVPDPWVSTPEMVAYGKKF YATNCAMCHGNEGKGDGAAGAALNPKPRNLVEGKWTQGEGVIAHFKVLQNGIKGSSMAAYSHFKPADRWAVIHFIDSITE NKSKDDPAAVAEFAKTAQ
Sequences:
>Translated_178_residues MSEPRDEYNRSGLLAFAFSMVFVCAFFVYIVAINKGVDLGENVVDPNAPAVEGAVPVFDITKVPDPWVSTPEMVAYGKKF YATNCAMCHGNEGKGDGAAGAALNPKPRNLVEGKWTQGEGVIAHFKVLQNGIKGSSMAAYSHFKPADRWAVIHFIDSITE NKSKDDPAAVAEFAKTAQ >Mature_177_residues SEPRDEYNRSGLLAFAFSMVFVCAFFVYIVAINKGVDLGENVVDPNAPAVEGAVPVFDITKVPDPWVSTPEMVAYGKKFY ATNCAMCHGNEGKGDGAAGAALNPKPRNLVEGKWTQGEGVIAHFKVLQNGIKGSSMAAYSHFKPADRWAVIHFIDSITEN KSKDDPAAVAEFAKTAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19173; Mature: 19042
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEPRDEYNRSGLLAFAFSMVFVCAFFVYIVAINKGVDLGENVVDPNAPAVEGAVPVFDI CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEC TKVPDPWVSTPEMVAYGKKFYATNCAMCHGNEGKGDGAAGAALNPKPRNLVEGKWTQGEG CCCCCCCCCCHHHHHHCCHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VIAHFKVLQNGIKGSSMAAYSHFKPADRWAVIHFIDSITENKSKDDPAAVAEFAKTAQ HHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC >Mature Secondary Structure SEPRDEYNRSGLLAFAFSMVFVCAFFVYIVAINKGVDLGENVVDPNAPAVEGAVPVFDI CCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEC TKVPDPWVSTPEMVAYGKKFYATNCAMCHGNEGKGDGAAGAALNPKPRNLVEGKWTQGEG CCCCCCCCCCHHHHHHCCHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VIAHFKVLQNGIKGSSMAAYSHFKPADRWAVIHFIDSITENKSKDDPAAVAEFAKTAQ HHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA